Contig 011322:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023D24Sequence641011322 (2)ref|XP_007011187.1|8e-64Seven in absentia of 2 isoform 1 [Theobroma cacao] ref|XP_007011188.1| Seven in 769011322 (2)ref|NP_001268043.1|2e-139SINA2p [Vitis vinifera] ref|XP_010653732.1| PREDICTED: SINA2p isoform X1 [Vitis

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF023D24- GGCACTGAATATTTCTGCAC
                      ____________________________________________________________
consensus GGCACTGAATATTTCTGCAC
 
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JMSF023D24- ACCATAGAAGACGTTTAGATAGTACAGTATATTGTTGTCGCTACCAGATTGGGCGTGTCT
                      ____________________________________________________________
consensus ACCATAGAAGACGTTTAGATAGTACAGTATATTGTTGTCGCTACCAGATTGGGCGTGTCT
 
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JMSF023D24- ATGTAAACAGAACAGAGGACTCAGAAAGTCAGCTCGCTCAAAGTATTTGATCGATCATGG
                      ____________________________________________________________
consensus ATGTAAACAGAACAGAGGACTCAGAAAGTCAGCTCGCTCAAAGTATTTGATCGATCATGG
 
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JMSF023D24- CTCCCGGAGGTGGAGCTTGTAGAGAAGTGGTGGAAACACAGCCGAAGTCTGCGAATTTTG
                      ____________________________________________________________
consensus CTCCCGGAGGTGGAGCTTGTAGAGAAGTGGTGGAAACACAGCCGAAGTCTGCGAATTTTG
 
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JMSF023D24- ATATGGCAACGAAACGGCGACCAGAGAAAAGCAGGGCTCTGGTGAAGTATGCCGGCGGGA
                      ____________________________________________________________
consensus ATATGGCAACGAAACGGCGACCAGAGAAAAGCAGGGCTCTGGTGAAGTATGCCGGCGGGA
 
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JMSF023D24- GAGGCGACAAGATGGATGGGCCTTTGAATTATGACGTGCACCAGCTGCTGGAGTGCCCCG
                      ____________________________________________________________
consensus GAGGCGACAAGATGGATGGGCCTTTGAATTATGACGTGCACCAGCTGCTGGAGTGCCCCG
 
. : . : . : . : . : . :
JMSF023D24- TCTGCAGAAATTCGATGCTTCCACCGATTTTTCAGTGTCCAAAGGGGCACACCCTATGCG
rJMSF023D24+ GATGCTTCCACCGATTTTTCAGTGTCCAAAGGGGCACACCCTATGCG
                      ____________________________________________________________
consensus TCTGCAGAAATTCGATGCTTCCACCGATTTTTCAGTGTCCAAAGGGGCACACCCTATGCG
 
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JMSF023D24- CAAGCTGCAATGGAGCGCACAAGATTTGCCCGACTTGCCAATCTGAGATGGGAGACATCA
rJMSF023D24+ CAAGCTGCAATGGAGCGCACAAGATTTGCCCGACTTGCCAATCTGAGATGGGAGACATCA
                      ____________________________________________________________
consensus CAAGCTGCAATGGAGCGCACAAGATTTGCCCGACTTGCCAATCTGAGATGGGAGACATCA
 
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JMSF023D24- GGTGCTTAGTCCTGGAAAAAGTGGCCGACTCTTTGGATCTTCCCTGCAGATTCCAAAGCG
rJMSF023D24+ GGTGCTTAGTCCTGGAAAAAGTGGCCGACTCTTTGGATCTTCCCTGCAGATTCCAAAGCG
                      ____________________________________________________________
consensus GGTGCTTAGTCCTGGAAAAAGTGGCCGACTCTTTGGATCTTCCCTGCAGATTCCAAAGCG
 
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JMSF023D24- CCGGCTGTGATCATATATTTCCGTATTACAGGAAGCTGAATCACGAAAAACGTTGTAGAT
rJMSF023D24+ CCGGCTGTGATCATATATTTCCGTATTACAGGAAGCTGAATCACGAAAAACGTTGTAGAT
                      ____________________________________________________________
consensus CCGGCTGTGATCATATATTTCCGTATTACAGGAAGCTGAATCACGAAAAACGTTGTAGAT
 
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JMSF023D24- TCCGCCCCTACAATTGCCCCTACGCAGGATCAGAGTGTTGCGTCACCGGCGACATCCCAG
rJMSF023D24+ TCCGCCCCTACAATTGCCCCTACGCAGGATCAGAGTGTTGCGTCACCGGCGACATCCCAG
                      ____________________________________________________________
consensus TCCGCCCCTACAATTGCCCCTACGCAGGATCAGAGTGTTGCGTCACCGGCGACATCCCAG
 
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JMSF023D24- CCCTGGTAAAGCATCTCAGGG
rJMSF023D24+ CCCTGGTAAAGCATCTCAGGGAGGATCACAAGGTCGACATGCATAACGGCTGCACCTTTA
                      ____________________________________________________________
consensus CCCTGGTAAAGCATCTCAGGGAGGATCACAAGGTCGACATGCATAACGGCTGCACCTTTA
 
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rJMSF023D24+ ACCATCGCTATGTCAAGTCAGATCCTCAACAAGTTGAAAACGCAACATGGATGCTCACTG
                      ____________________________________________________________
consensus ACCATCGCTATGTCAAGTCAGATCCTCAACAAGTTGAAAACGCAACATGGATGCTCACTG
 
. : . : . : . : . : . :
rJMSF023D24+ TGTTTGACTGTCATGGAAAGCAGTTCTGCTTGCATTTTGAGGCATTCCCTCTGGGAACGA
                      ____________________________________________________________
consensus TGTTTGACTGTCATGGAAAGCAGTTCTGCTTGCATTTTGAGGCATTCCCTCTGGGAACGA
 
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rJMSF023D24+ CGCCGGTGTACATGGCCTTTCTGCGGTTCATGGGCGAAGATGGCGAGGCTAAATTGTTCA
                      ____________________________________________________________
consensus CGCCGGTGTACATGGCCTTTCTGCGGTTCATGGGCGAAGATGGCGAGGCTAAATTGTTCA
 
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rJMSF023D24+ GCTATAGTTTGGAAGTAGGCGGGCATGGGCGCAAACTGACATGGCAAGGAGTGCCAAGGA
                      ____________________________________________________________
consensus GCTATAGTTTGGAAGTAGGCGGGCATGGGCGCAAACTGACATGGCAAGGAGTGCCAAGGA
 
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rJMSF023D24+ GTATCCGTGAAAGCCATAGACAGGTTCGGGATAGTCAAGATGGGCTCATAATTCCAAGAA
                      ____________________________________________________________
consensus GTATCCGTGAAAGCCATAGACAGGTTCGGGATAGTCAAGATGGGCTCATAATTCCAAGAA
 
. : . : . : . : . : . :
rJMSF023D24+ CCATAGCGCTTTACTTCTCCGCCGGCGATGCCCAAGAGCTTAAGCTAAAGGTAACAGGTC
                      ____________________________________________________________
consensus CCATAGCGCTTTACTTCTCCGCCGGCGATGCCCAAGAGCTTAAGCTAAAGGTAACAGGTC
 
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rJMSF023D24+ GAATATGGAAGGAGCAGTAATATAATAAGCTTCTATAAGCTCATCTCATCTGCTTATTAT
                      ____________________________________________________________
consensus GAATATGGAAGGAGCAGTAATATAATAAGCTTCTATAAGCTCATCTCATCTGCTTATTAT