Contig 011177:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044D06Sequence622013489 (4)gb|EYU23114.1|2e-128hypothetical protein MIMGU_mgv1a004585mg [Erythranthe guttata]646011177 (4)
JMFF045C14Sequence621013489 (4)gb|EYU23115.1|2e-130hypothetical protein MIMGU_mgv1a004585mg [Erythranthe guttata]658011177 (4)
JMSF029L06Sequence661013489 (4)gb|EYU23115.1|3e-141hypothetical protein MIMGU_mgv1a004585mg [Erythranthe guttata]738011177 (4)dbj|BAF95167.1|2e-38similar to putative preRNA processing ribonucleoprotein [Ipomoea nil]
JMSF039E04Sequence675013489 (4)gb|EYU23115.1|1e-142hypothetical protein MIMGU_mgv1a004585mg [Erythranthe guttata]852011177 (4)dbj|BAF95167.1|9e-79similar to putative preRNA processing ribonucleoprotein [Ipomoea nil]

Alignment

This contig is upended


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rJMSF039E04+                  TGCTGGTAGTCTTACCAAACCTTGCCAAATGCCCTTCTTCTACCCTTCAGAT
                      ____________________________________________________________
consensus                     TGCTGGTAGTCTTACCAAACCTTGCCAAATGCCCTTCTTCTACCCTTCAGAT
 
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rJMSF039E04+          ACTCGGTGCTGAGAAGGCACTCTTTAGGGCCTTGAAGACCAAAGGGAACACACCCAAATA
                      ____________________________________________________________
consensus             ACTCGGTGCTGAGAAGGCACTCTTTAGGGCCTTGAAGACCAAAGGGAACACACCCAAATA
 
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rJMSF039E04+          TGGTCTTATATTTCATTCTTCTTTCATAGGCCGTGCTTCTGCTAAAAACAAAGGGAGAAT
                      ____________________________________________________________
consensus             TGGTCTTATATTTCATTCTTCTTTCATAGGCCGTGCTTCTGCTAAAAACAAAGGGAGAAT
 
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rJMSF029L06+                                TGCTCTATTGCTTCGCGCCTGGACTGTTTCTTAGATAA
rJMSF039E04+          GGCACGATATCTTGCAAACAAATGCTCTATTGCTTCGCGCTTGGACTGTTTCTTAGATAA
                      ____________________________________________________________
consensus             GGCACGATATCTTGCAAACAAATGCTCTATTGCTTCGCGCTTGGACTGTTTCTTAGATAA
 
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rJMSF029L06+          CAATACTACACCCTTTGGAGAGAAACTCCGTGAACAAGTTGAGGAGCGGCTTGATTTTTA
rJMSF039E04+          CAATACTACAACCTTTGGAGAGAAACTCCGTGAACAAGTTGAGGAGCGGCTTGATTTTTA
                      ____________________________________________________________
consensus             CAATACTACACCCTTTGGAGAGAAACTCCGTGAACAAGTTGAGGAGCGGCTTGATTTTTA
 
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rJMSF029L06+          TGATAAGGGTGTTGCACCGCGCAAAAACATAGATGTGATGAAAGTTGCTATAGAAAATTT
rJMSF039E04+          TGATAAGGGCGTTGCACCGCGCAAAAACATAGATGTGATGAAAGTTGCTATAGAAAATTT
                      ____________________________________________________________
consensus             TGATAAGGGTGTTGCACCGCGCAAAAACATAGATGTGATGAAAGTTGCTATAGAAAATTT
 
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rJMSF029L06+          CCAAAGTAAAGATGCCGATACTTCTATGGATGTGGACACAACACCTAGCAAGTCGTCCAC
rJMSF039E04+          CCAAAGTAAAGATGCCGATACTTCTATGGATGTGGACACAACACCTAGCAAGTCGTCCAC
rJMFF044D06+            AAAGTAAAGATGCCGATACTTCTATGGATGTGGACACAACACCTAGCAAGTCGTCCAC
rJMFF045C14+            AAAGTAAAGATGCCGATACTTCTATGGATGTGGACACAACACCTAGCAAGTCGTCCAC
                      ____________________________________________________________
consensus             CCAAAGTAAAGATGCCGATACTTCTATGGATGTGGACACAACACCTAGCAAGTCGTCCAC
 
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rJMSF029L06+          AAAGAAAAGCAAGAAAAAGAAATCCAAGGCTGTGGAGGATAGTGAACCCATGGAAGAAGA
rJMSF039E04+          AAAGAAAAGCAAGAAAAAGAAATCCAAGGCTGTGGAGGATAGTGAACCCATGGAAGAAGA
rJMFF044D06+          AAAGAAAAGCAAGAAAAAGAAATCCAAGGCTGTGGAGGATAGTGAACCCATGGAAGAAGA
rJMFF045C14+          AAAGAAAAGCAAGAAAAAGAAATCCAAGGCTGTGGAGGATAGTGAACCCATGGAAGAAGA
                      ____________________________________________________________
consensus             AAAGAAAAGCAAGAAAAAGAAATCCAAGGCTGTGGAGGATAGTGAACCCATGGAAGAAGA
 
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rJMSF029L06+          TAAACTTGGTAATACAAATGGTGATGCATCTGAAGAACCAAAGAAGAAGAAAAAGGAGAA
rJMSF039E04+          TAAACTTGGTAATACAAATGGTGATGCATCTGAAGAACCAAAGAAGAAGAAAAAGGAGAA
rJMFF044D06+          TAAACTTGGTAATACAAATGGTGATGCATCTGAAGAACCAAAGAAGAAGAAAAAGGAGAA
rJMFF045C14+          TAAACTTGGTAATACAAATGGTGATGCATCTGAAGAACCAAAGAAGAAGAAAAAGGAGAA
                      ____________________________________________________________
consensus             TAAACTTGGTAATACAAATGGTGATGCATCTGAAGAACCAAAGAAGAAGAAAAAGGAGAA
 
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rJMSF029L06+          GCGAAAAGCAGAAGAGGAGCAAAACAACACAGGTGCAGAAAATGCAAATGGTATGAATGG
rJMSF039E04+          GCGAAAAGCAGAAGAGGAGCAAAACAACACAGGTGCAGAAAATGCAAATGGTATGAATGG
rJMFF044D06+          GCGAAAAGCAGAAGAGGAGCAAAACAACACAGGTGCAGAAAATGCAAATGGTATGAATGG
rJMFF045C14+          GCGAAAAGCAGAAGAGGAGCAAAACAACACAGGTGCAGAAAATGCAAATGGTATGAATGG
                      ____________________________________________________________
consensus             GCGAAAAGCAGAAGAGGAGCAAAACAACACAGGTGCAGAAAATGCAAATGGTATGAATGG
 
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rJMSF029L06+          AACCGGAGATGAGGATGGAAGTACAAAAAAGAAGAAAAAAAAGAGTAAGAAAGAGGGAGA
rJMSF039E04+          AACCGGAGATGAGGATGGAAGTACAAAAAAGAAGAAAAAAAAGAGTAAGAAAGAGGGAGA
rJMFF044D06+          AACCGGAGATGAGGATGGAAGTACAAAAAAGAAGAAAAAAAAGAGTAAGAAAGAGGGAGA
rJMFF045C14+          AACCGGAGATGAGGATGGAAGTACAAAAAAGAAGAAAAAAAAGAGTAAGAAAGAGGGAGA
                      ____________________________________________________________
consensus             AACCGGAGATGAGGATGGAAGTACAAAAAAGAAGAAAAAAAAGAGTAAGAAAGAGGGAGA
 
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rJMSF029L06+          GGAAGTTGAAACAGCTACTGAAGGTAAAAGGAAAAAGAAAAAGTCAAAGGCTGAAAATGA
rJMSF039E04+          GGAAGTTGAAACAGCTACTGAAGGTAAAAGGAAAAAGAAAAAGTCAAAGGCTGAAAATGA
rJMFF044D06+          GGAAGTTGAAACAGCTACTGAAGGTAAAAGGAAAAAGAAAAAGTCAAAGGCTGAAAATGA
rJMFF045C14+          GGAAGTTGAAACAGCTACTGAAGGTAAAAGGAAAAAGAAAAAGTCAAAGGCTGAAAATGA
                      ____________________________________________________________
consensus             GGAAGTTGAAACAGCTACTGAAGGTAAAAGGAAAAAGAAAAAGTCAAAGGCTGAAAATGA
 
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rJMSF029L06+          AGA                                                         
rJMSF039E04+          AGAATGATACTGTGAGCTACATCTTAAATTTTGAAAGGCCATGCCTGTATTTCATATAAT
rJMFF044D06+          AGAATGATACTGTGAGCTACATCTTAAATTTTGAAAGGCCATGCCTGTATTTCATATAAT
rJMFF045C14+          AGAATGATACTGTGAGCTACATCTTAAATTTTGAAAGGCCATGCCTGTATTTCATATAAT
                      ____________________________________________________________
consensus             AGAATGATACTGTGAGCTACATCTTAAATTTTGAAAGGCCATGCCTGTATTTCATATAAT
 
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rJMSF039E04+          TTTTCTCTTTGTTCTGTGGTATTATTATGATATTTTATCTCTTTACTTTATTCTACCC  
rJMFF044D06+          TTTTCTCTTTGTTCTGTGGTATTATTATGATATTTTATCTCTTTACTTTATTCTACCCAA
rJMFF045C14+          TTTTCTCTTTGTTCTGTGGTATTATTATGATATTTTATCTCTTTACTTTATTCTACCCAA
                      ____________________________________________________________
consensus             TTTTCTCTTTGTTCTGTGGTATTATTATGATATTTTATCTCTTTACTTTATTCTACCCAA
 
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rJMFF044D06+          ATCTATATCATGTTTGCTAGAGACCCCTAATCAAATGAGTTTGACTGCTTAACTATGTTT
rJMFF045C14+          ATCTATATCATGTTTGCTAGAGACCCCTAATCAAATGAGTTTGACTGCTTAACTATGTTT
                      ____________________________________________________________
consensus             ATCTATATCATGTTTGCTAGAGACCCCTAATCAAATGAGTTTGACTGCTTAACTATGTTT
 
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rJMFF044D06+          TTAATTCTTTGTTTCATCTGTAATGGTGATATATTGCACTGTAATCCAACTGCTATCTTA
rJMFF045C14+          TTAATTCTTTGTTTCATCTGTAATGGTGATATATTGCACTGTAATCCAACTGCTATCTTA
                      ____________________________________________________________
consensus             TTAATTCTTTGTTTCATCTGTAATGGTGATATATTGCACTGTAATCCAACTGCTATCTTA
 
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rJMFF044D06+          AAGCTTTC-TTTGAACCCCAAAAAAAAAAAAAAAACTCTCCAGGGT              
rJMFF045C14+          AAGCTTTCTTTTGAACCCCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             AAGCTTTCTTTTGAACCCCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG