| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF001B14 | Sequence | 264 | 011882 (4) | ref|XP_009610482.1| | 7e-18 | PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana toment | 728 | 011302 (4) | ref|XP_009784195.1| | 2e-41 | PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana sylves |
| JMSF003N18 | Sequence | 345 | 011882 (4) | ref|XP_009784195.1| | 1e-32 | PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana sylves | 703 | 011302 (4) | ref|XP_009784195.1| | 2e-34 | PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana sylves |
| JMSF014N11 | Sequence | 178 | 011882 (4) | 733 | 011302 (4) | ref|XP_009784195.1| | 3e-42 | PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana sylves | |||
| JMSF019H06 | Sequence | 575 | 011882 (4) | ref|XP_004245129.1| | 1e-81 | PREDICTED: zinc finger CCCH domain-containing protein 20-like [Solanum lycopers | 734 | 011302 (4) | ref|XP_009784195.1| | 8e-41 | PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana sylves |
This contig is upended
. : . : . : . : . : . :
rJMSF001B14+ CTCACACTCCCG
rJMSF014N11+ TTCGCTCACACTCCCG
rJMSF019H06+ CTCACACTCCCG
____________________________________________________________
consensus TTCGCTCACACTCCCG
. : . : . : . : . : . :
rJMSF001B14+ ATCAGCTCCGGGTTCTTCCTCAGGCGAGTCCCAGGAGCCACCACGCCGCCGCCGAGCCGT
rJMSF014N11+ ATCAGCTCCGGGTTCTTCCTCAGGCGAGTCCCAGGAGCCACCACGCCGCCGCCGAGCCGT
rJMSF003N18+ TTCCTCAGGCGAGTCCCAGGAGCCACCACGCCGCCGCCGAGCCGT
rJMSF019H06+ ATCAGCTCCGGGTTCTTCCTCAGGCGAGTCCCAGGAGCCACCACGCCGCCGCCGAGCCGT
____________________________________________________________
consensus ATCAGCTCCGGGTTCTTCCTCAGGCGAGTCCCAGGAGCCACCACGCCGCCGCCGAGCCGT
. : . : . : . : . : . :
rJMSF001B14+ ACGACTCCTACGACGGCTCGCCCAGCCGCCGCGCCGGATTCGATTCTCTCTTCAATAAGG
rJMSF014N11+ ACGACTCCTACGACGGCTCGCCCAGCCGCCGCGCCGGATTCGATTCTCTCTTCAATAAGG
rJMSF003N18+ ACGACTCNTACGACGGCTCGCCCAGCCGCCGCGCCGGATTCGATTCTCTCTTCAATAAGG
rJMSF019H06+ ACGACTCNTACGACGGCTCGCCCAGCCGCCGCGCCGGATTCGATTCTCTCTTCAATAAGG
____________________________________________________________
consensus ACGACTCCTACGACGGCTCGCCCAGCCGCCGCGCCGGATTCGATTCTCTCTTCAATAAGG
. : . : . : . : . : . :
rJMSF001B14+ CCGCGTTTGGCTCCTACTCTCCTCCGCTTTCCCCCCAGTCCGAATCTCCCCCCATGTCCC
rJMSF014N11+ CCGCGTTTGGCTCCTACTCTCCTCCGCTTTCCCCGCAGTCCGAATCTCCCCCCATGTCCC
rJMSF003N18+ CCGCGTTTGGCTCCTACTCTCCTCCGCTTTCCCCCCAGTCCGAATCTCCCCCCATGTCCC
rJMSF019H06+ CCGCGTTTGGCTCCTACTCTCCTCCGCTTTCCCCCCAGTCCGAATCTCCCCCCATGTCCC
____________________________________________________________
consensus CCGCGTTTGGCTCCTACTCTCCTCCGCTTTCCCCCCAGTCCGAATCTCCCCCCATGTCCC
. : . : . : . : . : . :
rJMSF001B14+ CCAGCGCCTCCATGAGTCTCAACTCAGTGAGCGGACTCGTTGAGTCGATGCGCAACATGC
rJMSF014N11+ CCAGCGCCTCCATGAGTCTCAACTCAGTGAGCGGACTCGTTGAGTCGATGCGCAACATGC
rJMSF003N18+ CCAGCGCCTCCATGAGTCTCAACTCAGTGAGCGGACTCGTTGAGTCGATGCGCAACATGC
rJMSF019H06+ CCAGCGCCTCCATGAGTCTCAACTCAGTGAGCGGACTCGTTGAGTCGATGCGCAACATGC
____________________________________________________________
consensus CCAGCGCCTCCATGAGTCTCAACTCAGTGAGCGGACTCGTTGAGTCGATGCGCAACATGC
. : . : . : . : . : . :
rJMSF001B14+ ATATTGGGAAGGGCAGAATGGGTATGGGCATGAGCATGAGCATGAGCCCACCATCCTGGG
rJMSF014N11+ ATATTGGGAAGGGCAGAATGGGTATGGGCATGAGCATGAGCATGAGCCCACCATCCTGGG
rJMSF003N18+ ATATTGGGAAGGGCAGAATGGGTATGGGCATGAGCATGAGCATGAGCCCACCATCCTGGG
rJMSF019H06+ ATATTGGGAAGGGCAGAATGGGTATGGGCATGAGCATGAGCATGAGCCCACCATCCTGGG
____________________________________________________________
consensus ATATTGGGAAGGGCAGAATGGGTATGGGCATGAGCATGAGCATGAGCCCACCATCCTGGG
. : . : . : . : . : . :
rJMSF001B14+ GTCTCCAACTCGGGTCGCCCCGCAGCCCCTCCACGCTCCGACCCGCATTCATGAGCCTCC
rJMSF014N11+ GTCTCCAACTCGGGTCGCCCCGCAGCCCCTCCACGCTCCGACCCGCATTCATGAGCCTCC
rJMSF003N18+ GTCTCCAACTCGGGTCGCCCCGCAGCCCCTCCACGCTCCGACCCGCATTCATGAGCCTCC
rJMSF019H06+ GTCTCCAACTCGGGTCGCCCCGCAGCCCCTCCACGCTCCGACCCGCATTCATGAGCCTCC
____________________________________________________________
consensus GTCTCCAACTCGGGTCGCCCCGCAGCCCCTCCACGCTCCGACCCGCATTCATGAGCCTCC
. : . : . : . : . : . :
rJMSF001B14+ CAACCACTCCTACCCAAGCTCCGACCCGATCCGGACCCGGCGTCTTCGACCTCTGGGAGA
rJMSF014N11+ CAACCACTCCTACCCAAGCTCCGACCCGATCCGGACCCGGCGTCTTCGACCTCTGGGAGA
rJMSF003N18+ CAACCACTCCTACCCAAGCTCCGACCCGATCCGGACCCGGCGTCTTCGACCTCTGGGAGA
rJMSF019H06+ CAACCACTCCTACCCAAGCTCCGACCCGATCCGGACCCGGCGTCTTCGACCTCTGGGAGA
____________________________________________________________
consensus CAACCACTCCTACCCAAGCTCCGACCCGATCCGGACCCGGCGTCTTCGACCTCTGGGAGA
. : . : . : . : . : . :
rJMSF001B14+ CTTCCTGCGAAGAAGAACCGGTAATGGAGAGAGTGGAATCCGGAAGAGACCTTCGGGCAA
rJMSF014N11+ CTTCCTGCGAAGAAGAACCGGTAATGGAGAGAGTGGAATCCGGAAGAGACCTTCGGGCAA
rJMSF003N18+ CTTCCTGCGAAGAAGAACCGGTGATGGAGAGAGTGGAATCCGGAAGAGACCTTCGGGCAA
rJMSF019H06+ CTTCCTGCGAAGAAGAACCGGTAATGGAGAGAGTGGAATCCGGAAGAGACCTTCGGGCAA
____________________________________________________________
consensus CTTCCTGCGAAGAAGAACCGGTAATGGAGAGAGTGGAATCCGGAAGAGACCTTCGGGCAA
. : . : . : . : . : . :
rJMSF001B14+ GAATGTACGCCAGATTGAGCAAGGAAAACTCGCTGAAATGAACCGGGTCAAGTCGGGTTA
rJMSF014N11+ GAATGTACGCCAGATTGAGCAAGGAAAACTCGCTGAAATGAACCGGGTCAAGTCGGGTTA
rJMSF003N18+ GAATGTACGCCAGATTGAGCAAGGAAAACTCGCTGAAATGAACCGGGTCAAGTCGGGTTA
rJMSF019H06+ GAATGTACGCCAGATTGAGCAAGGAAAACTCGCTGAAATGAACCGGGTCAAGTCGGGTTA
____________________________________________________________
consensus GAATGTACGCCAGATTGAGCAAGGAAAACTCGCTGAAATGAACCGGGTCAAGTCGGGTTA
. : . : . : . : . : . :
rJMSF001B14+ TCGGATCGGTAGCCTTTTGGATCCATATTTTGCTTCTGACTCTTGTGTGGATATTGTGTT
rJMSF014N11+ TCGGATCGGTAGCCTTTTGGATCCATATTTTGCTTCTGACTCTTGTGTGGATATTGTGTT
rJMSF003N18+ TCGGATCGGTAGCCTTTTGGATCCATATTTTGCTTCTGACTCTTGTGTGGATATTGTGTT
rJMSF019H06+ TCGGATCGGTAGCCTTTTGGATCCATATTTTGCTTCTGACTCTTGTGTGGATATTGTGTT
____________________________________________________________
consensus TCGGATCGGTAGCCTTTTGGATCCATATTTTGCTTCTGACTCTTGTGTGGATATTGTGTT
. : . : . : . : . : . :
rJMSF001B14+ TGACTCAAGATTTATTCAAGATTACGCTTGTAAATAGCGGGAGATTAGGAGTGCTAATCT
rJMSF014N11+ TGACTCAAGATTTATTCAAGATTACGCTTGTAAATAGCGGGAGATTAGGAGTGCTAATCT
rJMSF003N18+ TGACTCAAGATTTATTCAAGATTACGCTTGTAAATAGCGGGAGATTAGGAGTGCTAATCT
rJMSF019H06+ TGACTCAAGATTTATTCAAGATTACGCTTGTAAATAGCGGGAGATTAGGAGTGCTAATCT
____________________________________________________________
consensus TGACTCAAGATTTATTCAAGATTACGCTTGTAAATAGCGGGAGATTAGGAGTGCTAATCT
. : . : . : . : . : . :
rJMSF001B14+ CTATTTTCTGCGCTGCTTAATTTCGAGGTAGAAAAAAAATGGAAAAAAAC
rJMSF014N11+ CTATTTTCTGCGCTGCTTAATTTCGAGGTAGAAAAAAAATGGAAAAAAAC
rJMSF003N18+ CTATTTTCTGCGCTGCTTAATTTCGAGGTAGAAAAAAAATGGAAAAAAAC
rJMSF019H06+ CTATTTTCTGCGCTGCTTAATTTCGAGGTAGAAAAAAAATGGAAAAAAACTTGCATATTT
____________________________________________________________
consensus CTATTTTCTGCGCTGCTTAATTTCGAGGTAGAAAAAAAATGGAAAAAAACTTGCATATTT