Contig 011194:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015I02Sequence541003160 (7)ref|XP_004230008.1|2e-40PREDICTED: probable mitochondrial chaperone BCS1-A [Solanum lycopersicum]425011194 (6)ref|XP_009596448.1|4e-09PREDICTED: mitochondrial chaperone BCS1-like [Nicotiana tomentosiformis]
JMFF021O09Sequence501003160 (7)ref|XP_009596448.1|1e-38PREDICTED: mitochondrial chaperone BCS1-like [Nicotiana tomentosiformis]383011194 (6)
JMFF042L01Sequence642003160 (7)ref|XP_009596448.1|5e-52PREDICTED: mitochondrial chaperone BCS1-like [Nicotiana tomentosiformis]255011194 (6)
JMFF047D18Sequence614003160 (7)ref|XP_009596448.1|2e-58PREDICTED: mitochondrial chaperone BCS1-like [Nicotiana tomentosiformis]524011194 (6)ref|XP_009794987.1|2e-27PREDICTED: mitochondrial chaperone BCS1-like [Nicotiana sylvestris]
JMFS150G01Sequence210011194 (6)ref|XP_009596448.1|5e-11PREDICTED: mitochondrial chaperone BCS1-like [Nicotiana tomentosiformis]
JMSF040L11Sequence675003160 (7)ref|XP_009596448.1|7e-90PREDICTED: mitochondrial chaperone BCS1-like [Nicotiana tomentosiformis]618011194 (6)ref|XP_009794987.1|7e-42PREDICTED: mitochondrial chaperone BCS1-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF040L11+ CTCCGGCCG
                      ____________________________________________________________
consensus CTCCGGCCG
 
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rJMSF040L11+ GGCAGAATNGACGTCCNCATCCNCTTTCCCTTGTGNGATTTCAACTCCTTCAAATGTTTA
                      ____________________________________________________________
consensus GGCAGAATNGACGTCCNCATCCNCTTTCCCTTGTGNGATTTCAACTCCTTCAAATGTTTA
 
. : . : . : . : . : . :
rJMSF040L11+ GCAAACAGCTACTTAGGNGTAAAAGNGCNCNAGCTGTTTCCCCNGGTGGNGGNGATTTTT
                      ____________________________________________________________
consensus GCAAACAGCTACTTAGGNGTAAAAGNGCNCNAGCTGTTTCCCCNGGTGGNGGNGATTTTT
 
. : . : . : . : . : . :
rJMSF040L11+ CAGACCGGCGCGACGTTGAGCCCGGCGGAAATNGGAGAACTAATGCTGGTGCNCCGGAGC
rJMFF047D18+ TGAGCCCGGCGGAAATCGGAGAACTAATGCTGGTGCACCGGAGC
                      ____________________________________________________________
consensus CAGACCGGCGCGACGTTGAGCCCGGCGGAAATCGGAGAACTAATGCTGGTGCACCGGAGC
 
. : . : . : . : . : . :
rJMSF040L11+ TNCCCGAGCCGCGCCNTTAAGACGGTGATCNCGGCGCTGCNGACGGACGGAAGACCCGGC
rJMFF015I02+ CCCGAGCCGNGCCNTTAAGGNGGNGATCNCGGCGCTGCNGACGGACGGAAGACCCGGC
rJMFF047D18+ TCCCCGAGCCGCGCCATTAAGACGGTGATCACGGCGCTGCAGACGGACGGAAGACACGGC
                      ____________________________________________________________
consensus TCCCCGAGCCGCGCCATTAAGACGGTGATCACGGCGCTGCAGACGGACGGAAGACCCGGC
 
. : . : . : . : . : . :
rJMSF040L11+ GGGAGATGGCGTCGGTTGACCGAAATNTNGTNTCTGGNGACGCCGCCGCGGCCGATTAGT
rJMFF015I02+ GGGAGATGGNGTCGGTTGACCGAAATTTTGTTTTTGGGGACGCCNCCGCGGCCGATTAGT
JMFS150G01+ CGCGGCCGATTAGT
rJMFF047D18+ GGGAGATGGCGTCGGTTGACCGAAATCTCGTCTCTGGCGACGCCGCCGCGGCCGATTAGT
                      ____________________________________________________________
consensus GGGAGATGGCGTCGGTTGACCGAAATTTTGTTTCTGGGGACGCCGCCGCGGCCGATTAGT
 
. : . : . : . : . : . :
rJMSF040L11+ GCGGACGAGCAAGGTTGCGCCCCCNGGAAAGATACCGTCCCNGTAGCCNAGGAGTTCCGG
rJMFF015I02+ GCGGNCGNGCAAGGTTGNGCCCCCTGGAAAGATNCCGTCCCNGTAGCCNAGGNGTTCCGG
rJMFF021O09+ CCGTCCCNGTANCCNAGGAGTTNCGG
JMFS150G01+ GCGGACGAGCAAGGCTGCGCCACCTGGAAAGATACCGTCCCTGTAGCCAAGGAGTTCCGG
rJMFF047D18+ GCGGACGAGCAAGGTTGCGCCACCTGGAAAGATACCGTCCCTGTAGCCAAGGAGTTCCGG
                      ____________________________________________________________
consensus GCGGACGAGCAAGGTTGCGCCCCCTGGAAAGATACCGTCCCTGTAGCCAAGGAGTTCCGG
 
. : . : . : . : . : . :
rJMSF040L11+ AAGCTGTNCGGACTGTTGAGAATGAAAAGCGCCNAGAGATTTGAACCTTTGGATCNTGAT
rJMFF015I02+ AAGCTGTNCGGNCTGTTGNGAANGAAAAGCGCCAAGNGATTTGAACCTTTGGATCATGAT
rJMFF042L01+ CTGTACGGACTGTTGAGAATGAAAAGCGCCAAGAGATTTGAACCTTTGGATCATGAT
rJMFF021O09+ AANCTGTTCGGNCTNTTGAGAANGAAAANNGCCNAGAGATTTGAACCTTTGGATCANGAT
JMFS150G01+ AAGCTGTACGGACTGTTGAGAATGAAAAGCGCCAAGAGATCTGAACCTCTGGATCATGAT
rJMFF047D18+ AAGCTGTACGGACTGTTGAGAATGAAAAGCGCCAAGAGATCTGAACCTCTGGATCATGAT
                      ____________________________________________________________
consensus AAGCTGTACGGACTGTTGAGAATGAAAAGCGCCAAGAGATTTGAACCTTTGGATCATGAT
 
. : . : . : . : . : . :
rJMSF040L11+ TTGGAATCAATCCAACGGTGAACNTTTTNTTACAAAAAGATAATCAAAATNTTCTTT-AA
rJMFF015I02+ TTGGAATCAATCCNACGGNGAACNTTTTNTTNCAAAAAGATAATCAAAATTTTTTTTAAA
rJMFF042L01+ TTGGAATCAATCCAACGGTGAACATTTTATTACAAAAAGATAATCAAAATTTTTTTTAAA
rJMFF021O09+ TTGGAATCAATCCNACGGNGNACNTTTTNTTTCAAAAAGATAATCAAAATTTTTTTTAAA
JMFS150G01+ TTGGAATCAATCCAACGGTGAACATTTTATTACAAAAAGATAATCAAAATCTCCTTAAAA
rJMFF047D18+ TTGGAATCAATCCAACGGTGAACATTTTATTACAAAAAGATAATCAAAATCTTCTTTAAA
                      ____________________________________________________________
consensus TTGGAATCAATCCAACGGTGAACATTTTATTACAAAAAGATAATCAAAATTTTTTTTAAA
 
. : . : . : . : . : . :
rJMSF040L11+ AAAAAAAAATATTTTTGTAATTTGTCAATCTTATCATTGATACAGCAAGTAAGATTAAAG
rJMFF015I02+ AAAAAAAAATATTTTTGTAATTTGTCAATCTTATCATTGATACAGCAAGTAAGATTAAAG
rJMFF042L01+ AAAAAAAAATATTTTTGTAATTTGTCAATCTTATCATTGATACAGCAAGTAAGATTAAAG
rJMFF021O09+ AAAAAAAAATATTTTTGTAATTTGTCAATCTTATCATTGATACAGCAAGTAAGATTAAAG
JMFS150G01+ AAAAAAAAA
rJMFF047D18+ AAAAAAAAATATTTTTGTAATTTGTCAATCTTATCATTGATACAGCAAGTAAGATTAAAG
                      ____________________________________________________________
consensus AAAAAAAAATATTTTTGTAATTTGTCAATCTTATCATTGATACAGCAAGTAAGATTAAAG
 
. : . : . : . : . : . :
rJMSF040L11+ ATTTAGGATTTTGTTTAAACTTGTGGTTGAGCTCCGCCCTTGTAAGCCGTACGATGTAAA
rJMFF015I02+ ATTTAGGATTTTGTTTAAACTTGTGGTTGAGCTCCGCCCTTGTAAGCCGTACGAT
rJMFF042L01+ ATTTAGGATTTTGTTTAAACTTGTGGTTGAGCTCCGCCCTTGTAAGCCGTACGATGTAAA
rJMFF021O09+ ATTTAGGATTTTGTTTAAACTTGTGGTTGAGCTCCGCCCTTGTAAGCCGTACGATGTAAA
rJMFF047D18+ ATTTAGGATTTTGTTTAAACTTGTGGTTGAGCTCCGCCCTTGTAAGCCGTACGATGTAAA
                      ____________________________________________________________
consensus ATTTAGGATTTTGTTTAAACTTGTGGTTGAGCTCCGCCCTTGTAAGCCGTACGATGTAAA
 
. : . : . : . : . : . :
rJMSF040L11+ TGCTAAT
rJMFF042L01+ TGCTAATGTTTTATTGG
rJMFF021O09+ TGCTAAT
rJMFF047D18+ TGCTAATGTTTTATTGGATTAAATATAGGTTATGGGGAAAGATGAGATCAATTTGATACT
                      ____________________________________________________________
consensus TGCTAATGTTTTATTGGATTAAATATAGGTTATGGGGAAAGATGAGATCAATTTGATACT