Contig 011294:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016K18Sequence524012650 (3)ref|XP_009614965.1|7e-20PREDICTED: putative late blight resistance protein homolog R1B-14 [Nicotiana to700011294 (2)ref|XP_009612668.1|4e-75PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic
JMSF053I01Sequence629014793ref|XP_009612667.1|2e-44PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic878011294 (2)ref|XP_009612668.1|9e-110PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic

Alignment

This contig is upended


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rJMSF053I01+                                ACGATGGGGAGAAGCTAGTGGAGGAGATGTTATCCGCG
                      ____________________________________________________________
consensus                                   ACGATGGGGAGAAGCTAGTGGAGGAGATGTTATCCGCG
 
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rJMSF053I01+          GGTTGTGAGCCAAATATGGTTACCTATAACATCTTCATGACTTCCTTGTGTCGAGATGGA
                      ____________________________________________________________
consensus             GGTTGTGAGCCAAATATGGTTACCTATAACATCTTCATGACTTCCTTGTGTCGAGATGGA
 
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rJMSF053I01+          AAGCTAAACGAGGCAATAAGCCTGCTTAAGATTATGACGGAGAAGGGGGTGGCTCCCAAT
                      ____________________________________________________________
consensus             AAGCTAAACGAGGCAATAAGCCTGCTTAAGATTATGACGGAGAAGGGGGTGGCTCCCAAT
 
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rJMSF053I01+          CAAATCATTTACGATCCACTTATCTGCGCTTTTTGCAAGGAGGGGAGGCTCGATTCGGCC
rJMSF016K18+                                  TGCGCTTTTTGCAAGGAGGGGAGGCTCGATTCGGCC
                      ____________________________________________________________
consensus             CAAATCATTTACGATCCACTTATCTGCGCTTTTTGCAAGGAGGGGAGGCTCGATTCGGCC
 
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rJMSF053I01+          NTTGATCTCGTGGATGCCATGGTTTCAAACGGTTGCTCGCCCGATATAGTGAACTATAAC
rJMSF016K18+          ATTGATCTCGTGGATGCCATGGTTTCAAACGGTTGCTCGCCCGATATAGTGAACTATAAC
                      ____________________________________________________________
consensus             ATTGATCTCGTGGATGCCATGGTTTCAAACGGTTGCTCGCCCGATATAGTGAACTATAAC
 
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rJMSF053I01+          CACATCATTTCCGCAATGTGCAAGAACGGAAACGATGATCTTGCGACGGGACTCATCGAG
rJMSF016K18+          CACATCATTTCCGCAATGTGCAAGAACGGAAACGATGATCTTGCGACGGGACTCATCGAG
                      ____________________________________________________________
consensus             CACATCATTTCCGCAATGTGCAAGAACGGAAACGATGATCTTGCGACGGGACTCATCGAG
 
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rJMSF053I01+          GAGCTCGGTGCAATAGGCTATCCCGTAGATGCAAGTACTTATAGTGCTATGATGTGTGCT
rJMSF016K18+          GAGCTCGGTGCAATAGGCTATCCCGTAGATGCAAGTACTTATAGTGCTATGATGTGTGCT
                      ____________________________________________________________
consensus             GAGCTCGGTGCAATAGGCTATCCCGTAGATGCAAGTACTTATAGTGCTATGATGTGTGCT
 
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rJMSF053I01+          CTATGGAGCAATGGAGAAAGCNCCAAGGCCTTGAATATGGTTCCTCAAATGATAGACAAA
rJMSF016K18+          CTATGGAGCAATGGAGAAAGCNCCAAGGCCTTGAATATGGTTCCTCAAATGATAGACAAA
                      ____________________________________________________________
consensus             CTATGGAGCAATGGAGAAAGCNCCAAGGCCTTGAATATGGTTCCTCAAATGATAGACAAA
 
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rJMSF053I01+          CGGGTTTATCCCGACGAGACTACATATGGTGCNTTGGTGTCGCGTTTATGCAAAGGCGGG
rJMSF016K18+          CGGGTTTATCCCGACGAGACTACATATGGTGCNTTGGTGTCGCGTTTATGCAAAGGCGGG
                      ____________________________________________________________
consensus             CGGGTTTATCCCGACGAGACTACATATGGTGCNTTGGTGTCGCGTTTATGCAAAGGCGGG
 
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rJMSF053I01+          ATGGTGGACGAGGCTCTACNTTTGTTAGATGTTATGGAGAGGTACGGTTTTCCNCCCNCC
rJMSF016K18+          ATGGTGGACGAGGCTCTACATTTGTTAGATGTTATGGAGAGGTACGGTTTTCCNCCCNCC
                      ____________________________________________________________
consensus             ATGGTGGACGAGGCTCTACATTTGTTAGATGTTATGGAGAGGTACGGTTTTCCNCCCNCC
 
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rJMSF053I01+          GTCGTGGTTTACAATGCTGTGTTGCTTGGGCTGTGCAAATCTCATAGATTAGATGAGGCA
rJMSF016K18+          GTCGTGGTTTACAATGCTGTGTTGCTTGGGCTGTGCAAATCTCATAGATTAGATGAGGCA
                      ____________________________________________________________
consensus             GTCGTGGTTTACAATGCTGTGTTGCTTGGGCTGTGCAAATCTCATAGATTAGATGAGGCA
 
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rJMSF053I01+          ATTGATGTCCTAGAAGAAATGACTGAAAGGGGCTGCCAGCCAAATGAAAAAACTTACNTT
rJMSF016K18+          ATTGATGTCCTAGAAGGAATGACTGAAAGGGGCTGCCAGCCAAATGAAAAAACTTACNTT
                      ____________________________________________________________
consensus             ATTGATGTCCTAGAAGGAATGACTGAAAGGGGCTGCCAGCCAAATGAAAAAACTTACNTT
 
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rJMSF053I01+          ATACTAATTAAAGGCNTTGGTTTTCATGGATGGAGAGACGAGGC                
rJMSF016K18+          ATACTAATTAAAGGCNTTGGTTTTCATGGATGGAGAGACGAGGCGATTAAGCTGGAAACC
                      ____________________________________________________________
consensus             ATACTAATTAAAGGCNTTGGTTTTCATGGATGGAGAGACGAGGCGATTAAGCTGGAAACC
 
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rJMSF016K18+          NCTCTTTTCCAAATGAATGCTATTTCAAGGATAGGGAATCAAGCTTTTGTTTGGTAATTG
                      ____________________________________________________________
consensus             NCTCTTTTCCAAATGAATGCTATTTCAAGGATAGGGAATCAAGCTTTTGTTTGGTAATTG
 
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rJMSF016K18+          GTCTTGCNCTAACTATTGCCCCATATTTTTTTTTTGGCAAAAATGTAATAATTTTTGAGG
                      ____________________________________________________________
consensus             GTCTTGCNCTAACTATTGCCCCATATTTTTTTTTTGGCAAAAATGTAATAATTTTTGAGG