Contig 011251:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008K03Sequence319002467 (2)ref|XP_009777127.1|1e-20PREDICTED: uncharacterized protein LOC104226766 isoform X1 [Nicotiana sylvestri805011251 (2)ref|XP_009777128.1|5e-66PREDICTED: uncharacterized protein LOC104226766 isoform X2 [Nicotiana sylvestri
JMSF050E17Sequence666002467 (2)ref|XP_006344993.1|2e-34PREDICTED: mediator of RNA polymerase II transcription subunit 1-like isoform X805011251 (2)ref|XP_009777128.1|2e-66PREDICTED: uncharacterized protein LOC104226766 isoform X2 [Nicotiana sylvestri

Alignment

This contig is upended


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rJMSF050E17+                                                  TCCATAGATGAGAATCATGG
                      ____________________________________________________________
consensus                                                     TCCATAGATGAGAATCATGG
 
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rJMSF050E17+          AAGTCAGCATANTTCTAGTTNGGATTCTCATCATGGGAGAAATGAAAGTGTTGTTCAATC
rJMSF008K03+                                             GGAGAAATGAAAGTGTTGTTCNATC
                      ____________________________________________________________
consensus             AAGTCAGCATANTTCTAGTTNGGATTCTCATCATGGGAGAAATGAAAGTGTTGTTCAATC
 
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rJMSF050E17+          AAGTTCGCAGGCAGAGTTGTTGGGTGTAGATAATTCCAAGGCAAACCTGGAGACATCCAG
rJMSF008K03+          AAGTTCGCAGGCAGAGTTGTTGGGTGTAGATAATTCCAAGGCAANCCTGGAGACATCCAG
                      ____________________________________________________________
consensus             AAGTTCGCAGGCAGAGTTGTTGGGTGTAGATAATTCCAAGGCAAACCTGGAGACATCCAG
 
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rJMSF050E17+          ACCCCCTGCAAATTGCCGAGCATGGAGGCCTGATGATGCATTTCGTCCTCAGAGTCTGCC
rJMSF008K03+          ACCCCCTGCAAATTGCCGAGCATGGAGGCCTGATGATGCATTTCGTCCTCAGAGTCTGCC
                      ____________________________________________________________
consensus             ACCCCCTGCAAATTGCCGAGCATGGAGGCCTGATGATGCATTTCGTCCTCAGAGTCTGCC
 
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rJMSF050E17+          CAATTTGTCCAAACAGTATAGTTTTCCTATGAATTCAGAGCGACATTACCGTGGAGGGTC
rJMSF008K03+          CAATTTGTCCAAACAGTATAGTTTTCCTATGAATTCAGAGCGACATTACCGTGGAGGGTC
                      ____________________________________________________________
consensus             CAATTTGTCCAAACAGTATAGTTTTCCTATGAATTCAGAGCGACATTACCGTGGAGGGTC
 
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rJMSF050E17+          TGTATGGGGTTGTAGGAATTTATCAGTACCAACATCATGTCCTATTTGCTGTGAAGATTT
rJMSF008K03+          TGTATGGGGTTGTAGGAATTTATCAGTACCAACATCATGTCCTATTTGCTGTGAAGATTT
                      ____________________________________________________________
consensus             TGTATGGGGTTGTAGGAATTTATCAGTACCAACATCATGTCCTATTTGCTGTGAAGATTT
 
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rJMSF050E17+          AGATTTCACAGACACAAGTTTTCTCCCTTGTTCATGTGGGTTTAGGCTGTGCCTTTTCTG
rJMSF008K03+          AGATTTCACAGACACAAGTTTTCTCCCTTGTTCATGTGGGTTTAGGCTGTGCCTTTTCTG
                      ____________________________________________________________
consensus             AGATTTCACAGACACAAGTTTTCTCCCTTGTTCATGTGGGTTTAGGCTGTGCCTTTTCTG
 
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rJMSF050E17+          CCACAAGAGGATTCTTGAGGAGGATGGACGCTGTCCTGGTTGCAGGAAGCAGTATGACTG
rJMSF008K03+          CCACAAGAGGATTCTTGAGGAGGATGGACGCTGTCCTGGTTGCAGGAAGCAGTATGACTG
                      ____________________________________________________________
consensus             CCACAAGAGGATTCTTGAGGAGGATGGACGCTGTCCTGGTTGCAGGAAGCAGTATGACTG
 
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rJMSF050E17+          TGACCCTGATGAGGGGGAAGCAGCTGTTGATTCTGGCAGCCCAGCAATCCGATTGGCTCG
rJMSF008K03+          TGACCCTGATGAGGGGGAAGCAGCTGTTGATTCTGGCAGCCCAGCAATCCGATTGGCTCG
                      ____________________________________________________________
consensus             TGACCCTGATGAGGGGGAAGCAGCTGTTGATTCTGGCAGCCCAGCAATCCGATTGGCTCG
 
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rJMSF050E17+          TTCGTGTAGTATGATCTCTAGGTCCTAAGGAAGAATCTCTTCCCAATGCACATGTATGCT
rJMSF008K03+          TTCGTGTAGTATGATCTCTAGGTCCTAAGGAAGAATCTCTTCCCAATGCACATGTATGCT
                      ____________________________________________________________
consensus             TTCGTGTAGTATGATCTCTAGGTCCTAAGGAAGAATCTCTTCCCAATGCACATGTATGCT
 
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rJMSF050E17+          AGGTCCCTTTTACAGTGTGACTTAAGTGTGTTCTTACTCTTGTTAGACTATCATTAGACT
rJMSF008K03+          AGGTCCCTTTTACAGTGTGACTTAAGTGTGTTCTTACTCTTGTTAGACTATCATTAGACT
                      ____________________________________________________________
consensus             AGGTCCCTTTTACAGTGTGACTTAAGTGTGTTCTTACTCTTGTTAGACTATCATTAGACT
 
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rJMSF050E17+          GATTTTTCATAGTAGCACTAGACATTGATATAGGAATATGATTCTGGAAAGCACAAGGGA
rJMSF008K03+          GATTTTTCATAGTAGCACTAGACATTGATATAGGAATATGATTCTGGAAAGCACAAGGGA
                      ____________________________________________________________
consensus             GATTTTTCATAGTAGCACTAGACATTGATATAGGAATATGATTCTGGAAAGCACAAGGGA
 
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rJMSF050E17+          ATTATTTTGGTTCCCTTGTGATTTTTCATCGGATGTATGGTGCATGTGCTGAATTAGAAG
rJMSF008K03+          ATTATTTTGGTTCCCTTGTGATTTTTCATCGGATGTATGGTGCATGTGCTGAATTAGAAG
                      ____________________________________________________________
consensus             ATTATTTTGGTTCCCTTGTGATTTTTCATCGGATGTATGGTGCATGTGCTGAATTAGAAG
 
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rJMSF050E17+          AAGAATATTGCTTATGTGAGTGAGTACTGAGTAGGCTTGGTGGTATAGAAATT       
rJMSF008K03+          AAGAATATTGCTTATGTGAGTGAGTACTGAGTAGGCTTGGTGGTATAGAAATTTAAAATG
                      ____________________________________________________________
consensus             AAGAATATTGCTTATGTGAGTGAGTACTGAGTAGGCTTGGTGGTATAGAAATTTAAAATG
 
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rJMSF008K03+          CAGAATTTGACTGCAATAAAGTTCTCTTTGTTGGTTTGATTTTGCACTTGTCCTATCAAT
                      ____________________________________________________________
consensus             CAGAATTTGACTGCAATAAAGTTCTCTTTGTTGGTTTGATTTTGCACTTGTCCTATCAAT