clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF001P24 | Sequence | 328 | 001913 (3) | ref|XP_011076767.1| | 8e-36 | PREDICTED: protein DA1-related 2 isoform X2 [Sesamum indicum] | 688 | 011231 (3) | ref|XP_009615651.1| | 2e-77 | PREDICTED: protein DA1-related 2-like isoform X2 [Nicotiana tomentosiformis] |
JMSF006G17 | Sequence | 409 | 011231 (3) | ref|XP_009587496.1| | 7e-49 | PREDICTED: protein DA1-related 2-like isoform X2 [Nicotiana tomentosiformis] | |||||
JMSF030E01 | Sequence | 626 | 011231 (3) | ref|XP_009615651.1| | 1e-98 | PREDICTED: protein DA1-related 2-like isoform X2 [Nicotiana tomentosiformis] | 743 | 012437 (14) | ref|XP_009614370.1| | 2e-68 | PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Nicotiana tomentosifo |
This contig is upended
. : . : . : . : . : . :
JMSF030E01+ GAGAAACATGGGTTCCACCACATG
____________________________________________________________
consensus GAGAAACATGGGTTCCACCACATG
. : . : . : . : . : . :
JMSF030E01+ CCTGAAACCAGAGGCCTATGCCTGTCTGAGGAGCAGACAGTTAGCAGTATACAGAGAAGA
rJMSF001P24+ GCAGACAGTTAGCAGTATACAGAGAAGA
____________________________________________________________
consensus CCTGAAACCAGAGGCCTATGCCTGTCTGAGGAGCAGACAGTTAGCAGTATACAGAGAAGA
. : . : . : . : . : . :
JMSF030E01+ CCAAGAATGGGTGGCCGTGGATTTGTAGGAATGCGTACACAGCCTCAGAGACTACCTCGA
rJMSF001P24+ CCAAGAATGGGTGGCCGTGGATTTGTAGGAATGCGTACACAGCCTCAGAGACTACCTCGA
____________________________________________________________
consensus CCAAGAATGGGTGGCCGTGGATTTGTAGGAATGCGTACACAGCCTCAGAGACTACCTCGA
. : . : . : . : . : . :
JMSF030E01+ AGATGTGAAGTTACAGCGATCTTAGTCTTATACGGTCTCCCAAGATTACTGACTGGCGCC
rJMSF001P24+ AGATGTGAAGTTACAGCGATCTTAGTCTTATACGGTCTCCCAAGATTACTGACTGGCGCC
____________________________________________________________
consensus AGATGTGAAGTTACAGCGATCTTAGTCTTATACGGTCTCCCAAGATTACTGACTGGCGCC
. : . : . : . : . : . :
JMSF030E01+ ATTCTTGCACACGAATTAATGCATGCCTGGTTACGTCTGAAAGGATATCGCAATCTCAAC
JMSF006G17+ AATTAATGCATGCCTGGTTACGTCTGAAAGGATATCGCAATCTCAAC
rJMSF001P24+ ATTNTTGCACNCGAATTAATGCATGCCTGGTTACGTNTGAAAGGATATCGCAATCTCAAC
____________________________________________________________
consensus ATTCTTGCACACGAATTAATGCATGCCTGGTTACGTCTGAAAGGATATCGCAATCTCAAC
. : . : . : . : . : . :
JMSF030E01+ CCTCAAGTGGAAGAAGGGATTTGCCAGGTGCTTTCCCACATGTGGCTCGAGTCGGAGGTG
JMSF006G17+ CCTCAAGTGGAAGAAGGGATTTGCCAGGTGCTTTCCCACATGTGGCTCGAGTCGGAGGTG
rJMSF001P24+ CCTCAAGTGGAAGAAGGGATTTGCCAGGTGCTTTCCCACATGTGGCTCGAGTCGGAGGTG
____________________________________________________________
consensus CCTCAAGTGGAAGAAGGGATTTGCCAGGTGCTTTCCCACATGTGGCTCGAGTCGGAGGTG
. : . : . : . : . : . :
JMSF030E01+ ATGCCAACCAGATACAGAAATATGCCATCGACATCAACAGCTTCATCATCATCCTCATCG
JMSF006G17+ ATGCCAACCAGATACAGAAATATGCCATCGACATCAACAGCTTCATCATCATCCTCATCG
rJMSF001P24+ ATGCCAACCAGATACAGAAATATGCCATCGACATCAACAGCTTCATCATCATCCTCATCG
____________________________________________________________
consensus ATGCCAACCAGATACAGAAATATGCCATCGACATCAACAGCTTCATCATCATCCTCATCG
. : . : . : . : . : . :
JMSF030E01+ TCTTCTTCCAAGAAAGGTGGAAGGTCTGGCACGGAGAACAAGCTGGGCGAGTTTTTCAAG
JMSF006G17+ TCTTCTTCCAAGAAAGGTGGAAGGTCTGGCACGGAGAACAAGCTGGGCGAGTTTTTCAAG
rJMSF001P24+ TCTTCTTCCAAGAAAGGTGGAAGGTNTGGCACGGAGAACAAGCTGGGCGAGTTTTTCAAG
____________________________________________________________
consensus TCTTCTTCCAAGAAAGGTGGAAGGTCTGGCACGGAGAACAAGCTGGGCGAGTTTTTCAAG
. : . : . : . : . : . :
JMSF030E01+ CATCAGATATTAAACGACGCTTCCCCCGCCTATGGAGAAGGCTTCAGAGCAGCTCATGTA
JMSF006G17+ CATCAGATATTAAACGACGCTTCCCCCGCCTATGGAGAAGGCTTCAGAGCAGCTCATGTA
rJMSF001P24+ CATCAGATATTAAACGACGCTTCCCCCGCCTATGGAGAAGGCTTCAGAGCAGCTCATGTA
____________________________________________________________
consensus CATCAGATATTAAACGACGCTTCCCCCGCCTATGGAGAAGGCTTCAGAGCAGCTCATGTA
. : . : . : . : . : . :
JMSF030E01+ GCCGTGAACAAATATGGATTAAGAAGTACCTTGGAACACATTCGTCTTACCGGCACTTTT
JMSF006G17+ GCCGTGAACAAATATGGATTAAGAAGTACCTTGGAACACATTCGTCTTACCGGCACTTTT
rJMSF001P24+ GCCGTGAACAAATATGGATTAAGAAGTACCTTGGAACACATTNGTNTTACCGGCACTTTT
____________________________________________________________
consensus GCCGTGAACAAATATGGATTAAGAAGTACCTTGGAACACATTCGTCTTACCGGCACTTTT
. : . : . : . : . : . :
JMSF030E01+ CCCATATAAATCTGCCTTTTTCCCCATCATCTGCTCTTCTTTGGGCATGTCAGAGATC
JMSF006G17+ CCCATATAAATCTGCCTTTTTCCCCATCATCTGCTCTTCTTTGGGCATGTCAGAGATC
rJMSF001P24+ CCCATATAAATNTGCCTTTTTCCCCATCATNTGCTNTTCTTTGGGCATGTCAGAGATCAT
____________________________________________________________
consensus CCCATATAAATCTGCCTTTTTCCCCATCATCTGCTCTTCTTTGGGCATGTCAGAGATCAT
. : . : . : . : . : . :
rJMSF001P24+ GGAATACCCTTCATTATTTTTTGTCTGGGGATTCAAGAAAACNGATGCAGAAGTATGCAG
____________________________________________________________
consensus GGAATACCCTTCATTATTTTTTGTCTGGGGATTCAAGAAAACNGATGCAGAAGTATGCAG
. : . : . : . : . : . :
rJMSF001P24+ AAACTGCAGAATCCTTTAAAAAAAAAGAACTTTTTTTTTTCGACGTAGATGATGATGTTG
____________________________________________________________
consensus AAACTGCAGAATCCTTTAAAAAAAAAGAACTTTTTTTTTTCGACGTAGATGATGATGTTG