Contig 011191:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046M10Sequence587007477 (3)emb|CDP10939.1|2e-82unnamed protein product [Coffea canephora]595011191 (2)ref|XP_004242038.1|2e-36PREDICTED: replication factor C subunit 3 [Solanum lycopersicum]
JMSF028F03Sequence639007477 (3)gb|KJB59291.1|2e-95hypothetical protein B456_009G247600 [Gossypium raimondii]746011191 (2)ref|XP_009629771.1|1e-143PREDICTED: replication factor C subunit 3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF028F03+          TGAAGTTAGTGCTGTTGGATGAGTCAGATGCCATGACAAAGGATGCACAGTTTGCTCTGC
                      ____________________________________________________________
consensus             TGAAGTTAGTGCTGTTGGATGAGTCAGATGCCATGACAAAGGATGCACAGTTTGCTCTGC
 
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rJMSF028F03+          GTCGAGTAATTGAGAAATACACAAGACATACTCGGTTTGCACTGATTTGCAACAATGTCA
                      ____________________________________________________________
consensus             GTCGAGTAATTGAGAAATACACAAGACATACTCGGTTTGCACTGATTTGCAACAATGTCA
 
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rJMSF028F03+          ACAAGGTGATCCCTGCATTACAATCACGGTGTACACGGTTCCGGTTTCCACCTCTTGAGG
                      ____________________________________________________________
consensus             ACAAGGTGATCCCTGCATTACAATCACGGTGTACACGGTTCCGGTTTCCACCTCTTGAGG
 
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rJMSF028F03+          CTGTTCATGTAACTGAGAGGCTTAAACATGTTATTGAATTGGAAAGACTTGATGTACCAG
                      ____________________________________________________________
consensus             CTGTTCATGTAACTGAGAGGCTTAAACATGTTATTGAATTGGAAAGACTTGATGTACCAG
 
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rJMSF028F03+          AGAGTGGCTTGAAGGCACTGGTGCAGCTTAGCAATGGTGACATGAGAAAGGCTTTGAACA
                      ____________________________________________________________
consensus             AGAGTGGCTTGAAGGCACTGGTGCAGCTTAGCAATGGTGACATGAGAAAGGCTTTGAACA
 
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rJMSF028F03+          TTTTGCAGTCAACGCATATGGCCTCTCAGCAGATAACAGAAGAGGCTGTCTATTTATGCA
                      ____________________________________________________________
consensus             TTTTGCAGTCAACGCATATGGCCTCTCAGCAGATAACAGAAGAGGCTGTCTATTTATGCA
 
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rJMSF028F03+          CTGGGCATCCATTGCCCAAAGACATAGAGCAAATCTCATACTGGCTTCTAAATGAGCCCT
                      ____________________________________________________________
consensus             CTGGGCATCCATTGCCCAAAGACATAGAGCAAATCTCATACTGGCTTCTAAATGAGCCCT
 
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rJMSF028F03+          TTGCTGTCGGTTATAAACGAATATTGGAAACTAAAACAAGGAAAGGATTGGCTTTGGTAG
rJMFF046M10+                            GAATATTGGAAACTAAAACAAGGAAAGGATTGGCTNTGGTAG
                      ____________________________________________________________
consensus             TTGCTGTCGGTTATAAACGAATATTGGAAACTAAAACAAGGAAAGGATTGGCTTTGGTAG
 
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rJMSF028F03+          ATATTGTAAGAGAAGTGACCATGTTTGTCTTCAAGATAAAGATGCCATCGGATGTGCGTA
rJMFF046M10+          ATATTGTAAGAGAAGTGACCATGTTTGTCTTCAAGATAAAGATGCCATCGGATGTGCGTA
                      ____________________________________________________________
consensus             ATATTGTAAGAGAAGTGACCATGTTTGTCTTCAAGATAAAGATGCCATCGGATGTGCGTA
 
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rJMSF028F03+          TTCAGCTTATAAATGCTATGGCTGAAATTGAATATAGGTTGACCTTCGGTTGCAATGATA
rJMFF046M10+          TTCAGCTTATAAATGCTATGGCTGAAATTGAATATAGGTTGACCTTCGGTTGCAATGATA
                      ____________________________________________________________
consensus             TTCAGCTTATAAATGCTATGGCTGAAATTGAATATAGGTTGACCTTCGGTTGCAATGATA
 
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rJMSF028F03+          AGTTGCAGCTTGGATCATTGATAGCCGCTTTTACGCAAGCACGGTCTGCTCTGGTTGCTG
rJMFF046M10+          AGTTGCAGCTTGGATCATTGATAGCCGCTTTTACGCAAGCACGGTCTGCTCTGGTTGCTG
                      ____________________________________________________________
consensus             AGTTGCAGCTTGGATCATTGATAGCCGCTTTTACGCAAGCACGGTCTGCTCTGGTTGCTG
 
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rJMSF028F03+          CTGCAAAGTAGCCACACAATGGTTTTGTAACATAGTTTCTATTTTGTCATTGCTCTGTTC
rJMFF046M10+          CTGCAAAGTAGCCACACAATGGTTTTGTAACATAGTTTCTATTTTGTCATTGCTCTGTTC
                      ____________________________________________________________
consensus             CTGCAAAGTAGCCACACAATGGTTTTGTAACATAGTTTCTATTTTGTCATTGCTCTGTTC
 
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rJMSF028F03+          TATTGACTGGGGAGTGTTGGATGTTT                                  
rJMFF046M10+          TATTGACTGGGGAGTGTTGGATGTTTTGAGAATGCTAATTTAGTATCATGGGTAATGTTT
                      ____________________________________________________________
consensus             TATTGACTGGGGAGTGTTGGATGTTTTGAGAATGCTAATTTAGTATCATGGGTAATGTTT
 
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rJMFF046M10+          TTAGTGTAAACTTCTCTCCCAAACGGTTGAATCCCCAACCTCAAGGGCCCCACACCCCGA
                      ____________________________________________________________
consensus             TTAGTGTAAACTTCTCTCCCAAACGGTTGAATCCCCAACCTCAAGGGCCCCACACCCCGA
 
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rJMFF046M10+          CCCGATAGAGCAATTGAGAGGATCTGAACACTTAAGCTTACTCGTAATTGCCTAATAGGG
                      ____________________________________________________________
consensus             CCCGATAGAGCAATTGAGAGGATCTGAACACTTAAGCTTACTCGTAATTGCCTAATAGGG
 
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rJMFF046M10+          ATAATGTATTAGCTCTGTCTTAATAGTCAAAATTAAAGGAAAATCATAGATGCTAGAGGA
                      ____________________________________________________________
consensus             ATAATGTATTAGCTCTGTCTTAATAGTCAAAATTAAAGGAAAATCATAGATGCTAGAGGA
 
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rJMFF046M10+          CATGATGTCCCCTGGAATAGGTGGTTGAATATTAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             CATGATGTCCCCTGGAATAGGTGGTTGAATATTAAAAAAAAAAAAAAAACTCTCCAGGGT