Contig 011244:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004J04Sequence222011244 (4)342011244 (4)
JMSF023I22Sequence663011244 (4)ref|XP_009763301.1|154PREDICTED: uncharacterized protein LOC104215241 [Nicotiana sylvestris]779011244 (4)ref|XP_011088473.1|138PREDICTED: uncharacterized protein LOC105169690 [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF004J04- GGGCAACAACTCAACAATGGG
JMSF023I22- AACAACTCAACAATGGG
                      ____________________________________________________________
consensus GGGCAACAACTCAACAATGGG
 
. : . : . : . : . : . :
JMSF004J04- AACCGTAACGTTATCAGCTTCGCCTTCTTCAGCTCCGTTGATGATATTCCGCCGCCTCCT
JMSF023I22- AACCGTAACGTTATCAGCTTCGCCTTCTTCAGCTCCGTTGATGATATTCCGCCGCCTCCT
                      ____________________________________________________________
consensus AACCGTAACGTTATCAGCTTCGCCTTCTTCAGCTCCGTTGATGATATTCCGCCGCCTCCT
 
. : . : . : . : . : . :
JMSF004J04- CCGGTCCGCCACCCCTCTCCTCTCTTTCTCCCTCCGCCCAAAACAGCCCGTCTACTTTTA
JMSF023I22- CCGGTCCGCCACCCCTCTCCTCTCTTTCTCCCTCCGCCCAAAACAGCCCGTCTACTTTTA
                      ____________________________________________________________
consensus CCGGTCCGCCACCCCTCTCCTCTCTTTCTCCCTCCGCCCAAAACAGCCCGTCTACTTTTA
 
. : . : . : . : . : . :
JMSF004J04- CCCCCAGACGCCGCCGCTTTTCACCCCTGCCCGCCCCCATTTCTTATATCAAACTCACCA
JMSF023I22- CCCCCAGACGCCGCCGCTTTTCACCCCTGCCCGCCCCCATTTCTTATATCAAACTCACCA
                      ____________________________________________________________
consensus CCCCCAGACGCCGCCGCTTTTCACCCCTGCCCGCCCCCATTTCTTATATCAAACTCACCA
 
. : . : . : . : . : . :
JMSF004J04- TCTCTCTTCAAACCACCCACT
JMSF023I22- TCTCTCTTCAAACCACCCACTTCAAGCCCTTGTACAATTTCAAGACGACGTTGTTGAAGG
                      ____________________________________________________________
consensus TCTCTCTTCAAACCACCCACTTCAAGCCCTTGTACAATTTCAAGACGACGTTGTTGAAGG
 
. : . : . : . : . : . :
JMSF023I22- AACTGACGAAGATACCGATGTTGATGAAATTGAGGAACTTGAACCCGAAGCAGTAGCGGT
                      ____________________________________________________________
consensus AACTGACGAAGATACCGATGTTGATGAAATTGAGGAACTTGAACCCGAAGCAGTAGCGGT
 
. : . : . : . : . : . :
JMSF023I22- TACAGTTACCACAGAGTCTTCCGAAGCTCAGAGGCTGCATTCGAAGCTTCAGAGACTCAC
rJMSF023I22+ CATTCGGAGCTTCAGAGACTCAC
                      ____________________________________________________________
consensus TACAGTTACCACAGAGTCTTCCGAAGCTCAGAGGCTGCATTCGGAGCTTCAGAGACTCAC
 
. : . : . : . : . : . :
JMSF023I22- AGTGAAGGAGAAGAAAGAGTTAGGTTCTTATGCGCACAGTTTGGGGAAGAAGCTCAAGTC
rJMSF023I22+ AGTGAAGGAGAAGAAAGAGTTAGGTTCTTATGCGCACAGTTTGGGGAAGAAGCTCAAGTC
                      ____________________________________________________________
consensus AGTGAAGGAGAAGAAAGAGTTAGGTTCTTATGCGCACAGTTTGGGGAAGAAGCTCAAGTC
 
. : . : . : . : . : . :
JMSF023I22- CCAACAGGTCGGCAAGTCTGGAATCACTGATACTGTCATCCTCGCATTGGGTGAAACCCT
rJMSF023I22+ CCAACAGGTCGGCAAGTCTGGAATCACTGATACTGTCATCCTCGCATTGGGTGAAACCCT
                      ____________________________________________________________
consensus CCAACAGGTCGGCAAGTCTGGAATCACTGATACTGTCATCCTCGCATTGGGTGAAACCCT
 
. : . : . : . : . : . :
JMSF023I22- TGAAAAAAATGAGCTTTTGAAGCTTAAAATACATGGCAGCTGCCCGGGAGAGCTAGAGGA
rJMSF023I22+ TGAAAAAAATGAGCTTTTGAAGCTTAAAATACATGGCAGCTGCCCGGGAGAGCTAGAGGA
                      ____________________________________________________________
consensus TGAAAAAAATGAGCTTTTGAAGCTTAAAATACATGGCAGCTGCCCGGGAGAGCTAGAGGA
 
. : . : . : . : . : . :
JMSF023I22- TGTGGTGAGGCAATTGGAAAGAGCCACGGGATCAGTTGTGGTTGGTCAAATTGGTAGAAC
rJMSF023I22+ TGTGGTGAGGCAATTGGAAAGAGCCACGGGATCAGTTGTGGTTGGTCAAATTGGTAGAAC
                      ____________________________________________________________
consensus TGTGGTGAGGCAATTGGAAAGAGCCACGGGATCAGTTGTGGTTGGTCAAATTGGTAGAAC
 
. : . : . : . : . : . :
JMSF023I22- CGTGATTCTTTATCGACCAAGCCTTTCCAAATTGAAAGCTGAAGA
rJMSF023I22+ CGTGATTCTTTATCGACCAAGCCTTTCCAAATTGAAAGCTGAAGAGAAGAAAAAGCTTGT
                      ____________________________________________________________
consensus CGTGATTCTTTATCGACCAAGCCTTTCCAAATTGAAAGCTGAAGAGAAGAAAAAGCTTGT
 
. : . : . : . : . : . :
rJMSF023I22+ TCAAAGAGCTATTTTGAAAAAACAAATGCTGAATAAAGACAAGAAACCAATGCAGGTTAA
                      ____________________________________________________________
consensus TCAAAGAGCTATTTTGAAAAAACAAATGCTGAATAAAGACAAGAAACCAATGCAGGTTAA
 
. : . : . : . : . : . :
rJMSF023I22+ GGGACAGGGTAAGGGACTAATTCCAAGACCATCTAACCGTGGTCGCAGAGGGGGTAGCCG
                      ____________________________________________________________
consensus GGGACAGGGTAAGGGACTAATTCCAAGACCATCTAACCGTGGTCGCAGAGGGGGTAGCCG
 
. : . : . : . : . : . :
rJMSF023I22+ ATTTTCTCTAGATTCAGCCCAAAAATGAATTTTGAACTTTTGATACCTCATCGTTCATCA
rJMSF004J04+ CCCAAAAATGANTTTTGAACTTTTGATACCTCATCGTTCATCA
                      ____________________________________________________________
consensus ATTTTCTCTAGATTCAGCCCAAAAATGAATTTTGAACTTTTGATACCTCATCGTTCATCA
 
. : . : . : . : . : . :
rJMSF023I22+ TAT-GGTTAGATGTCTGTGATGACAAGGTGTGGCCTTGAATGAAATGCTGCAAGAACTAA
rJMSF004J04+ TATGGGTTAGATGTCTGTGATGACAAGGTGTGGCCTTGAATGAAATGCTGCAAGAACTAA
                      ____________________________________________________________
consensus TATGGGTTAGATGTCTGTGATGACAAGGTGTGGCCTTGAATGAAATGCTGCAAGAACTAA
 
. : . : . : . : . : . :
rJMSF023I22+ TATGAGATTGCAGAGGTCCCAATAGCACATTGAACTTTCATCCAAAGAGAATTGCCATTA
rJMSF004J04+ TATGAGATTGCAGAGGTCCCAATAGCACATTGAACTTTCATCCAAAGAGAATTGCCATTA
                      ____________________________________________________________
consensus TATGAGATTGCAGAGGTCCCAATAGCACATTGAACTTTCATCCAAAGAGAATTGCCATTA
 
. : . : . : . : . : . :
rJMSF023I22+ GAGCAGCACGTGTTAGTGTGTTACTTCTTCAACTAATCTGGCAAAGATGGATTAATATGT
rJMSF004J04+ GAGCAGCACGTGTTAGTGTGTTACTTCTTCAACTAATCTGGCAAAGATGGANTAATATGT
                      ____________________________________________________________
consensus GAGCAGCACGTGTTAGTGTGTTACTTCTTCAACTAATCTGGCAAAGATGGATTAATATGT
 
. : . : . : . : . : . :
rJMSF023I22+ TTCCCAGAATTTGCCAATGACAAAGCAGCAGGATTCTTTGGAGAATTTAATGTTTTGACC
rJMSF004J04+ TTCCCAGAATTTGCCAATGACAAAGCAGCAGGATTCTTTGGAGAATTTAATGTTTTGA-C
                      ____________________________________________________________
consensus TTCCCAGAATTTGCCAATGACAAAGCAGCAGGATTCTTTGGAGAATTTAATGTTTTGACC
 
. : . : . : . : . : . :
rJMSF023I22+ CTTGGTTTATGGTATTGTACTTGTTACTGTCGGATGC
rJMSF004J04+ CTTGGTTTATGGTATTGTACTTGTTACTGTCGGATGCTGCGAGGGAAACTCGGAAATGTT
                      ____________________________________________________________
consensus CTTGGTTTATGGTATTGTACTTGTTACTGTCGGATGCTGCGAGGGAAACTCGGAAATGTT