Contig 011206:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022B18Sequence506009274 (5)ref|XP_006350582.1|8e-31PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [737011206 (4)emb|CDP05091.1|1e-78unnamed protein product [Coffea canephora]
JMFF048D13Sequence381009274 (5)ref|XP_006350582.1|2e-18PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [369011206 (4)gb|KCW90557.1|2e-36hypothetical protein EUGRSUZ_A026652, partial [Eucalyptus grandis] gb|KCW90558.1
JMSF017I17Sequence485009274 (5)ref|XP_006350582.1|7e-30PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [750011206 (4)ref|XP_004308009.1|2e-100PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [Fraga
JMSF052M12Sequence553009274 (5)ref|XP_006350582.1|2e-30PREDICTED: RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like [908011206 (4)emb|CDP05091.1|1e-146unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF052M12+ AGCTGAAGCAACAAATATAGATGTCGTTCAGCTAAGGAAAACAT
                      ____________________________________________________________
consensus AGCTGAAGCAACAAATATAGATGTCGTTCAGCTAAGGAAAACAT
 
. : . : . : . : . : . :
rJMSF052M12+ TAGAAGTCGGGCAAGCTGCAAGAAACAAATTGATCAAGCACAATCTGCGCCTTGTTATGT
                      ____________________________________________________________
consensus TAGAAGTCGGGCAAGCTGCAAGAAACAAATTGATCAAGCACAATCTGCGCCTTGTTATGT
 
. : . : . : . : . : . :
rJMSF052M12+ TTGTCGTCAACAAATATTTTCAAGACTTTGCTAGTAGTCCGAGGTTCCAAGACCTGTGCC
                      ____________________________________________________________
consensus TTGTCGTCAACAAATATTTTCAAGACTTTGCTAGTAGTCCGAGGTTCCAAGACCTGTGCC
 
. : . : . : . : . : . :
rJMSF017I17+ TTGAACCCAAAAGGAAGTTCC
rJMFF022B18+ TTGAACCCAAAAGGAAGTTCC
rJMSF052M12+ AAGCAGGCGTGAAGGGCCTTATAACAGCCANTGATCGATTTGAACCCAAAAGGAAGTTCC
                      ____________________________________________________________
consensus AAGCAGGCGTGAAGGGCCTTATAACAGCCANTGATCGATTTGAACCCAAAAGGAAGTTCC
 
. : . : . : . : . : . :
rJMSF017I17+ GCCTCTCAACATATGGCCTGTTTTGGATCAGACACGCAATTATACGCTCCATCACTCTCT
rJMFF022B18+ GCNTCTCAACATATGGCCTGTTTTGGATCAGACACGCAATTATACGCTCCATCACTCTCT
rJMSF052M12+ GCCTCTCAACATATGGCCTGTTTTGGATCAGACACGCAATTATACGCTCCATCACTCTCT
                      ____________________________________________________________
consensus GCCTCTCAACATATGGCCTGTTTTGGATCAGACACGCAATTATACGCTCCATCACTCTCT
 
. : . : . : . : . : . :
rJMSF017I17+ CCAGCTTCACTAAGGTCTCCTTTGGACTTGAATCGGTGAGAGCGGAAATTCAGAAGGCGA
rJMFF022B18+ CCAGCTTCACTAAGGTCTCCTTTGGACTTGAATCGGTGAGAGCGGAAATTCAGAAGGCGA
rJMSF052M12+ CCAGCTTCACTAAGGTCTCCTTTGGACTTGAATCGGTGAGAGCGGAAATTCAGAAGGCGA
                      ____________________________________________________________
consensus CCAGCTTCACTAAGGTCTCCTTTGGACTTGAATCGGTGAGAGCGGAAATTCAGAAGGCGA
 
. : . : . : . : . : . :
rJMSF017I17+ AAATGGAGCTGCTGGTGAAGCTACAAAGGATGCCAACAGAGAATGAGGTGACAGAAAGAG
rJMFF022B18+ AAATGGAGCTGCTGGTGAAGCTACAAAGGATGCCAACAGAGAATGAGGTGACAGAAAGAG
rJMSF052M12+ AAATGGAGCTGCTGGTGAAGCTACAAAGGATGCCAACAGAGAATGAGGTGACAGAAAGAG
                      ____________________________________________________________
consensus AAATGGAGCTGCTGGTGAAGCTACAAAGGATGCCAACAGAGAATGAGGTGACAGAAAGAG
 
. : . : . : . : . : . :
rJMSF017I17+ TTGGAATCTCCCGGGAGAGATATCACGAAGTTATGAAAGTTTCGAAGCCCGTCTTATCCC
rJMFF022B18+ TTGGAATCTCCCGGGAGAGATATCACGAAGTTATGAAAGTTTCGAAGCCCGTCTTATCCC
rJMSF052M12+ TTGGAATCTCCCGGGAGAGATATCACGAAGTTATGAAAGTTTCGAAGCCCGTCTTATCCC
                      ____________________________________________________________
consensus TTGGAATCTCCCGGGAGAGATATCACGAAGTTATGAAAGTTTCGAAGCCCGTCTTATCCC
 
. : . : . : . : . : . :
rJMSF017I17+ TCAATGCAAAGCACAAGACAACGCAGGAAGAGCTCATCGACGGCATCACTGATGTGGATG
rJMFF022B18+ TCAATGCAAAGCACAAGACAACGCAGGAAGAGCTCATCGACGGCATCACTGATGTGGATG
rJMSF052M12+ TCAATGCAAAGCACAAGACAACGCAGGAAGAGCTCATCGACGGCATCACTGATGTGGATG
                      ____________________________________________________________
consensus TCAATGCAAAGCACAAGACAACGCAGGAAGAGCTCATCGACGGCATCACTGATGTGGATG
 
. : . : . : . : . : . :
rJMSF017I17+ ATGTTGAAGGCGATAAGCGCAAGCATCCCGCTCTTCTCAGACTCGCCCTCGATGATGTGC
rJMFF022B18+ ATGTTGAAGGCGATAAGCGCAAGCATCCCGCTCTTCTCAGACTCGCCCTCGATGATGTGC
rJMSF052M12+ ATGTTGAAGGCGATAAGCGCAAGCATCCCGCTCTTCTCAGACTCGCCCTCGATGATGTGC
rJMFF048D13+ ATGATGTGC
                      ____________________________________________________________
consensus ATGTTGAAGGCGATAAGCGCAAGCATCCCGCTCTTCTCAGACTCGCCCTCGATGATGTGC
 
. : . : . : . : . : . :
rJMSF017I17+ TTGATTCTCTGAAGCCGAAAGAAAGTCTGGTGATGAGACAAAGATACGGTCTTGATGGAA
rJMFF022B18+ TTGATTCTCTGAAGCCGAAAGAAAGTC-GGTGATGAGACAAAGATACGGTCTTGATGGAA
rJMSF052M12+ TTGATTCTCTGAAGCCGAAAGAAAGTCTGGTGATGAGACAAAGATACGGTCTTGATGGAA
rJMFF048D13+ TTGATTCTCTGAAGCCGAAAGAAAGTCTGGTGATGAGACAAAGATACGGTCTTGATGGAA
                      ____________________________________________________________
consensus TTGATTCTCTGAAGCCGAAAGAAAGTCTGGTGATGAGACAAAGATACGGTCTTGATGGAA
 
. : . : . : . : . : . :
rJMSF017I17+ AGGGCGACAGAACGCTGGGAGAAATTGCAGGAAATTTAAACATTTCGAGAGAGATGGTTA
rJMFF022B18+ AGGGCGACAGAACGCTGGGAGAAATTGCAGGAAATTTAAACATTTCGAGAGAGATGGTTA
rJMSF052M12+ AGGGCGACAGAACGCTGGGAGAAATTGCAGGAAATTTAAACATTTCGAGAGAGATGGTTA
rJMFF048D13+ AGGGCGACAGAACGCTGGGAGAAATTGCAGGAAATTTAAACATTTCGAGAGAGATGGTTA
                      ____________________________________________________________
consensus AGGGCGACAGAACGCTGGGAGAAATTGCAGGAAATTTAAACATTTCGAGAGAGATGGTTA
 
. : . : . : . : . : . :
rJMSF017I17+ GGAAGCATGAAGTGAAGGCTCTGATGAAGCTTAAGCATCCTGCTCGAGTGGATTACCTTC
rJMFF022B18+ GGAAGCATGAAGTGAAGGCTCTGATGAAGCTTAAGCATCCTGCTCGAGTGGATTACCTTC
rJMSF052M12+ GGAAGCATGAAGTGAAGGCTCTGATGAAGCTTAAGCATCCTGCTCGAGTGGATTACCTTC
rJMFF048D13+ GGAAGCATGAAGTGAAGGCTCTGATGAAGCTTAAGCATCCTGCTCGAGTGGATTACCTTC
                      ____________________________________________________________
consensus GGAAGCATGAAGTGAAGGCTCTGATGAAGCTTAAGCATCCTGCTCGAGTGGATTACCTTC
 
. : . : . : . : . : . :
rJMSF017I17+ GCAGATACATTTTCTAAATGTCTCAACAAATTATATATGTCCTGTATATTAACTAATCAT
rJMFF022B18+ GCAGATACATTTTCTAA
rJMSF052M12+ GCAGATACATTTTCTAAATGTCTCAACAAATTATATATGTCCTGTATATTAACTAATCAT
rJMFF048D13+ GCAGATACATTTTCTAAATGTCTCAACAAATTATATATGTCCTGTATATTAACTAATCAT
                      ____________________________________________________________
consensus GCAGATACATTTTCTAAATGTCTCAACAAATTATATATGTCCTGTATATTAACTAATCAT
 
. : . : . : . : . : . :
rJMSF017I17+ TATATATATATATGTTTATAGTTACCGGTATTATATCATAGTAGTACTGTAATACTTGTA
rJMSF052M12+ TATATATATATATGTTTATAGTTACCGGTATTATATCATAGTAGTACTGTAATACTTGTA
rJMFF048D13+ TATATATATATATGTTTATAGTTACCGGTATTATATCATAGTAGTACTGTAATACTTGTA
                      ____________________________________________________________
consensus TATATATATATATGTTTATAGTTACCGGTATTATATCATAGTAGTACTGTAATACTTGTA
 
. : . : . : . : . : . :
rJMSF017I17+ ATTCACATTAATTATAGAT
rJMSF052M12+ ATTCACATTAATTATAGAT
rJMFF048D13+ ATTCACATTAATTATAGATTCGCAGTAGATCTAAAACTACAAGAATTTGAATGTTAAAAG
                      ____________________________________________________________
consensus ATTCACATTAATTATAGATTCGCAGTAGATCTAAAACTACAAGAATTTGAATGTTAAAAG