Contig 011246:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006A17Sequence237013228 (6)404011246 (2)ref|XP_009760349.1|2e-15PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana sylvestris]
JMSF026B23Sequence621000603 (5)ref|XP_006367734.1|3e-115PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum]724011246 (2)ref|XP_009760349.1|7e-139PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF026B23+                 ACACAGAGCCAGCGGTGGATTCCAATTGAAGAAAGGACTAAATGGCCTTCCCG
                      ____________________________________________________________
consensus                    ACACAGAGCCAGCGGTGGATTCCAATTGAAGAAAGGACTAAATGGCCTTCCCG
 
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rJMSF026B23+          GGCTAGATTGAGCCCAATGGAACTTAAAGTGCATGGTTTGCAGTCTGAAGATCTTGCTGA
                      ____________________________________________________________
consensus             GGCTAGATTGAGCCCAATGGAACTTAAAGTGCATGGTTTGCAGTCTGAAGATCTTGCTGA
 
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rJMSF026B23+          AGATTCTCTTAACTGGAACTCCGCAGTTAACAACTATTGGTCACTGCTCTCACCGTTAAT
                      ____________________________________________________________
consensus             AGATTCTCTTAACTGGAACTCCGCAGTTAACAACTATTGGTCACTGCTCTCACCGTTAAT
 
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rJMSF026B23+          CTTCTCTGATCATCCAAAGAGACCCGGGGACGAGGATCCTTCCCCGCCCTATAACATGCT
                      ____________________________________________________________
consensus             CTTCTCTGATCATCCAAAGAGACCCGGGGACGAGGATCCTTCCCCGCCCTATAACATGCT
 
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rJMSF026B23+          TAGGAATGTTTTAGACATGAATGCTCATTTCGGTGGTTTCAACGCTGCTTTGTTGGAAGC
                      ____________________________________________________________
consensus             TAGGAATGTTTTAGACATGAATGCTCATTTCGGTGGTTTCAACGCTGCTTTGTTGGAAGC
 
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rJMSF026B23+          TGGAAAATCTGTGTGGGTCATGAATGTGATCCCCACCAGTGCCCCCAATTACCTTCCTCT
                      ____________________________________________________________
consensus             TGGAAAATCTGTGTGGGTCATGAATGTGATCCCCACCAGTGCCCCCAATTACCTTCCTCT
 
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rJMSF026B23+          AATCCTTGATCGGGGATTTGTTGGTGTATTACATGATTGGTGTGAACCATTTCCAACGTA
                      ____________________________________________________________
consensus             AATCCTTGATCGGGGATTTGTTGGTGTATTACATGATTGGTGTGAACCATTTCCAACGTA
 
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rJMSF026B23+          TCCAAGAACTTATGATCTAGTGCATGCTGACGGGCTTCTATCGCTTGAATTCACTCATCA
                      ____________________________________________________________
consensus             TCCAAGAACTTATGATCTAGTGCATGCTGACGGGCTTCTATCGCTTGAATTCACTCATCA
 
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rJMSF026B23+          TAGCAGATGTGGGATGCAAGATCTGTTCACTGAGATAGATCGTGTACTTCGTCCAGAGGG
                      ____________________________________________________________
consensus             TAGCAGATGTGGGATGCAAGATCTGTTCACTGAGATAGATCGTGTACTTCGTCCAGAGGG
 
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rJMSF026B23+          TTGGTTTATCCTACGCGACACAGTTCCTCTCGTCGAATTAGCAAGAGTCCACGCAGCACG
                      ____________________________________________________________
consensus             TTGGTTTATCCTACGCGACACAGTTCCTCTCGTCGAATTAGCAAGAGTCCACGCAGCACG
 
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rJMSF026B23+          GTTGAAATGGGATGCTCGGGTTGCAGAGATCGAGAGCACTAGCGATGAGAAACTCCTAGT
rJMSF006A17+          GTTGAAATGGGATGCTCGGGTTGCAGAGATCGAGAGCACTAGCGATGAGAAACTCCTAGT
                      ____________________________________________________________
consensus             GTTGAAATGGGATGCTCGGGTTGCAGAGATCGAGAGCACTAGCGATGAGAAACTCCTAGT
 
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rJMSF026B23+          TTGCCAGAAGCCTTTCATCCGAAGACAAGCAAGCTAAAACTGTGAGGGTGATCATGATTG
rJMSF006A17+          TTGCCAGAAGCCTTTCATCCGAAGACAAGCAAGCTAAAACTGTGAGGGTGATCATGATTG
                      ____________________________________________________________
consensus             TTGCCAGAAGCCTTTCATCCGAAGACAAGCAAGCTAAAACTGTGAGGGTGATCATGATTG
 
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rJMSF026B23+          CAGATGGTAAT                                                 
rJMSF006A17+          CAGATGGTAATTTATACATTCATTTTAAGGATCTGAATTCACAGGAGATAAAATTCCANC
                      ____________________________________________________________
consensus             CAGATGGTAATTTATACATTCATTTTAAGGATCTGAATTCACAGGAGATAAAATTCCANC
 
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rJMSF006A17+          CAAAAAAAGAAAAAAAAGAAAAAGATGGAATTCAAAGTTTTGAGGAAAAGCAAGGAAAGG
                      ____________________________________________________________
consensus             CAAAAAAAGAAAAAAAAGAAAAAGATGGAATTCAAAGTTTTGAGGAAAAGCAAGGAAAGG
 
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rJMSF006A17+          AAGNGAGGTTCTGTGGAGCCNTAAGGTATACATAGGACANTGTAATTAGAGAAAAGTTTA
                      ____________________________________________________________
consensus             AAGNGAGGTTCTGTGGAGCCNTAAGGTATACATAGGACANTGTAATTAGAGAAAAGTTTA
 
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rJMSF006A17+          GGACTTAGTTTCCCTCTCTCAGTTTGAGTATACANCCATCCATGTATTCATCTTACGTAA
                      ____________________________________________________________
consensus             GGACTTAGTTTCCCTCTCTCAGTTTGAGTATACANCCATCCATGTATTCATCTTACGTAA