clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF008N11 | Sequence | 287 | 003650 (2) | ref|XP_004252009.1| | 2e-08 | PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X1 [Solanum lycop | 750 | 011252 (3) | ref|XP_009629875.1| | 2e-63 | PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Nicotiana tom |
JMSF019P15 | Sequence | 473 | 003650 (2) | ref|XP_004252009.1| | 3e-08 | PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X1 [Solanum lycop | 788 | 011252 (3) | ref|XP_009629875.1| | 2e-71 | PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Nicotiana tom |
JMSF040P18 | Sequence | 628 | 002267 (2) | ref|XP_010112862.1| | 8e-18 | hypothetical protein L484_014712 [Morus notabilis] gb|EXC34985.1| hypothetical p | 859 | 011252 (3) | ref|XP_009629875.1| | 9e-73 | PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Nicotiana tom |
This contig is upended
. : . : . : . : . : . :
rJMSF040P18+ GGGGAAGGT
____________________________________________________________
consensus GGGGAAGGT
. : . : . : . : . : . :
rJMSF040P18+ ATAAGGAGTACAGAGAAAGTCAAGATGAGAAGACAGACCATAGGATGAATTTCGGAGACC
____________________________________________________________
consensus ATAAGGAGTACAGAGAAAGTCAAGATGAGAAGACAGACCATAGGATGAATTTCGGAGACC
. : . : . : . : . : . :
rJMSF040P18+ ATAAAAGACATGCTTATGAAGAGTCTAGGGGATGCCATGATGAGTCAATTTCAACTGATA
____________________________________________________________
consensus ATAAAAGACATGCTTATGAAGAGTCTAGGGGATGCCATGATGAGTCAATTTCAACTGATA
. : . : . : . : . : . :
rJMSF040P18+ CTAGGGAATTGGGTGTTGAGAAGTATATCAAAGAGGACAAGAAGGAATTTGATGCTAGAA
____________________________________________________________
consensus CTAGGGAATTGGGTGTTGAGAAGTATATCAAAGAGGACAAGAAGGAATTTGATGCTAGAA
. : . : . : . : . : . :
rJMSF040P18+ ACAATTTGAAGGAACAGTGCGCTAAGAGGTCCAAGTTTGATACCATTGATGGGGAGACAA
____________________________________________________________
consensus ACAATTTGAAGGAACAGTGCGCTAAGAGGTCCAAGTTTGATACCATTGATGGGGAGACAA
. : . : . : . : . : . :
rJMSF040P18+ ACCGTGGAAAAGATGTTTTGAAGGCAACAACCTTCGCTGATGAAAAGCAGTCTTCAACTT
____________________________________________________________
consensus ACCGTGGAAAAGATGTTTTGAAGGCAACAACCTTCGCTGATGAAAAGCAGTCTTCAACTT
. : . : . : . : . : . :
rJMSF040P18+ CCAAGCATGATGAAGTCACTTTGGAGCAGGGAGTGAAAGACTCTGATATAGATGCTGCAA
rJMSF019P15+ GAAGTCACTTTGGAGCAGGGTGTGAAAGACTCTGATATAGATGCTGCAA
rJMSF008N11+ GAAGTCACTTTGGAGCAGGGTGTGAAAGACTCTGATATAGATGCTGCAA
____________________________________________________________
consensus CCAAGCATGATGAAGTCACTTTGGAGCAGGGTGTGAAAGACTCTGATATAGATGCTGCAA
. : . : . : . : . : . :
rJMSF040P18+ AAGTTGCTGCTATGAAGGCTGCTGAATTAGTCAATAGGAACCTTATTGGAACTGGTTACA
rJMSF019P15+ AAGTTGCTGCCATGAAGGCCGCTGAATTAGTTAATAGGAATCTTATTGGAACCGGTTACA
rJMSF008N11+ AAGTTGCTGCCATGAAGGCCGCTGAATTAGTTAATAGGAATCTTATTGGAACCGGTTACA
____________________________________________________________
consensus AAGTTGCTGCCATGAAGGCCGCTGAATTAGTTAATAGGAATCTTATTGGAACCGGTTACA
. : . : . : . : . : . :
rJMSF040P18+ TGACTGCTGATCAGAAGAAGAAGCTGTTGTGGGGAAGTAAAAAGAACACTACCAATTCTG
rJMSF019P15+ TGACTGCTGATCAGAAGAAGAAGCTGTTGTGGGGAAGTAAAAAGAGCACAAATGATACTG
rJMSF008N11+ TGACTGCTGATCAGAAGAAGAAGCTGTTGTGGGGAAGTAAAAAGAGCACAAATGATACTG
____________________________________________________________
consensus TGACTGCTGATCAGAAGAAGAAGCTGTTGTGGGGAAGTAAAAAGAGCACAAATGATACTG
. : . : . : . : . : . :
rJMSF040P18+ AAGAGTCTGCACACCGCTGGGATACTTCAATGTTTGATGATTGTGAAAGACAGGAAAAGT
rJMSF019P15+ AAAAGTCAGCTCATCACTGGGATACATCAACATTTGGTGACCGTGAACGACAGGAAAAAT
rJMSF008N11+ AAAAGTCAGCTCATCACTGGGATACATCAACATTTGGTGACCGTGAACGACAGGAAAAAT
____________________________________________________________
consensus AAAAGTCAGCTCATCACTGGGATACATCAACATTTGGTGACCGTGAACGACAGGAAAAAT
. : . : . : . : . : . :
rJMSF040P18+ TCAACAAACTCATGGGTGTGAAGGGCAATATGAAGATGGAGCACAAACCTGGAATCCAAG
rJMSF019P15+ TCAACAAACTCATGGGTGTGAAGGGTGATGCCAAGGGGGAGCTGAAACCCGACATCCATG
rJMSF008N11+ TCAACAAACTCATGGGTGTGAAGGGTGATGCCAAGGGGGAGCTGAAACCCGACATCCATG
____________________________________________________________
consensus TCAACAAACTCATGGGTGTGAAGGGTGATGCCAAGGGGGAGCTGAAACCCGACATCCATG
. : . : . : . : . : . :
rJMSF040P18+ ATGCAGAGAAGCAGAAGGAGCTGCAGATGGACTTGGAGAAGCAGTACACTGCTGGACTTC
rJMSF019P15+ ATGCAGAGAAGCAAAGAGAGCTTCAGATAGACTTGGAGAAGCAGTACACTGCTGGGCTCC
rJMSF008N11+ ATGCAGAGAAGCAAAGAGAGCTTCAGATAGACTTGGAGAAGCAGTACACTGCTGGGCTCC
____________________________________________________________
consensus ATGCAGAGAAGCAAAGAGAGCTTCAGATAGACTTGGAGAAGCAGTACACTGCTGGGCTCC
. : . : . : . : . : . :
rJMSF040P18+ GTCGAAGAGATGG
rJMSF019P15+ GTCGAAGAGATGGCCGCACAGTTGGACTCGGACTCTAAGCATACGACTTGATTGTCTAGC
rJMSF008N11+ GTCGAAGAGATGGCCGCACAGTTGGACTCGGACTCTAAGCATACGACTTGATTGTCTAGC
____________________________________________________________
consensus GTCGAAGAGATGGCCGCACAGTTGGACTCGGACTCTAAGCATACGACTTGATTGTCTAGC
. : . : . : . : . : . :
rJMSF019P15+ ACGTTCATCCACGACACAAAGAAGCAAAGGGAGCTCCAGACGGACTTGTAGAAGCAGTAC
rJMSF008N11+ ACGTTCATCCACGACACAAAGAAGCAAAGGGAGCTCCAGACGGACTTGTAGAAGCAGTAC
____________________________________________________________
consensus ACGTTCATCCACGACACAAAGAAGCAAAGGGAGCTCCAGACGGACTTGTAGAAGCAGTAC
. : . : . : . : . : . :
rJMSF019P15+ ACATCGGGGAGATGGTCGATTTGATTGTCTGGTGTGTTCATTAAACCGTAGCAAAACACA
rJMSF008N11+ ACATCGGGGAGATGGTCGATTTGATTGTCTGGTGTGTTCATTAAACCGTAGCAAAACACA
____________________________________________________________
consensus ACATCGGGGAGATGGTCGATTTGATTGTCTGGTGTGTTCATTAAACCGTAGCAAAACACA
. : . : . : . : . : . :
rJMSF019P15+ TTATATTGTACTATTTTGCACGTACGTATGATGTTTCTTGTGGTGCTGGACATCCCTAAT
rJMSF008N11+ TTATATTGTACTATTTTGCACGTACGTATGATGTTTCTTGTGGTGCTGGACATCCCTAAT
____________________________________________________________
consensus TTATATTGTACTATTTTGCACGTACGTATGATGTTTCTTGTGGTGCTGGACATCCCTAAT
. : . : . : . : . : . :
rJMSF019P15+ CTTGTGGTGCAGCTCAGAAT
rJMSF008N11+ CTTGTGGTGCAGCTCAGAATTGCTCCTGGTGAGGATTATTAACAAAGCATTTATATGACA
____________________________________________________________
consensus CTTGTGGTGCAGCTCAGAATTGCTCCTGGTGAGGATTATTAACAAAGCATTTATATGACA