| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017I09 | Sequence | 556 | 006705 (6) | ref|XP_004250657.1| | 5e-97 | PREDICTED: eukaryotic initiation factor 4A-3 [Solanum lycopersicum] | 811 | 011226 (3) | ref|XP_009616974.1| | 4e-118 | PREDICTED: eukaryotic initiation factor 4A-3 [Nicotiana tomentosiformis] |
| JMFF025L23 | Sequence | 627 | 006705 (6) | ref|XP_006366335.1| | 4e-91 | PREDICTED: eukaryotic initiation factor 4A-3-like [Solanum tuberosum] | 813 | 011226 (3) | sp|P41380.1|IF4A3_NICPL | 4e-116 | RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3; AltName: Full= |
| JMFF051G16 | Sequence | 619 | 006705 (6) | ref|XP_006366335.1| | 8e-102 | PREDICTED: eukaryotic initiation factor 4A-3-like [Solanum tuberosum] | 554 | 011226 (3) | dbj|BAD94818.1| | 5e-48 | RNA helicase [Arabidopsis thaliana] |
This contig is upended
. : . : . : . : . : . :
rJMFF017I09+ TAGTAAAACGTGATGAGTTGACCCTAGAGGGCATCAAACAGTTCTTTG
rJMFF025L23+ CNTAGTAAANCGTGATGAGTTGACCCTAGAGGGCATCAANCAGTTCTTTG
____________________________________________________________
consensus CNTAGTAAAACGTGATGAGTTGACCCTAGAGGGCATCAAACAGTTCTTTG
. : . : . : . : . : . :
rJMFF017I09+ TTGCTGTGGAGAAAGAGGAGTGGAAATTCGACACACTTTGTGATCTTTATGATACCCTGA
rJMFF025L23+ TTGCTGTGGAGAAAGAGGAGTGGAAATTCGACACACTTTGTGATCTTTATGATACCCTGA
____________________________________________________________
consensus TTGCTGTGGAGAAAGAGGAGTGGAAATTCGACACACTTTGTGATCTTTATGATACCCTGA
. : . : . : . : . : . :
rJMFF017I09+ CCATCACCCAAGCTGTTATTTTTTGCAATACAAAGCGGAAGGTGGACTGGTTGACTAGCA
rJMFF025L23+ CCATCACCCAAGCTGTTATTTTTTGCAATACAAAGCGGAAGGTGGACTGGTTGACTAGCA
____________________________________________________________
consensus CCATCACCCAAGCTGTTATTTTTTGCAATACAAAGCGGAAGGTGGACTGGTTGACTAGCA
. : . : . : . : . : . :
rJMFF017I09+ AGATGCGTGAAAATAACTTCACAGTCTCATCCATGCACGGGGATATGCCACAAAAGGAGC
rJMFF025L23+ AGATGCGTGAAAATAACTTCACAGTCTCATCCATGCACGGGGATATGCCACAAAAGGAGC
____________________________________________________________
consensus AGATGCGTGAAAATAACTTCACAGTCTCATCCATGCACGGGGATATGCCACAAAAGGAGC
. : . : . : . : . : . :
rJMFF017I09+ GAGATGCTATAATGGGAGAGTTCCGGTCTGGCACAACTCGTGTCCTCATTACAACAGATG
rJMFF025L23+ GAGATGCTATAATGGGAGAGTTCCGGTCTGGCACAACTCGTGTCCTCATTACAACAGATG
rJMFF051G16+ CATTACAACAGATG
____________________________________________________________
consensus GAGATGCTATAATGGGAGAGTTCCGGTCTGGCACAACTCGTGTCCTCATTACAACAGATG
. : . : . : . : . : . :
rJMFF017I09+ TTTGGGCTAGAGGGCTGGATGTTCAACAGGTTTCCCTGGTTATTAACTATGACCTTCCAA
rJMFF025L23+ TTTGGGCTAGAGGGCTGGATGTTCAACAGGTTTCCCTGGTTATTAACTATGACCTTCCAA
rJMFF051G16+ TTTGGGCTAGAGGGCTGGATGTTCAACAGGTTTCCCTGGTTATTAACTATGACCTTCCAA
____________________________________________________________
consensus TTTGGGCTAGAGGGCTGGATGTTCAACAGGTTTCCCTGGTTATTAACTATGACCTTCCAA
. : . : . : . : . : . :
rJMFF017I09+ ACAATCGAGAACTCTACATTCATCGCATTGGTCGTTCTGGTCGTTTTGGGCGGAAGGGTG
rJMFF025L23+ ACAATCGAGAACTCTACATTCATCGCATTGGTCGTTCTGGTCGTTTTGGGCGGAAGGGTG
rJMFF051G16+ ACAATCGAGAACTCTACATTCATCGCATTGGTCGTTCTGGTCGTTTTGGGCGGAAGGGTG
____________________________________________________________
consensus ACAATCGAGAACTCTACATTCATCGCATTGGTCGTTCTGGTCGTTTTGGGCGGAAGGGTG
. : . : . : . : . : . :
rJMFF017I09+ TTGCGATAAATTTTGTTAAAAGTGATGATATCAAAATTCTGAGGGACATAGAGCAATACT
rJMFF025L23+ TTGCGATAAATTTTGTTAAAAGTGATGATATCAAAATTCTGAGGGACATAGAGCAATACT
rJMFF051G16+ TTGCGATAAATTTTGTTAAAAGTGATGATATCAAAATTCTGAGGGACATAGAGCAATACT
____________________________________________________________
consensus TTGCGATAAATTTTGTTAAAAGTGATGATATCAAAATTCTGAGGGACATAGAGCAATACT
. : . : . : . : . : . :
rJMFF017I09+ ATAGTACCCAGATTGATGAAATGCCAATGAATGTTGCGGATTTGTTATGATGGGCCTTTG
rJMFF025L23+ ATAGTACCCAGATTGATGAAATGCCAATGAATGTTGCGGATTTGATATGATGGGCCTTTG
rJMFF051G16+ ATAGTACCCAGATTGATGAAATGCCAATGAATGTTGCGGATTTGATATGATGGGCCTTTG
____________________________________________________________
consensus ATAGTACCCAGATTGATGAAATGCCAATGAATGTTGCGGATTTGATATGATGGGCCTTTG
. : . : . : . : . : . :
rJMFF017I09+ CCAAGGGACGATCTTCTACTTCTACTCTGCAAAGCAATGGTGTCAACATTTTGCAATGGG
rJMFF025L23+ CCAAGGGACGATCTTCTACTTCTACTCTGCAAAGCAATGGTGTCAACATTTTGCAATGGG
rJMFF051G16+ CCAAGGGACGATCTTCTACTTCTACTCTGCAAAGCAATGGTGTCAACATTTTGCAATGGG
____________________________________________________________
consensus CCAAGGGACGATCTTCTACTTCTACTCTGCAAAGCAATGGTGTCAACATTTTGCAATGGG
. : . : . : . : . : . :
rJMFF017I09+ CTTGACTTGTGTGATGGGTTTGTACTACGGGTGCATTGTCCTTGTCAAGTTTTAAAACCA
rJMFF025L23+ CTTGACTTGTGTGATGGGTTTGTACTACGGGTGCATTGTCCTTGTCAAGTTTTAAAACCA
rJMFF051G16+ CTTGACTTGTGTGATGGGTTTGTACTACGGGTGCATTGTCCTTGTCAAGTTTTAAAACCA
____________________________________________________________
consensus CTTGACTTGTGTGATGGGTTTGTACTACGGGTGCATTGTCCTTGTCAAGTTTTAAAACCA
. : . : . : . : . : . :
rJMFF017I09+ CTTTGTAATCAGATTTGCCTGTCTGGAATGGATTGGTTTGGGATCTGGATTTTGACACTA
rJMFF025L23+ CTTTGTAATCAGATTTGCCTGTCTGGAATGGATTGGTTTGGGATCTGGATTTTGACACTA
rJMFF051G16+ CTTTGTAATCAGATTTGCCTGTCTGGAATGGATTGGTTTGGGATCTGGATTTTGACACTA
____________________________________________________________
consensus CTTTGTAATCAGATTTGCCTGTCTGGAATGGATTGGTTTGGGATCTGGATTTTGACACTA
. : . : . : . : . : . :
rJMFF017I09+ TAATTTCAGTAATTGTGTGTATACTAATTGTGATCACCTTTTAGCATTAGGATTGATTAT
rJMFF025L23+ TAATTTCAGTAATTGTGTGTATACTAATTGTGATCACCTTTTAGCATTAGGATTGATTAT
rJMFF051G16+ TAATTTCAGTAATTGTGTGTATACTAATTGTGATCACCTTTTAGCATTAGGATTGATTAT
____________________________________________________________
consensus TAATTTCAGTAATTGTGTGTATACTAATTGTGATCACCTTTTAGCATTAGGATTGATTAT
. : . : . : . : . : . :
rJMFF017I09+ CATGAGTATGTTCAGACGTTTATAACTTATTTT
rJMFF025L23+ CATGAGTATGTTCAGACGTTTATAACTTATTTT
rJMFF051G16+ CATGAGTATGTTCAGACGTTTATAACTTATTTTTATGAACAAACGCTTGTGCTTCTCCCT
____________________________________________________________
consensus CATGAGTATGTTCAGACGTTTATAACTTATTTTTATGAACAAACGCTTGTGCTTCTCCCT