clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF045O20 | Sequence | 600 | 012976 (4) | emb|CDP00111.1| | 6e-05 | unnamed protein product [Coffea canephora] | 620 | 011184 (3) | pdb|2JUH|A | 7e-44 | Chain A, Solution Structure Of Dna Binding Domain Of Ngtrf1 |
JMSF038F24 | Sequence | 102 | 012976 (4) | 835 | 011184 (3) | ref|XP_009785792.1| | 2e-41 | PREDICTED: telomere repeat-binding protein 3-like isoform X1 [Nicotiana sylvest | |||
JMSF050E06 | Sequence | 675 | 012976 (4) | ref|XP_009783131.1| | 2e-33 | PREDICTED: telomere repeat-binding protein 4-like [Nicotiana sylvestris] | 728 | 011184 (3) | ref|XP_009785793.1| | 6e-53 | PREDICTED: telomere repeat-binding protein 3-like isoform X2 [Nicotiana sylvest |
This contig is upended
. : . : . : . : . : . :
rJMSF038F24+ TTTTCAGTGTTAGGGAGTGTTTATACTGTGAATTGATCATAA
____________________________________________________________
consensus TTTTCAGTGTTAGGGAGTGTTTATACTGTGAATTGATCATAA
. : . : . : . : . : . :
rJMSF038F24+ TTTTAAACCCAGGAATCCAGCCAGCCCGAATTTGGATTTGGCACTTTTAGCTATTCCTCC
____________________________________________________________
consensus TTTTAAACCCAGGAATCCAGCCAGCCCGAATTTGGATTTGGCACTTTTAGCTATTCCTCC
. : . : . : . : . : . :
rJMSF038F24+ CCATCCTTCTCCAGAATTTAAGTTGGATAAACATGATGACGAGAGTAACCATGAGTCCTT
rJMSF050E06+ TTCTCCAGAATTTAAGTTGGATAAACATGATGACGAGAGTAACCATGAGTCCTT
____________________________________________________________
consensus CCATCCTTCTCCAGAATTTAAGTTGGATAAACATGATGACGAGAGTAACCATGAGTCCTT
. : . : . : . : . : . :
rJMSF038F24+ GGAGGGCCCCACTGATGCATCAAGAAATGTAGTTGGCGCGGAGTCCCAAGCTCTGGTTGC
rJMSF050E06+ GGAGGGCCCCACTGATGCATCAAGAAATGTAGTTGGCGCGGAGTCCCAAGCTCTGGTTGC
____________________________________________________________
consensus GGAGGGCCCCACTGATGCATCAAGAAATGTAGTTGGCGCGGAGTCCCAAGCTCTGGTTGC
. : . : . : . : . : . :
rJMSF038F24+ AGTTGAGCGAACAAATGTGGAGCCACTTGCTGTAGTAGTCCCGATGAACCAGAAAATGTA
rJMSF050E06+ AGTTGAGCGAACAAATGTGGAGCCACTTGCTGTAGTAGTCCCGATGAACCAGAAAA-GTA
rJMFF045O20+ GTA
____________________________________________________________
consensus AGTTGAGCGAACAAATGTGGAGCCACTTGCTGTAGTAGTCCCGATGAACCAGAAAATGTA
. : . : . : . : . : . :
rJMSF038F24+ GACGGTCTGAACTTTCACAGCGTAGGACAAGGAGACCGTTCTCGGTTGCTGAAGTGGAAG
rJMSF050E06+ GACGGTCTGAACTTTCACAGCGTAGGACAAGGAGACCGTTCTCGGTTGCTGAAGTGGAAG
rJMFF045O20+ GACGGTCTGAACTTTCACAGCGTAGGACAAGGAGACCGTTCTCGGTTGCTGAAGTGGAAG
____________________________________________________________
consensus GACGGTCTGAACTTTCACAGCGTAGGACAAGGAGACCGTTCTCGGTTGCTGAAGTGGAAG
. : . : . : . : . : . :
rJMSF038F24+ CGTTGGTGGAAGCTGTAGAGCAGCTTGGAACCGGAAGGTGGCGTGATGTAAAAATGCGTG
rJMSF050E06+ CGTTGGTGGAAGCTGTAGAGCAGCTTGGAACCGGAAGGTGGCGTGATGTAAAAATGCGTG
rJMFF045O20+ CGTTGGTGGAAGCTGTAGAGCAGCTTGGAACCGGAAGGTGGCGTGATGTAAAAATGCGTG
____________________________________________________________
consensus CGTTGGTGGAAGCTGTAGAGCAGCTTGGAACCGGAAGGTGGCGTGATGTAAAAATGCGTG
. : . : . : . : . : . :
rJMSF038F24+ CTTTCGACAANGCAGATCACAGGACATATGTCGACTTAAAGGACAAGTGGAAGACGTTGG
rJMSF050E06+ CTTTCGACAACGCAGATCACAGGACATATGTCGACTTAAAGGACAAGTGGAAGACGTTGG
rJMFF045O20+ CTTTCGACAACGCAGATCACAGGACATATGTCGACTTAAAGGACAAGTGGAAGACGTTGG
____________________________________________________________
consensus CTTTCGACAACGCAGATCACAGGACATATGTCGACTTAAAGGACAAGTGGAAGACGTTGG
. : . : . : . : . : . :
rJMSF038F24+ TCCACACAGCGAGCATTGCCCCGCAGCAAAGGCGGGGGGAGCCGGTGCCGCAGGAGCTTC
rJMSF050E06+ TCCACACAGCGAGCATTGCCCCGCAGCAAAGGCGGGGGGAGCCGGTGCCGCAGGAGCTTC
rJMFF045O20+ TCCACACAGCGAGCATTGCCCCGCAGCAAAGGCGGGGGGAGCCGGTGCCGCAGGAGCTTC
____________________________________________________________
consensus TCCACACAGCGAGCATTGCCCCGCAGCAAAGGCGGGGGGAGCCGGTGCCGCAGGAGCTTC
. : . : . : . : . : . :
rJMSF038F24+ TGGACCGCGTGTTGGCCGCGCATTCATTCTGGTCGCTGCAGCAGGCGAAGCAAAACGGGA
rJMSF050E06+ TGGACCGCGTGTTGGCCGCGCATTCATTCTGGTCGCTGCAGCAGGCGAAGCAAAACGGGA
rJMFF045O20+ TGGACCGCGTGTTGGCCGCGCATTCATTCTGGTCGCTGCAGCAGGCGAAGCAAAACGGGA
____________________________________________________________
consensus TGGACCGCGTGTTGGCCGCGCATTCATTCTGGTCGCTGCAGCAGGCGAAGCAAAACGGGA
. : . : . : . : . : . :
rJMSF038F24+ AGGCTCACACTGAAGCTGTGACGATTGGTGATGCCCCGCCGCAGCTTCTAGAGGCTTGAA
rJMSF050E06+ AGGCTCACACTGAAGCTGTGACGATTGGTGATGCCCCGCCGCAGCTTCTAGAGGCTTGAA
rJMFF045O20+ AGGCTCACACTGAAGCTGTGACGATTGGTGATGCCCCGCCGCAGCTTCTAGAGGCTTGAA
____________________________________________________________
consensus AGGCTCACACTGAAGCTGTGACGATTGGTGATGCCCCGCCGCAGCTTCTAGAGGCTTGAA
. : . : . : . : . : . :
rJMSF038F24+ ACCTCAAAGCTGGTCTGTTTCATTTCTGAAATGTAAAGAATTTNTTAACATAAATTGTAG
rJMSF050E06+ ACCTCAAAGCTGGTCTGTTTCATTTCTGAAATGTAAAGAATTTATTAACATAAATTGTAG
rJMFF045O20+ ACCTCAAAGCTGGTCTGTTTCATTTCTGAAATGTAAAGAATTTATTAACATAAATTGTAG
____________________________________________________________
consensus ACCTCAAAGCTGGTCTGTTTCATTTCTGAAATGTAAAGAATTTATTAACATAAATTGTAG
. : . : . : . : . : . :
rJMSF038F24+ AAAACAACAACATTACATTACATTTTCACATGTTTTCTCACAGATTGATTGATTTACCTT
rJMSF050E06+ AAAACAACAACATTACATTACATTTTCACATGTTTTCTCACAGATTGATTGATTTACCTT
rJMFF045O20+ AAAACAACAACACTACATTACATTTTCACATGTTTTCTCACAGATTGATTGATTTACCTT
____________________________________________________________
consensus AAAACAACAACATTACATTACATTTTCACATGTTTTCTCACAGATTGATTGATTTACCTT
. : . : . : . : . : . :
rJMSF038F24+ AGTATTCCATCCCTGCTTGGTGGATATGCCCATTGTAAATGAACCCAA
rJMSF050E06+ AGTATTCCA-CCCTGCTTGGTGGATATGCCCATTGTAAATGAACCCAA
rJMFF045O20+ AGTATTCGA-CCCTGCTTGGTGGATATGCCCATTGTAAATGAACCCAACCAATAAACCTG
____________________________________________________________
consensus AGTATTCCA-CCCTGCTTGGTGGATATGCCCATTGTAAATGAACCCAACCAATAAACCTG
. : . : . : . : . : . :
rJMFF045O20+ TCTAACAGACATCCTAGGACTCTTCTTTTCAAGAATTGATTCAAATGCATTATGTTTATT
____________________________________________________________
consensus TCTAACAGACATCCTAGGACTCTTCTTTTCAAGAATTGATTCAAATGCATTATGTTTATT