Contig 011303:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011F07Sequence193010614 (3)ref|XP_009411683.1|2e-11PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 2 [Musa ac326011303 (3)ref|XP_009611314.1|51.6PREDICTED: uncharacterized protein LOC104104832 [Nicotiana tomentosiformis]
JMSF019J11Sequence493010614 (3)emb|CBI39526.3|2e-27unnamed protein product [Vitis vinifera]772011303 (3)ref|XP_009778243.1|7e-08PREDICTED: circumsporozoite protein [Nicotiana sylvestris]
JMSF044H22Sequence662010614 (3)ref|XP_009778243.1|6e-28PREDICTED: circumsporozoite protein [Nicotiana sylvestris]683011303 (3)ref|XP_009778243.1|2e-08PREDICTED: circumsporozoite protein [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF044H22+                            GCCACGCCGGAGAAAAAGGACGGCGAAGCCGGCGGTAACGTC
                      ____________________________________________________________
consensus                               GCCACGCCGGAGAAAAAGGACGGCGAAGCCGGCGGTAACGTC
 
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rJMSF044H22+          GCCGGTGAAGACAATGGCAGTACCGGTAAAATAAAGAAAAAGAAAGGGCAAAATGGGAAT
rJMSF019J11+                 AAGACAATGGCAGTACCGGTAAAATAAAGAAAAAGAAAGGGCAAAATGGGAAT
                      ____________________________________________________________
consensus             GCCGGTGAAGACAATGGCAGTACCGGTAAAATAAAGAAAAAGAAAGGGCAAAATGGGAAT
 
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rJMSF044H22+          TTCAATTCCGACGAGAAAGTCTCATCAAGTGCTGGTGGACCAGCAGGTACGGGATCACAC
rJMSF019J11+          TTCAATTCCGACGAGAAAGTCTCATCAAGTGCTGGTGGACCAGCAGGTACGGGATCACAC
                      ____________________________________________________________
consensus             TTCAATTCCGACGAGAAAGTCTCATCAAGTGCTGGTGGACCAGCAGGTACGGGATCACAC
 
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rJMSF044H22+          CATCATGAACCGGCCCCACACGCGGCTTCTACTTCCACCAATCACATCCCTCCACATCAT
rJMSF011F07+                                            CCACCAATCACNTCCNTNCACATCAT
rJMSF019J11+          CATCATGAACCGGCCCCACACGCGGCTTCTACTTCCACCAATCACATCCCTCCACATCAT
                      ____________________________________________________________
consensus             CATCATGAACCGGCCCCACACGCGGCTTCTACTTCCACCAATCACATCCCTCCACATCAT
 
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rJMSF044H22+          CATCCATATGGCCCACAATACTACGGGCCCACACCCGTATACGCCGTGAGCTACAATACG
rJMSF011F07+          CATCCATATGGCCCACAATANTNCGGGNCCACACCCGTATACGCCGTGAGTTACAATANG
rJMSF019J11+          CATCCATATGGCCCACAATACTACGGGCCCACACCCGTATACGCCGTGAGCTACAATACG
                      ____________________________________________________________
consensus             CATCCATATGGCCCACAATACTACGGGCCCACACCCGTATACGCCGTGAGCTACAATACG
 
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rJMSF044H22+          GCCTACCCAACAAGTAGCAGTACAACGTCGTACTACGCAACACCGCCCTCGAATTCGTAT
rJMSF011F07+          GCCTACCCAACAAGTAGCAGTNCAACGTNGTNCTACGCAACACCGCCCTNGAATTCGTAT
rJMSF019J11+          GCCTACCCAACAAGTAGCAGTACAACGTCGTACTACGCAACACCGCCCTCGAATTCGTAT
                      ____________________________________________________________
consensus             GCCTACCCAACAAGTAGCAGTACAACGTCGTACTACGCAACACCGCCCTCGAATTCGTAT
 
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rJMSF044H22+          GCTTATACGTATCCCGGGCCCACCATGCAACCGCCACCGTCCGATTTGGTGCATCCACAA
rJMSF011F07+          GNTTATANGTATCCCGGGCCCACCATGCAACCGCCACCGTCCGATTNGGNGCATCCACAA
rJMSF019J11+          GCTTATACGTATCCCGGGCCCACCATGCAACCGCCACCGTCCGATTTGGTGCATCCACAA
                      ____________________________________________________________
consensus             GCTTATACGTATCCCGGGCCCACCATGCAACCGCCACCGTCCGATTTGGTGCATCCACAA
 
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rJMSF044H22+          CAGCCGTCGGATTCATTTGAACTATTCAGTGATGAGAACCCTAATGGGTGCTCAA-TTAT
rJMSF011F07+          CAGCCGTCGGATTCATTTGAACTATTCAGTGATGAGAACCCTAATGGGTGCTCAAGCTAT
rJMSF019J11+          CAGCCGTCGGATTCATTTGAACTATTCAGTGATGAGAACCCTAATGGGTGCTCAA-TTAT
                      ____________________________________________________________
consensus             CAGCCGTCGGATTCATTTGAACTATTCAGTGATGAGAACCCTAATGGGTGCTCAA-TTAT
 
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rJMSF044H22+          GTAATAATTTTATTTGTATCC--TTGAAGGGTTGCTTCGCTTATACCACTCGTATAAGGT
rJMSF011F07+          GTAATAATTTTATTTGTATCCTTTTGAAGGGTTGCTTCGCTTATACCACTCGTATAAGGT
rJMSF019J11+          GTAATAATTTTATTTGTATCCTTTTGAAGGGTTGCTTCGCTTATACCACTCGTATAAGGT
                      ____________________________________________________________
consensus             GTAATAATTTTATTTGTATCCTTTTGAAGGGTTGCTTCGCTTATACCACTCGTATAAGGT
 
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rJMSF044H22+          TGTGAGGGCTAATTTTGGAAATTGTATAGATGTATGAAAGTGAGATTAGGGATCAGAATT
rJMSF019J11+          TGTGAGGGCTAATTTTGGAAATTGTATAGATGTATGAAAGTGAGATTAGGGATCAGAATT
                      ____________________________________________________________
consensus             TGTGAGGGCTAATTTTGGAAATTGTATAGATGTATGAAAGTGAGATTAGGGATCAGAATT
 
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rJMSF044H22+          AGAAGGAAACCCCATGGAAAAGCAAACAACCAAGCAAAATGTCGAATTTAACCCCTCATG
rJMSF019J11+          AGAAGGAAACCCCATGGAAAAGCAAACAACCAAGCAAAATGTCGAATTTAACCCCTCATG
                      ____________________________________________________________
consensus             AGAAGGAAACCCCATGGAAAAGCAAACAACCAAGCAAAATGTCGAATTTAACCCCTCATG
 
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rJMSF044H22+          TTCTGAGAATCATGTCCACGGAAGTGAACACGTGTCAAGTCT                  
rJMSF019J11+          TTCTGAGAATCATGTCCACGGAAGTGAACACGTGTCAAGTCTTAATTGGATGAGATGTTT
                      ____________________________________________________________
consensus             TTCTGAGAATCATGTCCACGGAAGTGAACACGTGTCAAGTCTTAATTGGATGAGATGTTT
 
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rJMSF019J11+          GGTGTTCAATCAGTTCAAAAGAGAGGTTTTGGGGTTTTCTTTATAATAGTTGCTTTTGTA
                      ____________________________________________________________
consensus             GGTGTTCAATCAGTTCAAAAGAGAGGTTTTGGGGTTTTCTTTATAATAGTTGCTTTTGTA
 
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rJMSF019J11+          CAATGTAGCCTTAGTTGGTAAGTTTAGTAGTCATTTTGGCTTCTTTTGCTGAAAAGTGTA
                      ____________________________________________________________
consensus             CAATGTAGCCTTAGTTGGTAAGTTTAGTAGTCATTTTGGCTTCTTTTGCTGAAAAGTGTA