| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF049B10 | Sequence | 637 | 011210 (6) | ref|XP_006419270.1| | 1e-76 | hypothetical protein CICLE_v10005764mg [Citrus clementina] ref|XP_006488758.1| P | 644 | 011210 (6) | ref|XP_007223746.1| | 5e-31 | hypothetical protein PRUPE_ppa010512mg [Prunus persica] ref|XP_008223460.1| PRED |
| JMSF013J20 | Sequence | 396 | 011210 (6) | ref|XP_006488759.1| | 4e-24 | PREDICTED: methyltransferase-like protein 13-like isoform X3 [Citrus sinensis] | 685 | 011210 (6) | ref|XP_004973949.1| | 9e-09 | PREDICTED: methyltransferase-like protein 13-like [Setaria italica] |
| JMSF015H18 | Sequence | 466 | 011210 (6) | ref|XP_006488759.1| | 5e-33 | PREDICTED: methyltransferase-like protein 13-like isoform X3 [Citrus sinensis] | 768 | 011210 (6) | ref|XP_004973949.1| | 1e-08 | PREDICTED: methyltransferase-like protein 13-like [Setaria italica] |
This contig is upended
. : . : . : . : . : . :
JMSF013J20- GAG
JMSF015H18- GAG
____________________________________________________________
consensus GAG
. : . : . : . : . : . :
JMSF013J20- TGTCTAGTCTGGTAATAAACAGAACAGAAGAGATCGCCATTGTTGAGTGAGAGAGAGAGA
JMSF015H18- TGTCTAGTCTGGTAATAAACAGAACAGAAGAGATCGCCATTGTTGAGTGAGAGAGAGAGA
JMFF049B10- GTTGTGTGAGAGAGAGAGA
____________________________________________________________
consensus TGTCTAGTCTGGTAATAAACAGAACAGAAGAGATCGCCATTGTTGAGTGAGAGAGAGAGA
. : . : . : . : . : . :
JMSF013J20- GCTCCATACTTAAGAGTTACTGGAGTGTTACAGAGAGAGAGAGAGAGAGAGAGAGAATTG
JMSF015H18- GCTCCATACTTAAGAGTTACTGGAGTGTTAC--AGAGAGAGAGAGAGAGAGAGAGAATTG
JMFF049B10- GCTCCATACTTAAGAGTTACTGGAGTGTTAC--AGAGAGAGAGAGAGAGAGAGAGAATTG
____________________________________________________________
consensus GCTCCATACTTAAGAGTTACTGGAGTGTTAC--AGAGAGAGAGAGAGAGAGAGAGAATTG
. : . : . : . : . : . :
JMSF013J20- AGAAGGAGAAATGACACTAGGGGGAGGTGGAACAACGCANGTGGCGTACGGAGACAAATG
JMSF015H18- AGAAGGAGAAATGACACTAGGGGGAGGTGGAACAACGCAGGTGGCGTACGGAGACAAATG
JMFF049B10- AGAAGGAGAAATGACACTAGGGGGAGGTGGAACAACGCAGGTGGCGTACGGAGACAAATG
____________________________________________________________
consensus AGAAGGAGAAATGACACTAGGGGGAGGTGGAACAACGCAGGTGGCGTACGGAGACAAATG
. : . : . : . : . : . :
JMSF013J20- GTATTGGGAGAAGCGATACGCACAAGAACCGGTTCCCTACGATTGGTACCAAACCTATCA
JMSF015H18- GTATTGGGAGAAGCGATACGCACAAGAACCGGTTCCCTACGATTGGTACCAAACCTATCA
JMFF049B10- GTATTGGGAGAAGCGATACGCACAAGAACCGGTTCCCTACGATTGGTACCAAACCTATCA
____________________________________________________________
consensus GTATTGGGAGAAGCGATACGCACAAGAACCGGTTCCCTACGATTGGTACCAAACCTATCA
. : . : . : . : . : . :
JMSF013J20- CTCCCTCGCCCCCCTCCTCCGCCTCTACGTTCATCCCCACCACCGCGTCCTCGTCGTCGG
JMSF015H18- CTCCCTCGCCCCCCTCCTCCGCCTCTACGTTCATCCCCACCACCGCGTCCTCGTCGTCGG
JMFF049B10- CTCCCTCGCCCCCCTCCTCCGCCTCTACGTTCATCCCCACCACCGCGTCCTCGTCGTCGG
____________________________________________________________
consensus CTCCCTCGCCCCCCTCCTCCGCCTCTACGTTCATCCCCACCACCGCGTCCTCGTCGTCGG
. : . : . : . : . : . :
JMSF013J20- TTGCGGCAATTCCGCTTTTAGTGAGGGCATGATTGATGACGGTTATGCGGATGTANTCAA
JMSF015H18- TTGCGGCAATTCCGCTTTTAGTGAGGGCATGATTGATGACGGTTATGCGGATGTANTCAA
JMFF049B10- TTGCGGCAATTCCGCTTTTAGTGAGGGCATGATTGATGACGGTTATGCGGATGTAGTCAA
____________________________________________________________
consensus TTGCGGCAATTCCGCTTTTAGTGAGGGCATGATTGATGACGGTTATGCGGATGTAGTCAA
. : . : . : . : . : . :
JMSF013J20- TGTTGATAGTTCCTCCGTGGTAATTGAAGCA
JMSF015H18- TGTTGATAGTTCCTCCGTGGTAATTGAAGCAATGCGGAAGAAATATTCCAATCGTCCACA
JMFF049B10- TGTTGATAGTTCCTCCGTGGTAATTGAAGCAATGCGGAAGAAATATTCCAATCGTCCACA
____________________________________________________________
consensus TGTTGATAGTTCCTCCGTGGTAATTGAAGCAATGCGGAAGAAATATTCCAATCGTCCACA
. : . : . : . : . : . :
JMSF015H18- ACTGAAAT
JMFF049B10- ACTGAAATATATGAACATGGATGTTAGAGACATGAGTGCCTTTGAAGCCGGTTCCTTTGA
____________________________________________________________
consensus ACTGAAATATATGAACATGGATGTTAGAGACATGAGTGCCTTTGAAGCCGGTTCCTTTGA
. : . : . : . : . : . :
JMFF049B10- TGCCATTATTGATAAAGGAACTTTGGACTCCATCTTGTGTGGGAACGGTTCGACGATAAA
____________________________________________________________
consensus TGCCATTATTGATAAAGGAACTTTGGACTCCATCTTGTGTGGGAACGGTTCGACGATAAA
. : . : . : . : . : . :
JMFF049B10- TGCTGCTCAGATGCTTGCTGAAGTCTGCAGGGTCCTGAAGGATGAAGGAAAATATGTCCT
____________________________________________________________
consensus TGCTGCTCAGATGCTTGCTGAAGTCTGCAGGGTCCTGAAGGATGAAGGAAAATATGTCCT
. : . : . : . : . : . :
JMFF049B10- GATTACTTATGGAGCTCCAGTTCAGCGACTACCTTTGTTGAGAAACTCATGCTCATTGAC
rJMSF015H18+ GATTACTTATGGAGCTCCAGTTCAGCGACTACCTTTGTTGAGAAACTCATGCTCATTGAC
____________________________________________________________
consensus GATTACTTATGGAGCTCCAGTTCAGCGACTACCTTTGTTGAGAAACTCATGCTCATTGAC
. : . : . : . : . : . :
JMFF049B10- NATTAAATTACATGTCAT
rJMSF013J20+ AAATTACATGTCATAGGTATTTTCAATCGTCCTATTNGTCTTCGTTGTCTTTTCTT
rJMSF015H18+ AATTAAATTACATGTCATAGGTATTTTCAATCGTCCTATTTGTCTTCGTTGTCTTTTCTT
____________________________________________________________
consensus AATTAAATTACATGTCATAGGTATTTTCAATCGTCCTATTTGTCTTCGTTGTCTTTTCTT
. : . : . : . : . : . :
rJMSF013J20+ GAACTGAAAATTATTTTTCGACTCGACTCCCCTCGCCCAACTAAGTGAACAACAACAATC
rJMSF015H18+ GAACTGAAAATTATTTTTCGACTCGACTCCCCTCGCCCAACTAAGTGAACAACAACAATC
____________________________________________________________
consensus GAACTGAAAATTATTTTTCGACTCGACTCCCCTCGCCCAACTAAGTGAACAACAACAATC
. : . : . : . : . : . :
rJMSF013J20+ TGTTTGAATATGATTAATAGATATCTTAGTCACGAAACTGTGAAGTACTAGATGTTTTGT
rJMSF015H18+ TGTTTGAATATGATTAATAGATATCTTAGTCACGAAACTGTGAAGTACTAGATGTTTTGT
____________________________________________________________
consensus TGTTTGAATATGATTAATAGATATCTTAGTCACGAAACTGTGAAGTACTAGATGTTTTGT
. : . : . : . : . : . :
rJMSF013J20+ TGTTCTTCATGTTCTGTTAACATAGGCTGCTCGCAAAGATTCCCTCGTAACTGCAGTTTG
rJMSF015H18+ TGTTCTTCATGTTCTGTTAACATAGGCTGCTCGCAAAGATTCCCTCGTAACTGCAGTTTG
____________________________________________________________
consensus TGTTCTTCATGTTCTGTTAACATAGGCTGCTCGCAAAGATTCCCTCGTAACTGCAGTTTG
. : . : . : . : . : . :
rJMSF013J20+ ATAATTGACTTTATCCTTGTGTCTTGCTCGTATCGGTGCAGACAAAGTTCCTACAGGGAG
rJMSF015H18+ ATAATTGACTTTATCCTTGTGTCTTGCTCGTATCGGTGCAGACAAAGTTCCTACAGGGAG
rJMFF049B10+ AGACAAAGTTCCTACAGGGAG
____________________________________________________________
consensus ATAATTGACTTTATCCTTGTGTCTTGCTCGTATCGGTGCAGACAAAGTTCCTACAGGGAG
. : . : . : . : . : . :
rJMSF013J20+ CTCGCACCAGCAAAAATGGGAACTGACTTCACCCATTGCATTGGATAAAGATGTGAGCTC
rJMSF015H18+ CTCGCACCAGCAAAAATGGGAACTGACTTCACCCATTGCATTGGATAAAGATGTGAGCTC
rJMFF049B10+ CTCGCACCAGCAAAAATGGGAACTGACTTCACCCATTGCATTGGATAAAGATGTGAGCTC
____________________________________________________________
consensus CTCGCACCAGCAAAAATGGGAACTGACTTCACCCATTGCATTGGATAAAGATGTGAGCTC
. : . : . : . : . : . :
rJMSF013J20+ CGTGGAATCGGTTTTGGGGCCGAATCCAAGCGTTCACTATATATACGTTTGTGTTAAGGA
rJMSF015H18+ CGTGGAATCGGTTTTGGGGCCGAATCCAAGCGTTCACTATATATACGTTTGTGTTAAGGA
rJMFF049B10+ CGTGGAATCGGTTTTGGGGCCGAATCCAAGCGTTCACTATATATACGTTTGTGTTAAGGA
____________________________________________________________
consensus CGTGGAATCGGTTTTGGGGCCGAATCCAAGCGTTCACTATATATACGTTTGTGTTAAGGA
. : . : . : . : . : . :
rJMSF013J20+ TAATACTTTGGAGTCCAGGCACAAAGCACAGATCAAGAATTGAAGGATGAAGCTGGTCTC
rJMSF015H18+ TAATACTTTGGAGTCCAGGCACAAAGCACAGATCAAGAATTGAAGGATGAAGCTGGTCTC
rJMFF049B10+ TAATACTTTGGAGTCCAGGCACAAAGCACAGATCAAGAATTGAAGGATGAAGCTGGTCTC
____________________________________________________________
consensus TAATACTTTGGAGTCCAGGCACAAAGCACAGATCAAGAATTGAAGGATGAAGCTGGTCTC
. : . : . : . : . : . :
rJMSF013J20+ CTTTTGCCCTTAAGTGGAAGGCCAATCACTCACTATATATACTGATACGGATTCCTTTGT
rJMSF015H18+ CTTTTGCCCTTAAGTGGAAGGCCAATCACTCACTATATATACTGATACGGATTCCTTTGT
rJMFF049B10+ CTTTTGCCCTTAAGTGGAAGGCCAATCACTCACTATATATACTGATACGGATTCCTTTGT
____________________________________________________________
consensus CTTTTGCCCTTAAGTGGAAGGCCAATCACTCACTATATATACTGATACGGATTCCTTTGT
. : . : . : . : . : . :
rJMSF013J20+ TGCCCTCCTGCCCGGCATGAATCCCTTTTTTTTGTATCTATATCCCGCAAGATGATATTA
rJMSF015H18+ TGCCCTCCTGCCCGGCATGAATCCCTTTTTTTTGTATCTATATCCCGCAAGATGATATTA
rJMFF049B10+ TGCCCTCCTGCCCGGCATGAATCCCTTTTTTTTGTATCTATATCCCGCAAGATGATATTA
____________________________________________________________
consensus TGCCCTCCTGCCCGGCATGAATCCCTTTTTTTTGTATCTATATCCCGCAAGATGATATTA
. : . : . : . : . : . :
rJMSF013J20+ ATATCAGTCGAACCTAAACAGCTCGATCCGATTTGTAATAATGTTCTATGGTGAGAGGCA
rJMSF015H18+ ATA-CAGTCGAACCTAAACAGCTCGATCCGATTTGTAATAATGTTCTATGGTGAGAGGCA
rJMFF049B10+ ATA-CAGTCGAACCTAAACAGCTCGATCCGATTTGTAATAATGTTCTATGGTGAGAGGCA
____________________________________________________________
consensus ATA-CAGTCGAACCTAAACAGCTCGATCCGATTTGTAATAATGTTCTATGGTGAGAGGCA
. : . : . : . : . : . :
rJMSF013J20+ TGCTGGGTAAACTTTG
rJMSF015H18+ TGCTGGGTAAACTTTGCTGTTTT
rJMFF049B10+ TGCTGGGTAAACTTTGCTGTTTTTGTCTGATGATAAAATGAATGAAATGAGGTTTCAGGA
____________________________________________________________
consensus TGCTGGGTAAACTTTGCTGTTTTTGTCTGATGATAAAATGAATGAAATGAGGTTTCAGGA
. : . : . : . : . : . :
rJMFF049B10+ GACTCACAATTTGACTTTGCAAAAAAAAAAAAAAAACTTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus GACTCACAATTTGACTTTGCAAAAAAAAAAAAAAAACTTCCAGGGTGATCCGCCATAAGG