Contig 011212:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001E05Sequence560007269 (7)ref|XP_009625296.1|7e-18PREDICTED: scarecrow-like protein 13 [Nicotiana tomentosiformis]714011212 (3)ref|XP_010312439.1|1e-106PREDICTED: GRAS1 protein isoform X1 [Solanum lycopersicum]
JMFF031N14Sequence590007269 (7)ref|XP_009625296.1|1e-24PREDICTED: scarecrow-like protein 13 [Nicotiana tomentosiformis]696011212 (3)ref|XP_010312439.1|4e-96PREDICTED: GRAS1 protein isoform X1 [Solanum lycopersicum]
JMFF049I02Sequence617007269 (7)ref|XP_009625296.1|9e-28PREDICTED: scarecrow-like protein 13 [Nicotiana tomentosiformis]713011212 (3)ref|XP_006365847.1|5e-37PREDICTED: scarecrow-like protein 13-like isoform X1 [Solanum tuberosum] ref|XP

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF001E05+ ACCCGG
                      ____________________________________________________________
consensus ACCCGG
 
. : . : . : . : . : . :
rJMFF001E05+ GGAAGCACTCGCGGTTAACTTCCCTTACATGTTACATCACATGCCCGACGAGAGTGTGAG
rJMFF031N14+ GTTACATCACATGCCCGACGAGAGTGTGAG
                      ____________________________________________________________
consensus GGAAGCACTCGCGGTTAACTTCCCTTACATGTTACATCACATGCCCGACGAGAGTGTGAG
 
. : . : . : . : . : . :
rJMFF001E05+ CACCATGAATCACCGAGACCGGTTATTGAGACTAGTAAAGAGTCTTTCCCCCAAAATTGT
rJMFF031N14+ CACCATGAATCACCGAGACCGGTTATTGAGACTAGTAAAGAGTCTTTCCCCCAAAATTGT
                      ____________________________________________________________
consensus CACCATGAATCACCGAGACCGGTTATTGAGACTAGTAAAGAGTCTTTCCCCCAAAATTGT
 
. : . : . : . : . : . :
rJMFF001E05+ CACCGTTATCGAGCAAGAATCCAACACCAACACCACTCCTTTCCTTCCGAGGTTCCGCGA
rJMFF031N14+ CACCGTTATCGAGCAAGAATCCAACACCAACACCACTCCTTTCCTTCCGAGGTTCCGCGA
                      ____________________________________________________________
consensus CACCGTTATCGAGCAAGAATCCAACACCAACACCACTCCTTTCCTTCCGAGGTTCCGCGA
 
. : . : . : . : . : . :
rJMFF001E05+ AACCTTAGACTACTACACAGCAATGTTCGAGTCAATAGACGCAGCTCGCCCGAGAGACGA
rJMFF031N14+ AACCTTAGACTACTACACAGCAATGTTCGAGTCAATAGACGCAGCTCGCCCGAGAGACGA
                      ____________________________________________________________
consensus AACCTTAGACTACTACACAGCAATGTTCGAGTCAATAGACGCAGCTCGCCCGAGAGACGA
 
. : . : . : . : . : . :
rJMFF001E05+ CAGACAGCGCATCAGTGCAGAGGAGCATTGCGTTGCCCGGGATATCGTCAACATAATAGC
rJMFF031N14+ CAGACAGCGCATCAGTGCAGAGGAGCATTGCGTTGCCCGGGATATCGTCAACATAATAGC
rJMFF049I02+ GGGATATCGTCAACATAATAGC
                      ____________________________________________________________
consensus CAGACAGCGCATCAGTGCAGAGGAGCATTGCGTTGCCCGGGATATCGTCAACATAATAGC
 
. : . : . : . : . : . :
rJMFF001E05+ ATGCGAGGGGGCTGATCGAGTGGAAAGACACGAACCGTTTGGCAAGTGGAGTATGAGATT
rJMFF031N14+ ATTCGAGGGGGCTGATCGAGTGGAAAGACACGAACCGTTTGGCAAGTGGAGTATGAGATT
rJMFF049I02+ ATTTGGGGGGGGTGATCGAGTGGAAAGACCCGAACCGTTTGGCAAGTGGAGTATGAGATT
                      ____________________________________________________________
consensus ATTCGAGGGGGCTGATCGAGTGGAAAGACACGAACCGTTTGGCAAGTGGAGTATGAGATT
 
. : . : . : . : . : . :
rJMFF001E05+ TACGATGGCTGGATTCACTCCGTGCCCGTTAAGTCCCTCAGTGGGCGAGGCCATGAGGCA
rJMFF031N14+ TACGATGGCTGGATTCACTCCGTGCCCGTTAAGTCCCTCAGTGGGCGAGGCCATGAGGCA
rJMFF049I02+ TTCGATGGGGGGATTCACTCCGTGCCCGTTAAGTCCCTCAGTGGGGGAGGCCATGAGGCC
                      ____________________________________________________________
consensus TACGATGGCTGGATTCACTCCGTGCCCGTTAAGTCCCTCAGTGGGCGAGGCCATGAGGCA
 
. : . : . : . : . : . :
rJMFF001E05+ CATGTTGCAGGAATATAGCCCGAATTTCGGGATTGCACAAGGCCATGGCGCATTGTATCT
rJMFF031N14+ CATGTTGCAGGAATATAGCCCGAATTTCGGGATTGCACAAGGCCATGGCGCATTGTATCT
rJMFF049I02+ CATGTTGCAGGAATATAGCCCGAATTTTGGGATTGCACAAGGCCATGGCGCATTGTATTT
                      ____________________________________________________________
consensus CATGTTGCAGGAATATAGCCCGAATTTCGGGATTGCACAAGGCCATGGCGCATTGTATCT
 
. : . : . : . : . : . :
rJMFF001E05+ TGGATGGAAGAACCGCGCTTTGGCATCTTCCTCAGCCTGGAGATGATACACTCCCCCGAC
rJMFF031N14+ TGGATGGAAGAACCGCGCTTTGGCATCTTCCTCAGCCTGGAGATGATACACTCCCCCGAC
rJMFF049I02+ TGGATGGAAGAACCGCGCTTTGGCATTTTCCTCAGGCTGGAGATGATACACTCCCCCGAC
                      ____________________________________________________________
consensus TGGATGGAAGAACCGCGCTTTGGCATCTTCCTCAGCCTGGAGATGATACACTCCCCCGAC
 
. : . : . : . : . : . :
rJMFF001E05+ GCTTTTCAACTCTCTGTAAATTTTGCATACCCGACCGATCTTTAACCTTTTCGCCTTTGC
rJMFF031N14+ GCTTTTCAACTCTCTGTAAATTTTGCATACCCGACCGATCTTTAACCTTTTCGCCTTTGC
rJMFF049I02+ GGTTTTCAACTTTTTGTAAATTTTGCATACCCGGCCGATTTTTAACCTTTTCGCCTTTGC
                      ____________________________________________________________
consensus GCTTTTCAACTCTCTGTAAATTTTGCATACCCGACCGATCTTTAACCTTTTCGCCTTTGC
 
. : . : . : . : . : . :
rJMFF001E05+ CTTGGTATGATTAGAACAGAGTTCTTCTCTGAACTATTAGGCTTCATATAGAATGTGCAC
rJMFF031N14+ CTTGGTATGATTAGAACAGAGTTCTTCTCTGAACTATTAGGCTTCATATAGAATGTGCAC
rJMFF049I02+ CTTGGTATGATTAGAACAGAGTTTTTTTTTGAACTATTAGGCTTCATATAGAAAGGGCCC
                      ____________________________________________________________
consensus CTTGGTATGATTAGAACAGAGTTCTTCTCTGAACTATTAGGCTTCATATAGAATGTGCAC
 
. : . : . : . : . : . :
rJMFF001E05+ TTTGCTAATGTGTTCTTGTCTGTCAATACCTCAGAACAATCTTAACA
rJMFF031N14+ TTTGCTAATGTGTTCTTGTCTGTCAATACCTCAGAACAATCTTAACATGATTACCAGATA
rJMFF049I02+ TTTGCTAAAGTGTTTTTGTTTGTCAATACCTCAGAACAATTTTAACACGCTTACCAGATA
                      ____________________________________________________________
consensus TTTGCTAATGTGTTCTTGTCTGTCAATACCTCAGAACAATCTTAACATGCTTACCAGATA
 
. : . : . : . : . : . :
rJMFF031N14+ CAATTA
rJMFF049I02+ CAATTATGTTCCAGTTTTTTACTCTCTTGTTGAGGTTACATAAACTGAATTTTTGTGGGG
                      ____________________________________________________________
consensus CAATTATGTTCCAGTTTTTTACTCTCTTGTTGAGGTTACATAAACTGAATTTTTGTGGGG
 
. : . : . : . : . : . :
rJMFF049I02+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTCAGGGTTGGAT
                      ____________________________________________________________
consensus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTCAGGGTTGGAT