Contig 011281:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004C22Sequence371011281 (4)ref|XP_009605012.1|125PREDICTED: uncharacterized protein LOC104099663 [Nicotiana tomentosiformis] ref|172011281 (4)ref|XP_006453643.1|5e-16hypothetical protein CICLE_v10010826mg [Citrus clementina] ref|XP_006453644.1| h
JMSF013G05Sequence522004654 (57)ref|XP_010052458.1|3e-37PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic [Eucalyptus gran549011281 (4)ref|XP_009605012.1|160PREDICTED: uncharacterized protein LOC104099663 [Nicotiana tomentosiformis] ref|
JMSF026J07Sequence685011281 (4)ref|XP_009605012.1|291PREDICTED: uncharacterized protein LOC104099663 [Nicotiana tomentosiformis] ref|399006960 (14)ref|XP_002282422.1|2e-50PREDICTED: mannose-1-phosphate guanylyltransferase 1 [Vitis vinifera]

Alignment

This contig is upended


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JMSF004C22-                                          GGCCATACTGCTATCATGCTTTGTCTCAA
JMSF026J07-                                          GGCCATACTGCTATCATGCTTTGTCTCAA
                      ____________________________________________________________
consensus                                            GGCCATACTGCTATCATGCTTTGTCTCAA
 
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JMSF004C22-           AGAAGCATAATTTTACTCAGCATAAATCTTCCACTCCTCAGCCTGAAAATCACTTCAAAA
JMSF026J07-           AGAAGCATAATTTTACTCAGCATAAATCTTCCACTCCTCAGCCTGAAAATCACTTCAAAA
                      ____________________________________________________________
consensus             AGAAGCATAATTTTACTCAGCATAAATCTTCCACTCCTCAGCCTGAAAATCACTTCAAAA
 
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JMSF004C22-           AGCAGGATCACTTGAGCAGTAGATCCATCTTCCGATCAGTTCCTTCTCAGATCTGGCCTC
JMSF026J07-           AGCAGGATCACTTGAGCAGTAGATCCATCTTCCGATCAGTTCCTTCTCAGATCTGGCCTC
                      ____________________________________________________________
consensus             AGCAGGATCACTTGAGCAGTAGATCCATCTTCCGATCAGTTCCTTCTCAGATCTGGCCTC
 
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JMSF004C22-           ACGAGAGATGTCAAGAAGATCTGGGACTTGCTTGAGGTGTTGTTTGGTGATCTTCGCTGT
JMSF026J07-           ACGAGAGATGTCAAGAAGATCTGGGACTTGCTTGAGGTGTTGTTTGGTGATCTTCGCTGT
                      ____________________________________________________________
consensus             ACGAGAGATGTCAAGAAGATCTGGGACTTGCTTGAGGTGTTGTTTGGTGATCTTCGCTGT
 
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JMSF004C22-           GGTCTCAGCTCTGTGTGTATCTGGACCTGCCTTTTATTGGAAATTTAAGAAAGCTTTAAA
JMSF026J07-           GGTCTCAGCTCTGTGTGTATCTGGACCTGCCTTTTATTGGAAATTTAAGAAAGCTTTAAA
                      ____________________________________________________________
consensus             GGTCTCAGCTCTGTGTGTATCTGGACCTGCCTTTTATTGGAAATTTAAGAAAGCTTTAAA
 
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JMSF004C22-           GCTAAAGGCCTCTTGCCTTCCTTGCAAATGCGATTGCTCTCCTACTCTCTCCCTTTTTGA
JMSF026J07-           GCTAAAGGCCTCTTGCCTTCCTTGCAAATGCGATTGCTCTCCTACTCTCTCCCTTTTTGA
                      ____________________________________________________________
consensus             GCTAAAGGCCTCTTGCCTTCCTTGCAAATGCGATTGCTCTCCTACTCTCTCCCTTTTTGA
 
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JMSF004C22-           TGTTGCTCCTGGTCT                                             
JMSF026J07-           TGTTGCTCCTGGTCTACTTAATCTCTCAGTTACAGACTGCGGGAAAGATGATCCCGCTCT
rJMSF013G05+                    GGTCTACTTAATCTCTCAGTTACAGACTGCGGGAAAGATGATCCCGCTCT
                      ____________________________________________________________
consensus             TGTTGCTCCTGGTCTACTTAATCTCTCAGTTACAGACTGCGGGAAAGATGATCCCGCTCT
 
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JMSF026J07-           GAAAGAAGAGATGGAGAAGCAGTTCGTGGACTTGTTATCGGAGGAGTTAAAGCTGCAGGA
rJMSF013G05+          GAAAGAAGAGATGGAGAATCAGTTCCTGGACTTGTTCTCGGAGGAGTTAAAGCTGCAGGA
                      ____________________________________________________________
consensus             GAAAGAAGAGATGGAGAATCAGTTCGTGGACTTGTTCTCGGAGGAGTTAAAGCTGCAGGA
 
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rJMSF004C22+                                                  TTCACGGAAGCCAAACGCCT
JMSF026J07-           GGCCGTTGACAAGGAACATGTGAACCGTATGAACATGACCTTCACGGAAGCCAAACGCCT
rJMSF013G05+          GGCCGTTGACAAGGAACATGTGANCCGTATGAACATGACCTTCACGGAAGCCAAACGCCT
                      ____________________________________________________________
consensus             GGCCGTTGACAAGGAACATGTGAACCGTATGAACATGACCTTCACGGAAGCCAAACGCCT
 
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rJMSF004C22+          CGCCTCCGAATACCAGAAAGAATCCGNGNAATGCAATGNTGCAACCGAGACTTGTGAAGT
JMSF026J07-           CGCCTCTGAATACCAGAAAGAATCCGAGAAATGCAATGCTGCAACCGAGACTTGTGAAGT
rJMSF013G05+          CGCNTNTGAATACCAGAAAGAATCCGAGAAANGCAATGCTGCAACCNNGNCTTGTGAAGT
                      ____________________________________________________________
consensus             CGCCTCTGAATACCAGAAAGAATCCGAGAAATGCAATGCTGCAACCGAGACTTGTGAAGT
 
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rJMSF004C22+          AGGGNGAGANCGNGCCGAGGTGTTGCTNGCCAAAGACCGGAAGCTGACNNCGCTGTGGGA
JMSF026J07-           AGGGAGAGAGCGGGCCGAGGTGTTGCTTGCCAAAGAACGGAAGCTGACATCGCTGTGGGA
rJMSF013G05+          AGNGAGAGAGCGNGCNGAGGTGTNGCTTNCCNAAGAACGGAAGCTNACATCGCTGTGGGA
                      ____________________________________________________________
consensus             AGGGAGAGAGCGGGCCGAGGTGTTGCTTGCCAAAGAACGGAAGCTGACATCGCTGTGGGA
 
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rJMSF004C22+          GAAACGAGCTCGCCAAATGNGATGGTCGGTCG                            
JMSF026J07-           GAAACGAGCTCGCCAAATGGGATGGTCGGTCGAATAANCTATAGAAACAAGTAGTG    
rJMSF013G05+          GAAGCGAGCTCGCCAAATGGGATGGTCGGTCGAATAAACTATNGAAACAAGTAGTGTATT
                      ____________________________________________________________
consensus             GAAACGAGCTCGCCAAATGGGATGGTCGGTCGAATAAACTATAGAAACAAGTAGTGTATT
 
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rJMSF013G05+          CATNTGCTTCACAAGTGTGTATATTTGCAGAATAGCAGACAAGCNAATTTNGTCNGTGTT
                      ____________________________________________________________
consensus             CATNTGCTTCACAAGTGTGTATATTTGCAGAATAGCAGACAAGCNAATTTNGTCNGTGTT
 
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rJMSF013G05+          ATAGTGCATCAGACCCCAATTTGTTCTNTGATGTTAATNGATACTGCATTCNCTATATGT
                      ____________________________________________________________
consensus             ATAGTGCATCAGACCCCAATTTGTTCTNTGATGTTAATNGATACTGCATTCNCTATATGT
 
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rJMSF013G05+          TANNGAGTNCAAAAATACAATNACAACTATCTTNAAATTCGCGGGATCGAACTTTCACAA
                      ____________________________________________________________
consensus             TANNGAGTNCAAAAATACAATNACAACTATCTTNAAATTCGCGGGATCGAACTTTCACAA