Contig 011184:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045O20Sequence600012976 (4)emb|CDP00111.1|6e-05unnamed protein product [Coffea canephora]620011184 (3)pdb|2JUH|A7e-44Chain A, Solution Structure Of Dna Binding Domain Of Ngtrf1
JMSF038F24Sequence102012976 (4)835011184 (3)ref|XP_009785792.1|2e-41PREDICTED: telomere repeat-binding protein 3-like isoform X1 [Nicotiana sylvest
JMSF050E06Sequence675012976 (4)ref|XP_009783131.1|2e-33PREDICTED: telomere repeat-binding protein 4-like [Nicotiana sylvestris]728011184 (3)ref|XP_009785793.1|6e-53PREDICTED: telomere repeat-binding protein 3-like isoform X2 [Nicotiana sylvest

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF038F24+ TTTTCAGTGTTAGGGAGTGTTTATACTGTGAATTGATCATAA
                      ____________________________________________________________
consensus TTTTCAGTGTTAGGGAGTGTTTATACTGTGAATTGATCATAA
 
. : . : . : . : . : . :
rJMSF038F24+ TTTTAAACCCAGGAATCCAGCCAGCCCGAATTTGGATTTGGCACTTTTAGCTATTCCTCC
                      ____________________________________________________________
consensus TTTTAAACCCAGGAATCCAGCCAGCCCGAATTTGGATTTGGCACTTTTAGCTATTCCTCC
 
. : . : . : . : . : . :
rJMSF038F24+ CCATCCTTCTCCAGAATTTAAGTTGGATAAACATGATGACGAGAGTAACCATGAGTCCTT
rJMSF050E06+ TTCTCCAGAATTTAAGTTGGATAAACATGATGACGAGAGTAACCATGAGTCCTT
                      ____________________________________________________________
consensus CCATCCTTCTCCAGAATTTAAGTTGGATAAACATGATGACGAGAGTAACCATGAGTCCTT
 
. : . : . : . : . : . :
rJMSF038F24+ GGAGGGCCCCACTGATGCATCAAGAAATGTAGTTGGCGCGGAGTCCCAAGCTCTGGTTGC
rJMSF050E06+ GGAGGGCCCCACTGATGCATCAAGAAATGTAGTTGGCGCGGAGTCCCAAGCTCTGGTTGC
                      ____________________________________________________________
consensus GGAGGGCCCCACTGATGCATCAAGAAATGTAGTTGGCGCGGAGTCCCAAGCTCTGGTTGC
 
. : . : . : . : . : . :
rJMSF038F24+ AGTTGAGCGAACAAATGTGGAGCCACTTGCTGTAGTAGTCCCGATGAACCAGAAAATGTA
rJMSF050E06+ AGTTGAGCGAACAAATGTGGAGCCACTTGCTGTAGTAGTCCCGATGAACCAGAAAA-GTA
rJMFF045O20+ GTA
                      ____________________________________________________________
consensus AGTTGAGCGAACAAATGTGGAGCCACTTGCTGTAGTAGTCCCGATGAACCAGAAAATGTA
 
. : . : . : . : . : . :
rJMSF038F24+ GACGGTCTGAACTTTCACAGCGTAGGACAAGGAGACCGTTCTCGGTTGCTGAAGTGGAAG
rJMSF050E06+ GACGGTCTGAACTTTCACAGCGTAGGACAAGGAGACCGTTCTCGGTTGCTGAAGTGGAAG
rJMFF045O20+ GACGGTCTGAACTTTCACAGCGTAGGACAAGGAGACCGTTCTCGGTTGCTGAAGTGGAAG
                      ____________________________________________________________
consensus GACGGTCTGAACTTTCACAGCGTAGGACAAGGAGACCGTTCTCGGTTGCTGAAGTGGAAG
 
. : . : . : . : . : . :
rJMSF038F24+ CGTTGGTGGAAGCTGTAGAGCAGCTTGGAACCGGAAGGTGGCGTGATGTAAAAATGCGTG
rJMSF050E06+ CGTTGGTGGAAGCTGTAGAGCAGCTTGGAACCGGAAGGTGGCGTGATGTAAAAATGCGTG
rJMFF045O20+ CGTTGGTGGAAGCTGTAGAGCAGCTTGGAACCGGAAGGTGGCGTGATGTAAAAATGCGTG
                      ____________________________________________________________
consensus CGTTGGTGGAAGCTGTAGAGCAGCTTGGAACCGGAAGGTGGCGTGATGTAAAAATGCGTG
 
. : . : . : . : . : . :
rJMSF038F24+ CTTTCGACAANGCAGATCACAGGACATATGTCGACTTAAAGGACAAGTGGAAGACGTTGG
rJMSF050E06+ CTTTCGACAACGCAGATCACAGGACATATGTCGACTTAAAGGACAAGTGGAAGACGTTGG
rJMFF045O20+ CTTTCGACAACGCAGATCACAGGACATATGTCGACTTAAAGGACAAGTGGAAGACGTTGG
                      ____________________________________________________________
consensus CTTTCGACAACGCAGATCACAGGACATATGTCGACTTAAAGGACAAGTGGAAGACGTTGG
 
. : . : . : . : . : . :
rJMSF038F24+ TCCACACAGCGAGCATTGCCCCGCAGCAAAGGCGGGGGGAGCCGGTGCCGCAGGAGCTTC
rJMSF050E06+ TCCACACAGCGAGCATTGCCCCGCAGCAAAGGCGGGGGGAGCCGGTGCCGCAGGAGCTTC
rJMFF045O20+ TCCACACAGCGAGCATTGCCCCGCAGCAAAGGCGGGGGGAGCCGGTGCCGCAGGAGCTTC
                      ____________________________________________________________
consensus TCCACACAGCGAGCATTGCCCCGCAGCAAAGGCGGGGGGAGCCGGTGCCGCAGGAGCTTC
 
. : . : . : . : . : . :
rJMSF038F24+ TGGACCGCGTGTTGGCCGCGCATTCATTCTGGTCGCTGCAGCAGGCGAAGCAAAACGGGA
rJMSF050E06+ TGGACCGCGTGTTGGCCGCGCATTCATTCTGGTCGCTGCAGCAGGCGAAGCAAAACGGGA
rJMFF045O20+ TGGACCGCGTGTTGGCCGCGCATTCATTCTGGTCGCTGCAGCAGGCGAAGCAAAACGGGA
                      ____________________________________________________________
consensus TGGACCGCGTGTTGGCCGCGCATTCATTCTGGTCGCTGCAGCAGGCGAAGCAAAACGGGA
 
. : . : . : . : . : . :
rJMSF038F24+ AGGCTCACACTGAAGCTGTGACGATTGGTGATGCCCCGCCGCAGCTTCTAGAGGCTTGAA
rJMSF050E06+ AGGCTCACACTGAAGCTGTGACGATTGGTGATGCCCCGCCGCAGCTTCTAGAGGCTTGAA
rJMFF045O20+ AGGCTCACACTGAAGCTGTGACGATTGGTGATGCCCCGCCGCAGCTTCTAGAGGCTTGAA
                      ____________________________________________________________
consensus AGGCTCACACTGAAGCTGTGACGATTGGTGATGCCCCGCCGCAGCTTCTAGAGGCTTGAA
 
. : . : . : . : . : . :
rJMSF038F24+ ACCTCAAAGCTGGTCTGTTTCATTTCTGAAATGTAAAGAATTTNTTAACATAAATTGTAG
rJMSF050E06+ ACCTCAAAGCTGGTCTGTTTCATTTCTGAAATGTAAAGAATTTATTAACATAAATTGTAG
rJMFF045O20+ ACCTCAAAGCTGGTCTGTTTCATTTCTGAAATGTAAAGAATTTATTAACATAAATTGTAG
                      ____________________________________________________________
consensus ACCTCAAAGCTGGTCTGTTTCATTTCTGAAATGTAAAGAATTTATTAACATAAATTGTAG
 
. : . : . : . : . : . :
rJMSF038F24+ AAAACAACAACATTACATTACATTTTCACATGTTTTCTCACAGATTGATTGATTTACCTT
rJMSF050E06+ AAAACAACAACATTACATTACATTTTCACATGTTTTCTCACAGATTGATTGATTTACCTT
rJMFF045O20+ AAAACAACAACACTACATTACATTTTCACATGTTTTCTCACAGATTGATTGATTTACCTT
                      ____________________________________________________________
consensus AAAACAACAACATTACATTACATTTTCACATGTTTTCTCACAGATTGATTGATTTACCTT
 
. : . : . : . : . : . :
rJMSF038F24+ AGTATTCCATCCCTGCTTGGTGGATATGCCCATTGTAAATGAACCCAA
rJMSF050E06+ AGTATTCCA-CCCTGCTTGGTGGATATGCCCATTGTAAATGAACCCAA
rJMFF045O20+ AGTATTCGA-CCCTGCTTGGTGGATATGCCCATTGTAAATGAACCCAACCAATAAACCTG
                      ____________________________________________________________
consensus AGTATTCCA-CCCTGCTTGGTGGATATGCCCATTGTAAATGAACCCAACCAATAAACCTG
 
. : . : . : . : . : . :
rJMFF045O20+ TCTAACAGACATCCTAGGACTCTTCTTTTCAAGAATTGATTCAAATGCATTATGTTTATT
                      ____________________________________________________________
consensus TCTAACAGACATCCTAGGACTCTTCTTTTCAAGAATTGATTCAAATGCATTATGTTTATT