| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF022L12 | Sequence | 772 | 011178 (8) | ref|NP_001182857.1| | 2e-61 | uncharacterized protein LOC100501115 precursor [Zea mays] gb|ACR34922.1| unknown | |||||
| JMFF039H02 | Sequence | 522 | 006728 (7) | gb|KJB79238.1| | 5e-47 | hypothetical protein B456_013G038900 [Gossypium raimondii] | 763 | 011178 (8) | dbj|BAF01745.1| | 169 | putative endomembrane protein EMP70 precusor isolog [Arabidopsis thaliana] |
| JMFF045E17 | Sequence | 628 | 006728 (7) | gb|KHG16990.1| | 8e-63 | Transmembrane 9 superfamily member 3 [Gossypium arboreum] | 582 | 011178 (8) | ref|XP_006385204.1| | 3e-27 | hypothetical protein POPTR_0003s011002g, partial [Populus trichocarpa] gb|ERP630 |
| JMSF002O12 | Sequence | 245 | 006728 (7) | 760 | 011178 (8) | ref|NP_001182857.1| | 3e-61 | uncharacterized protein LOC100501115 precursor [Zea mays] gb|ACR34922.1| unknown | |||
| JMSF017J01 | Sequence | 436 | 006728 (7) | ref|XP_010930775.1| | 97.8 | PREDICTED: transmembrane 9 superfamily member 1 [Elaeis guineensis] ref|XP_01093 | 754 | 011178 (8) | dbj|BAF01745.1| | 191 | putative endomembrane protein EMP70 precusor isolog [Arabidopsis thaliana] |
| JMSF032K14 | Sequence | 666 | 006728 (7) | gb|KHG16990.1| | 2e-73 | Transmembrane 9 superfamily member 3 [Gossypium arboreum] | 616 | 011178 (8) | ref|XP_006385204.1| | 2e-45 | hypothetical protein POPTR_0003s011002g, partial [Populus trichocarpa] gb|ERP630 |
| JMSF046E03 | Sequence | 664 | 006728 (7) | gb|KHG16990.1| | 1e-67 | Transmembrane 9 superfamily member 3 [Gossypium arboreum] | 642 | 011178 (8) | ref|XP_006385204.1| | 4e-45 | hypothetical protein POPTR_0003s011002g, partial [Populus trichocarpa] gb|ERP630 |
| JMSF049A20 | Sequence | 702 | 006728 (7) | gb|KHG16990.1| | 3e-68 | Transmembrane 9 superfamily member 3 [Gossypium arboreum] | 775 | 011178 (8) | ref|XP_006385204.1| | 6e-45 | hypothetical protein POPTR_0003s011002g, partial [Populus trichocarpa] gb|ERP630 |
This contig is upended
. : . : . : . : . : . :
rJMSF017J01+ CTGTAAAGAAGTGGTACCTGACTCC
____________________________________________________________
consensus CTGTAAAGAAGTGGTACCTGACTCC
. : . : . : . : . : . :
rJMSF032K14+ TGAGATGTA-
rJMSF046E03+ TTGGCAGCATATTTATTGAGATGTA-
rJMSF017J01+ TTCGGTAGTCTCCATGATGGGCGGCTTGCTTCCATTGGCAGCATATTTATTGAGATGTA-
rJMFF039H02+ TTGGCAGCATATTTATTGAGATGTAC
____________________________________________________________
consensus TTCGGTAGTCTCCATGATGGGCGGCTTGCTTCCATTGGCAGCATATTTATTGAGATGTA-
. : . : . : . : . : . :
rJMSF032K14+ CTTTGTCTTCACATCCTTTTGGAATT-ACAANGGTGTACTATGTCTATGGATTTATGCTT
rJMSF046E03+ CTTTGTCTTCACATCCTTTTGGGAATTACAAAGGTGTACTATGTCTATGGATTTATGCTT
rJMSF017J01+ CTTTGTCTTCACATCCTTTTGGAATT--ACAAGGTGTACTATGTCTATGGATTTATGCTT
rJMFF022L12+ AGGTGTACTATGTCTATGGATTTATGCTT
rJMSF049A20+ AGGTGTACTATGTCTATGGATTTATGCTT
rJMSF002O12+ AGGTGTACTATGTCTATGGATTTATGCTT
rJMFF039H02+ CTTTGTCTTCACATCCTTTTGGAATT--ACAAGGTGTACTATGTCTATGGATTTATGCTT
____________________________________________________________
consensus CTTTGTCTTCACATCCTTTTGGAATT-ACCAAGGTGTACTATGTCTATGGATTTATGCTT
. : . : . : . : . : . :
rJMSF032K14+ CTGGTTTTCCTGATTCTCATCATTGTTACTGTTTGTGTGACGATCGTGGGAACATATTTC
rJMSF046E03+ CTGGTTTTCCTGATTCTCATCATTGTTACTGTTTGTGTGACGATCGTGGGAACATATTTC
rJMSF017J01+ CTGGTTTTCCTGATTCTCATCATTGTTACTGTTTGTGTGACGATCGTGGGAACATATTTC
rJMFF022L12+ CTGGTTTTCCTGATTCTCATCATTGTTACTGTTTGTGTGACGATCGTGGGAACATATTTC
rJMSF049A20+ CTGGTTTTCCTGATTCTCATCATTGTTACTGTTTGTGTGACGATCGTGGGAACATATTTC
rJMSF002O12+ CTGGTTTTCCTGATTCTCATCATTGTTACTGTTTGTGTGACGATCGTGGGAACATATTTC
rJMFF039H02+ CTGGTTTTCCTGATTCTCATCATTGTTACTGTTGGTGTGACGATCGTGGGAACATATTTC
____________________________________________________________
consensus CTGGTTTTCCTGATTCTCATCATTGTTACTGTTTGTGTGACGATCGTGGGAACATATTTC
. : . : . : . : . : . :
rJMSF032K14+ TTGCTAAATGCTGAGAATTATCATTGGCAGTGGACTTCATTCTTCTCAGCTGCTTCTACA
rJMSF046E03+ TTGCTAAATGCTGAGAATTATCATTGGCAGTGGACTTCATTCTTCTCAGCTGCTTCTACA
rJMSF017J01+ TTGCTAAATGCTGAGAATTATCATTGGCAGTGGACTTCATTCTTCTCAGCTGCTTCTACA
rJMFF022L12+ TTGCTAAATGCTGAGAATTATCATTGGCAGTGGACTTCATTCTTCTCAGCTGCTTCTACA
rJMSF049A20+ TTGCTAAATGCTGAGAATTATCATTGGCAGTGGACTTCATTCTTCTCAGCTGCTTCTACA
rJMSF002O12+ TTGCTAAATGCTGAGAATTATCATTGGCAGTGGACTTCATTCTTCTCAGCTGCTTCTACA
rJMFF039H02+ TTGCTAAATGCTGAGAATTATCATTGGCAGTGGACTTCATTCTTCTCAGCTGCTTCTACA
____________________________________________________________
consensus TTGCTAAATGCTGAGAATTATCATTGGCAGTGGACTTCATTCTTCTCAGCTGCTTCTACA
. : . : . : . : . : . :
rJMSF032K14+ GCTGTCTATGTATACTTGTACTCTATATATTACTACTATGTGAAGACTAAGATGTCAGGG
rJMSF046E03+ GCTGTCTATGTATACTTGTACTCTATATATTACTACTATGTGAAGACTAAGATGTCAGGG
rJMSF017J01+ GCTGTCTATGTATACTTGTACTCTATATATTACTACTATGTGAAGACTAAGATGTCAGGG
rJMFF022L12+ GCTGTCTATGTATACTTGTACTCTATATATTACTACTATGTGAAGACTAAGATGTCAGGG
rJMSF049A20+ GCTGTCTATGTATACTTGTACTCTATATATTACTACTATGTGAAGACTAAGATGTCAGGG
rJMSF002O12+ GCTGTCTATGTATACTTGTACTCTATATATTACTACTATGTGAAGACTAAGGTGTCAGGG
rJMFF039H02+ GCTGTCTATGTATACTTGTACTCTATATATTACTACTATGTGAAGACTAAGATGTCAGGG
rJMFF045E17+ TACTCTATATATTACTACTATGTGAAGACTAAGATGTCAGGG
____________________________________________________________
consensus GCTGTCTATGTATACTTGTACTCTATATATTACTACTATGTGAAGACTAAGATGTCAGGG
. : . : . : . : . : . :
rJMSF032K14+ TTCTTCCAAGTCAGCTTCTACTTTGGATACACACTGATGTTTTGTCTGGGCTTAGGAATC
rJMSF046E03+ TTCTTCCAAGTCAGCTTCTACTTTGGATACACACTGATGTTTTGTCTGGGCTTAGGAATC
rJMSF017J01+ TTCTTCCAAGTCAGCTTCTACTTTGGATACACACTGATGTTTTGTCTGGGCTTAGGAATC
rJMFF022L12+ TTCTTCCAAGTCAGCTTCTACTTTGGATACACACTGATGTTTTGTCTGGGCTTAGGAATC
rJMSF049A20+ TTCTTCCAAGTCAGCTTCTACTTTGGATACACACTGATGTTTTGTCTGGGCTTAGGAATC
rJMSF002O12+ TTCTTCCAAGTCAGCTTCTACTTNGGATACACACTGATGTTTTGTCTGGGCTTAGGAATC
rJMFF039H02+ TTCTTCCAAGTCAGCTTCTACTTTGGATACACACTGATGTTTTGTCTGGGCTTAGGAATC
rJMFF045E17+ TTCTTCCAAGTCAGCTTCTACTTGGGATACACACTGATGTTTTGTCTGGGCTTAGGAATC
____________________________________________________________
consensus TTCTTCCAAGTCAGCTTCTACTTTGGATACACACTGATGTTTTGTCTGGGCTTAGGAATC
. : . : . : . : . : . :
rJMSF032K14+ CTTTGCGGGGCTGTTGGTTTTCTTGGCTCAAATCTGTTCGTGAGGAGGATCTACCGAAAC
rJMSF046E03+ CTTTGCGGGGCTGTTGGTTTTCTTGGCTCAAATCTGTTCGTGAGGAGGATCTACCGAAAC
rJMSF017J01+ CTTTGCGGGGCTGTTGGTTTTCTTGGCTCAAATCTGTTCGTGAGGAGGATCTACCGAAAC
rJMFF022L12+ CTTTGCGGGGCTGTTGGTTTTCTTGGCTCAAATCTGTTCGTGAGGAGGATCTACCGAAAC
rJMSF049A20+ CTTTGCGGGGCTGTTGGTTTTCTTGGCTCAAATCTGTTCGTGAGGAGGATCTACCGAAAC
rJMSF002O12+ CTTTGCGGGGCTGTTGGTTTTCTTGGCTCAAATCTGTTCGTGAGGAGGATCTACCGAAAC
rJMFF039H02+ CTTTGCGGGGCTGTTGGTTTTCTTGGCTCAAATCTGTTCGTGAGGAGGATCTACCGAAAC
rJMFF045E17+ CTTTGCGGGGCTGTTGGTTTTCTTGGCTCAAATCTGTTCGTGAGGAGGATCTACCGAAAC
____________________________________________________________
consensus CTTTGCGGGGCTGTTGGTTTTCTTGGCTCAAATCTGTTCGTGAGGAGGATCTACCGAAAC
. : . : . : . : . : . :
rJMSF032K14+ ATCAAATGTGACTAATATTTGTTACGAGGTCTGATTCAGTGCTCTTATTCTGGCAACAAG
rJMSF046E03+ ATCAAATGTGACTAATATTTGTTACGAGGTCTGATTCAGTGCTCTTATTCTGGCAACAAG
rJMSF017J01+ ATCAAATGTGACTAATATTTGTTACGAGGTCTGATTCAGTGCTCTTATTCTGGCAACAAG
rJMFF022L12+ ATCAAATGTGACTAATATTTGTTACGAGGTCTGATTCAGTGCTCTTATTCTGGCAACAAG
rJMSF049A20+ ATCAAATGTGACTAATATTTGTTACGAGGTCTGATTCAGTGCTCTTATTCTGGCAACAAG
rJMSF002O12+ ATCAAATGTGACTAATATTTGTTACGAGGTCTGATTCAGTGCTCTTATTCTGGCAACAAG
rJMFF039H02+ ATCAAATGTGACTAATATTTGTTACGAGGTCTGATTCAGTGCTCTTATTCTGGCAACAAG
rJMFF045E17+ ATCAAATGTGACTAATATTTGTTACGAGGTCTGATTCAGTGCTCTTATTCTGGCAACAAG
____________________________________________________________
consensus ATCAAATGTGACTAATATTTGTTACGAGGTCTGATTCAGTGCTCTTATTCTGGCAACAAG
. : . : . : . : . : . :
rJMSF032K14+ TCAGAAAAATTCGAGAATCTATTCAAGTATTGGGCACTGGTAATGTTTCAGCTGGATGTT
rJMSF046E03+ TCAGAAAAATTCGAGAATCTATTCAAGTATTGGGCACTGGTAATGTTTCAGCTGGATGTT
rJMSF017J01+ TCAGAAAAATTCGAGAATCTATTCAAGTATTGGGCACTGGTAATGTTTCAGCTGGATGTT
rJMFF022L12+ TCAGAAAAATTCGAGAATCTATTCAAGTATTGGGCACTGGTAATGTTTCAGCTGGATGTT
rJMSF049A20+ TCAGAAAAATTCGAGAATCTATTCAAGTATTGGGCACTGGTAATGTTTCAGCTGGATGTT
rJMSF002O12+ TCAGAAAAATTCGAGAATCTATTCAAGTATTGGGCACTGGTAATGTTTCAGCTGGATGTT
rJMFF039H02+ TCAGAAAAATTCGAGAATCTATTCAAGTATTGGGCACTGGTAATGTTTCAGCTGGATGTT
rJMFF045E17+ TCAGAAAAATTCGAGAATCTATTCAAGTATTGGGCACTGGTAATGTTTCAGCTGGATGTT
____________________________________________________________
consensus TCAGAAAAATTCGAGAATCTATTCAAGTATTGGGCACTGGTAATGTTTCAGCTGGATGTT
. : . : . : . : . : . :
rJMSF032K14+ CAGATTTTGTCAGTGGTATGTACCTCTTTTGATTGTGGGGAAGGCCCGAGAATTTTCCCT
rJMSF046E03+ CAGATTTTGTCAGTGGTATGTACCTCTTTTGATTGTGGGGAAGGCCCGAGAATTTTCCCT
rJMSF017J01+ CAGATTTTGTCAGTGGTATGTACCTCTTTTGATTGTGGGGAAGGCCCGAGAATTTTCCCT
rJMFF022L12+ CAGATTTTGTCAGTGGTATGTACCTCTTTTGATTGTGGGGAAGGCCCGAGAATTTTCCCT
rJMSF049A20+ CAGATTTTGTCAGTGGTATGTACCTCTTTTGATTGTGGGGAAGGCCCGAGAATTTTCCCT
rJMSF002O12+ CAGATTTTGTCAGTGGTATGTACCTCTTTTGATTGTGGGGAAGGCCCGAGAATTTTCCCT
rJMFF039H02+ CAGATTTTGTCAGTGGTATGTACCTCTTTTGATTGTGGGGAAGGCCCGAGAATTTTCCCT
rJMFF045E17+ CAGATTTTGTCAGTGGTATGTACCTCTTTTGATTGTGGGGAAGGCCCGAGAATTTTCCCT
____________________________________________________________
consensus CAGATTTTGTCAGTGGTATGTACCTCTTTTGATTGTGGGGAAGGCCCGAGAATTTTCCCT
. : . : . : . : . : . :
rJMSF032K14+ CTTCCCCAGGATGTAAAAACATAATTTTCGTAGTTTAGAATGCAGAGATTACTGTTATTA
rJMSF046E03+ CTTCCCCAGGATGTAAAAACATAATTTTCGTAGTTTAGAATGCAGAGATTACTGTTATCA
rJMSF017J01+ CTTCCCCAGGATGTAAAAACATAATTTTCGTAGTTTAGAATGCAGAGATTACTGTTATTA
rJMFF022L12+ CTTCCCCAGGATGTAAAAACATAATTTTCGTAGTTTAGAATGCAGAGATTACTGTTATTA
rJMSF049A20+ CTTCCCCAGGATGTAAAAACATAATTTTCGTAGTTTAGAATGCAGAGATTACTGTTATTA
rJMSF002O12+ CTTCCCCAGGATGTAAAAACATAATTTTCGTAGTTTAGAATGCAGAGATTACTGTTATTA
rJMFF039H02+ CTTCCCCAGGATGTAAAAACATAATTTTCGTAGTTTAGAATGCAGAGATTACTGTTATTA
rJMFF045E17+ CTTCCCCAGGATGTAAAAACATAATTTTCGTAGTTTAGAATGCAGAGATTACTGTTATTA
____________________________________________________________
consensus CTTCCCCAGGATGTAAAAACATAATTTTCGTAGTTTAGAATGCAGAGATTACTGTTATTA
. : . : . : . : . : . :
rJMSF032K14+ TCTGA
rJMSF046E03+ TCTGAGGCT
rJMSF017J01+ TCTGAGGCTAGCACAATACCAGCTTCACTTGGCATGTAGTATATCAATAGCCTCGCCTGC
rJMFF022L12+ TCTGAGGCTAGCACAATACCAGCTTCACTTGGCATGTAGTATATCAATAGCCTCGCCTGC
rJMSF049A20+ TCTGAGGCTAGCACAATACCAGCTTCACTTGGCATGTAGTATATCAATAGCCTCGCCTGC
rJMSF002O12+ TCTGAGGCTAGCACAATACCAGCTTCACTTGGCATGTAGTATATCAATAGCCTCGCCTGC
rJMFF039H02+ TCTGAGGCTAGCACAATACCAGCTTCACTTGGCATGTAGTATATCAATAGCCTCGCCTGC
rJMFF045E17+ TCTGAGGCTAGCACAATACCAGCTTCACTTGGCATGTAGTATATCAATAGCCTCGCCTGC
____________________________________________________________
consensus TCTGAGGCTAGCACAATACCAGCTTCACTTGGCATGTAGTATATCAATAGCCTCGCCTGC
. : . : . : . : . : . :
rJMSF017J01+ TCTACACAATGT
rJMFF022L12+ TCTACACAATGTTGTACTCTAACAGAATTGCTACCTCCTTTTTGTTTTCTATACCGATTC
rJMSF049A20+ TCTACACAATGTTGTACTCTAACAGAATTGCTACTTCCTTTT
rJMSF002O12+ TCTACACAATGTTGTACTCTAACAGAATTGCTACTTCCTTTT
rJMFF039H02+ TCTACACAATGTTGTACTCTAACAGAATTGCTACCTCCTTTTTGTTTTCTATACCGATTC
rJMFF045E17+ TCTACACAATGTTGTACTCTAACAGAATTGCTACCTCCTTTTTGTTTTCTATACCGATTC
____________________________________________________________
consensus TCTACACAATGTTGTACTCTAACAGAATTGCTACCTCCTTTTTGTTTTCTATACCGATTC
. : . : . : . : . : . :
rJMFF022L12+ CCATG
rJMFF039H02+ CCATGCAAT
rJMFF045E17+ CCATGCAATTAGAAAGTTTTTTGGATCAGCXXXXXXXXXXXXXXXXXXXCTCTCCAGGGT
____________________________________________________________
consensus CCATGCAATTAGAAAGTTTTTTGGATCAGCNNNNNNNNNNNNNNNNNNNCTCTCCAGGGT