Contig 011247:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006B14Sequence288010572 (2)ref|XP_004247592.1|4e-30PREDICTED: E3 ubiquitin-protein ligase CHIP [Solanum lycopersicum]239011247 (2)
JMSF006G12Sequence275001607 (9)ref|XP_006344769.1|3e-27PREDICTED: nucleolar protein 56-like [Solanum tuberosum]534011247 (2)ref|XP_009773830.1|1e-27PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Nicotiana sylvest

Alignment

This contig is upended


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rJMSF006G12+                                                                    GG
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consensus                                                                       GG
 
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rJMSF006G12+          TCAAGGATCAAGGAAATGGAAACATGGTCAAAGTGATGGATTTTTCATTCAATNTGAATC
                      ____________________________________________________________
consensus             TCAAGGATCAAGGAAATGGAAACATGGTCAAAGTGATGGATTTTTCATTCAATNTGAATC
 
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rJMSF006G12+          ACCTTCTACACGCAAGCTCTGGTTTATTCCTAGTTCAACTGAGAACGGAAAAATCTTGTG
                      ____________________________________________________________
consensus             ACCTTCTACACGCAAGCTCTGGTTTATTCCTAGTTCAACTGAGAACGGAAAAATCTTGTG
 
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rJMSF006G12+          CAGGGATCCGGTGTCTTNGGATATAAGTGTACATGAACTTATTCCTCGCCTGTTCAAGCA
                      ____________________________________________________________
consensus             CAGGGATCCGGTGTCTTNGGATATAAGTGTACATGAACTTATTCCTCGCCTGTTCAAGCA
 
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rJMSF006G12+          AATATAGGCAATACTGGTCTGAAGTCTTGGTCAGAACTTATTCTGTGGCTGATGACCTTG
                      ____________________________________________________________
consensus             AATATAGGCAATACTGGTCTGAAGTCTTGGTCAGAACTTATTCTGTGGCTGATGACCTTG
 
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rJMSF006G12+          AAAAAACTGGGAGTCCTATGGTTACGTAGACAAGATCCCTGTAATGCTGCTTTGGTACGG
                      ____________________________________________________________
consensus             AAAAAACTGGGAGTCCTATGGTTACGTAGACAAGATCCCTGTAATGCTGCTTTGGTACGG
 
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rJMSF006G12+          TGCAAGGTACAAAATTGGAAGACAGCACTACAGCAGCTTCACAACACAGGAATGCGTAGG
rJMSF006B14+           GCAAGGTACAAAATTGGAAGACAGCACTACAGCAGCTTCACAACACAGGAANGNGTAGG
                      ____________________________________________________________
consensus             TGCAAGGTACAAAATTGGAAGACAGCACTACAGCAGCTTCACAACACAGGAATGCGTAGG
 
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rJMSF006G12+          ACTCCTACATGTATGCATTATCGAACCTTGGTGAGAGTTTGGGTGAGCTTTTTATGCAGT
rJMSF006B14+          ACTCCTACATGTATGCATTNTCGAACCTTGGTGAGAGTTNGGGTGAGCNTGTTATGCAGT
                      ____________________________________________________________
consensus             ACTCCTACATGTATGCATTATCGAACCTTGGTGAGAGTTTGGGTGAGCTTTTTATGCAGT
 
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rJMSF006G12+          NGTGTTTTCATGGCAATTTCACCACTAAGTTTAATT-TTGCAAGTCNGATCT-CTTCTTG
rJMSF006B14+          NGTGTTTTCATGGCAANTTCACCANTAAGTTTAATTNCNGCAAGTCTGATCTGCTTCTNG
                      ____________________________________________________________
consensus             NGTGTTTTCATGGCAATTTCACCACTAAGTTTAATTNTTGCAAGTCTGATCTGCTTCTTG
 
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rJMSF006G12+          TATTTGCGAGCCTTGATTGTGACGAATTGCAGATTTAAAAAATT                
rJMSF006B14+          TATTTGCGAGCCTTGATTGTGATGAATTGCAGANTTAAAAAATTNGGAATGCTTCAGTTT
                      ____________________________________________________________
consensus             TATTTGCGAGCCTTGATTGTGATGAATTGCAGATTTAAAAAATTNGGAATGCTTCAGTTT