Contig 011173:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044I17Sequence628011173 (6)ref|XP_006347268.1|4e-99PREDICTED: protein argonaute 4-like isoform X1 [Solanum tuberosum] ref|XP_006347634011173 (6)ref|NP_001266156.1|3e-44uncharacterized protein LOC101256023 [Solanum lycopersicum] gb|AFV15381.1| AGO4A
JMFN008E17Sequence470011173 (6)ref|NP_001266156.1|1e-16uncharacterized protein LOC101256023 [Solanum lycopersicum] gb|AFV15381.1| AGO4A
JMFS026H01Sequence627011173 (6)ref|XP_002527764.1|5e-49eukaryotic translation initiation factor 2c, putative [Ricinus communis] gb|EEF
JMSF012B06Sequence359004840 (63)ref|XP_009591976.1|1e-26PREDICTED: protein argonaute 4 [Nicotiana tomentosiformis]771011173 (6)ref|XP_006347268.1|2e-92PREDICTED: protein argonaute 4-like isoform X1 [Solanum tuberosum] ref|XP_006347
JMSF021K09Sequence629004840 (63)ref|XP_009591976.1|4e-70PREDICTED: protein argonaute 4 [Nicotiana tomentosiformis]807011173 (6)ref|XP_003601297.1|5e-103Protein argonaute 4A [Medicago truncatula]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF044I17- GTCAGTGAATCCCAATT
rJMSF021K09+ AAAAGGAAGCCTGATCNAATCATAATCTTCAGGGATGGTGTCAGTGAATCCCAATT
rJMSF012B06+ GTCAGNGAATCCCNATT
                      ____________________________________________________________
consensus AAAAGGAAGCCTGATCNAATCATAATCTTCAGGGATGGTGTCAGTGAATCCCAATT
 
. : . : . : . : . : . :
JMFF044I17- CAATCAAGTACTGAATATTGAGCTTGATCAGATCATTGAGGCTTGCAAATTTCTTGACGA
rJMSF021K09+ CAATCAAGTACTGAATATTGAGCTTGATCAGATCATTGAGGCTTGCAAATTTCTNGACGA
rJMSF012B06+ CAATCAAGTACTGAATATTGAGCTTGATCAGATCATTGAGGCTNGCAAATTTCTTGACGA
                      ____________________________________________________________
consensus CAATCAAGTACTGAATATTGAGCTTGATCAGATCATTGAGGCTTGCAAATTTCTTGACGA
 
. : . : . : . : . : . :
JMFF044I17- GAAATGGTCACCCAAGTTTGTGGTTATTATTGCTCAGAAGAATCATCATACTAAGTTCTT
rJMSF021K09+ GAAATGGTCACCCAAGTTTGTGGTTATTATTGCTCAGAAGAATCATCATACTAAGTTCTT
rJMSF012B06+ GAAATGGTCACCCAAGTTTGTGGTTATTATTGCTCAGAAGAATCATCATACTAAGTTCTT
                      ____________________________________________________________
consensus GAAATGGTCACCCAAGTTTGTGGTTATTATTGCTCAGAAGAATCATCATACTAAGTTCTT
 
. : . : . : . : . : . :
JMFF044I17- TCAGTCTTCGTCTCCTGATAATGTTCCACCAGGGACAATCATAGACAATAAAGTTTGCCA
rJMSF021K09+ TCAGTCTTCGTCTCCTGATAATGTTCCACCAGGGACAATCATAGACAATAAAGTTTGCCA
rJMSF012B06+ TCAGTCTTCGTCTCNTGATAATGTTCCACCAGGGACAATCATAGACAATAAAGTTTGCCA
                      ____________________________________________________________
consensus TCAGTCTTCGTCTCCTGATAATGTTCCACCAGGGACAATCATAGACAATAAAGTTTGCCA
 
. : . : . : . : . : . :
JMFF044I17- TCCTAGGAACAATGACTTCTACTTGTGTGCCCATGCAGGAATGATTGGGACCACAAGACC
rJMSF021K09+ TCCTAGGAACAATGACTTCTACTTGTGTGCCCATGCAGGAATGATTGGGACCACAAGACC
rJMSF012B06+ TCCTAGGAACAATGACTTCTACTTGTGTGCCCATGCAGGAATGATTGGGACCACAAGACC
JMFS026H01- CTAGGAACAATGACTTCTACTTGTGTGCCCATGCAGGAATGATTGGGACCACAAGACC
rJMFF044I17+ GTGCCCATGCAGGAATGATTGGGACCACAAGACC
                      ____________________________________________________________
consensus TCCTAGGAACAATGACTTCTACTTGTGTGCCCATGCAGGAATGATTGGGACCACAAGACC
 
. : . : . : . : . : . :
JMFF044I17- AACTCATTACCATGTTCTTCTGGATGAGGTTGGGTTTTCTGCAGATGAGCTACAAGAACT
rJMSF021K09+ AACTCATTACCATGTTTTTCTGGATGAGGTNGGGTNTTCTGCAGATGAGCTACAAGAACT
rJMSF012B06+ AACTCATTACCATGTTCTTCTGGATGAGGTTGGGTTTTCTGCAGATGAGCTACAAGAACT
JMFS026H01- AACTCATTACCATGTTCTTCTGGATGAGGTTGGGTTTTCTGCAGATGAGCTACAAGAACT
rJMFF044I17+ AACTCATTACCATGTTCTTCTGGATGAGGTTGGGTTTTCTGCAGATGAGCTACAAGAACT
                      ____________________________________________________________
consensus AACTCATTACCATGTTCTTCTGGATGAGGTTGGGTTTTCTGCAGATGAGCTACAAGAACT
 
. : . : . : . : . : . :
JMFF044I17- TGTGCACAACTTATCCTATGTGTACCAACGAAGCACCACTGCCATATCAGTTGTTGCCCC
rJMSF021K09+ TGTGCACAACTTATCCTATGTGTACCAACGAAGCACCACTGCCATATCAGTTGTTGCCCC
rJMSF012B06+ TGTGCACAACTTATCCTATGTGTACCAACGAAGCACCACTGCCATATCAGTTGTTGCCCC
JMFN008E17- CGAAGCACCACTGCCATATCAGTTGTTGCCCC
JMFS026H01- TGTGCACAACTTATCCTATGTGTACCAACGAAGCACCACTGCCATATCAGTTGTTGCCCC
rJMFF044I17+ TGTGCACAACTTATCCTATGTGTACCAACGAAGCACCACTGCCATATCAGTTGTTGCCCC
                      ____________________________________________________________
consensus TGTGCACAACTTATCCTATGTGTACCAACGAAGCACCACTGCCATATCAGTTGTTGCCCC
 
. : . : . : . : . : . :
JMFF044I17- AATATGCTATGCTCATTTGGCTGCGACCCAGTTGGGACAATGGATGAAATTTGAGGGCTC
rJMSF021K09+ AATATGCTATGCTCATTTGGNTGCGACCCAGTTGGGACAATGGATGAAATTTGAGGGCTC
rJMSF012B06+ AATATGCTATGCTCATTTGGCTGCGACCCAGTTGGGACAATGGATGAAATTTGAGGGCTC
JMFN008E17- AATATGCTATGCTCATTTGGCTGCGACCCAGTTGGGACAATGGATGAAATTTGAGGGCTC
JMFS026H01- AATATGCTATGCTCATTTGGCTGCGACCCAGTTGGGACAATGGATGAAATTTGAGGGCTC
rJMFF044I17+ AATATGCTATGCTCATTTGGCTGCGACCCAGTTGGGACAATGGATGAAATTTGAGGGCTC
                      ____________________________________________________________
consensus AATATGCTATGCTCATTTGGCTGCGACCCAGTTGGGACAATGGATGAAATTTGAGGGCTC
 
. : . : . : . : . : . :
JMFF044I17- ATCTGACACATCTTCAAACCCCGGTGGTGGTGGTGGGAAGAATGGTGGTCCAGCTCCTGT
rJMSF021K09+ ATCTGACACATCTTCAAACCCCGGTGGTGGTGGTGGGAAGAATGGTGGTCCAGCTCCTGT
rJMSF012B06+ ATCTGACACATCTTCAAACCCCGGTGGTGGTGGTGGGAAGAATGGTGGTCCAGCTCCTGT
JMFN008E17- ATCTGACACATCTTCAAACCCCGGTGGTGGTGGTGGGAAGAATGGTGGTCCAGCTCCTGT
JMFS026H01- ATCTGACACATCTTCAAACCCCGGTGGTGGTGGTGGGAAGAATGGTGGTCCAGCTCCTGT
rJMFF044I17+ ATCTGACACATCTTCAAACCCCGGTGGTGGTGGTGGGAAGAATGGTGGTCCAGCTCCTGT
                      ____________________________________________________________
consensus ATCTGACACATCTTCAAACCCCGGTGGTGGTGGTGGGAAGAATGGTGGTCCAGCTCCTGT
 
. : . : . : . : . : . :
JMFF044I17- TCCTCAGTTGCCTAAGCTGGAGGAGAAAGTGTCCAGTTCAATGTTCTTCTGTT-AAAAGG
rJMSF021K09+ TCNTCAGTTGCTTAAGCTGGAGGAGAAAGTGTCCAGTTCAATGTTCTTCTGTTAAAAAGG
rJMSF012B06+ TCCTCAGTTGCCTAAGCTGGAGGAGAAAGTGTCCAGTTCAATGTTCTTCTGTTAAAAAGG
JMFN008E17- TCCTCAGTTGCCTAAGCTGGAGGAGAAAGTGTCCAGTTCAATGTTCTTCTGTTAAAAAGG
JMFS026H01- TCCTCAGTTGCCTAAGCTGGAGGAGAAAGTGTCCAGTTCAATGTTCTTCTGTTAAAAAGG
rJMFF044I17+ TCCTCAGTTGCCTAAGCTGGAGGAGAAAGTGTCCAGTTCAATGTTCTTCTGTTAAAAAGG
                      ____________________________________________________________
consensus TCCTCAGTTGCCTAAGCTGGAGGAGAAAGTGTCCAGTTCAATGTTCTTCTGTTAAAAAGG
 
. : . : . : . : . : . :
JMFF044I17- CTGCGTGCCTGCTTGTTACAGTGAATGGATTGTAAATATAGTTTCAAGTATGGGTTATTA
rJMSF021K09+ CTGCGTGCCTGCTTGTTACAGTGAATGGATTGTAAATATAGTTTCAAGTATGGGTTATTA
rJMSF012B06+ CTGCGTGCCTGCTTGTTACAGTGAATGGATTGTAAATATAGTTTCAAGTATGGGTTATTA
JMFN008E17- CTGCGTGCCTGCTTGTTACAGTGAATGGATTGTAAATATAGTTTCAAGTATGGGTTATTA
JMFS026H01- CTGCGTGCCTGCTTGTTACAGTGAATGGATTGTAAATATAGTTTCAAGTATGGGTTATTA
rJMFF044I17+ CTGCGTGCCTGCTTGTTACAGTGAATGGATTGTAAATATAGTTTCAAGTATGGGTTATTA
                      ____________________________________________________________
consensus CTGCGTGCCTGCTTGTTACAGTGAATGGATTGTAAATATAGTTTCAAGTATGGGTTATTA
 
. : . : . : . : . : . :
JMFF044I17- TGCGGT
rJMSF021K09+ TGCGGTTGACCAGACCAGATCAGACCAAGTTTAAGACTGTTTTAGGCTGTACTGCTCTTT
rJMSF012B06+ TGCGGTTGACCAGACCAGATCAGACCAAGTTTAAGACTGTTTTAGGCTGTACTGCTCTTT
JMFN008E17- TGCGGTTGACCAGACCAGATCAGACCAAGTTTAAGACTGTTTTAGGCTGTACTGCTCTTT
JMFS026H01- TGCGGTTGACCAGACCAGATCAGACCAAGTTTAAGACTGTTTTAGGCTGTACTGCTCTTT
rJMFF044I17+ TGCGGTTGACCAGACCAGATCAGACCAAGTTTAAGACTGTTTTAGGCTGTACTGCTCTTT
                      ____________________________________________________________
consensus TGCGGTTGACCAGACCAGATCAGACCAAGTTTAAGACTGTTTTAGGCTGTACTGCTCTTT
 
. : . : . : . : . : . :
rJMSF021K09+ AACTTTTTANGGTTGTCCCTCCCCTCCCATGCAAATGTTTTGGAAGACATTATTTGTTGT
rJMSF012B06+ AACTTTTTATGGTTGTCCCTCCCCTCCCATGCAAATGTTTTGGAAGACATTATTTGTTGT
JMFN008E17- AACTTTTTATGGTTGTCCCTCCCCTCCCATGCAAATGTTTTGGAAGACATTATTTGTTGT
JMFS026H01- AACTTTTTATGGTTGTCCCTCCCCTCCCATGCAAATGTTTTGGAAGACATTATTTGTTGT
rJMFF044I17+ AACTTTTTATGGTTGTCCCTCCCCTCCCATGCAAATGTTTTGGAAGACATTATTTGTTGT
                      ____________________________________________________________
consensus AACTTTTTATGGTTGTCCCTCCCCTCCCATGCAAATGTTTTGGAAGACATTATTTGTTGT
 
. : . : . : . : . : . :
rJMSF021K09+ ATGGATGGGGAGGGGGAGTATGTGACTCCAC
rJMSF012B06+ ATGGATGGGGAGGGGGAGTATGTGACTCCACT
JMFN008E17- ATGGATGGGGAGGGGGAGTATGTGACTCCACTTAACTTGCTGTCGGAGTGTGGTTTATTT
JMFS026H01- ATGGATGGGGAGGGGGAGTATGTGACTCCACTTAACTTGCTGTCGGAGTGTGGTTTATTT
rJMFF044I17+ ATGGATGGGGAGGGGGAGTATGTGACTCCACTTAACTTGCTGTCGGAGTGTGGTTTATTT
                      ____________________________________________________________
consensus ATGGATGGGGAGGGGGAGTATGTGACTCCACTTAACTTGCTGTCGGAGTGTGGTTTATTT
 
. : . : . : . : . : . :
JMFN008E17- TAAGGACTTGGTTCTACC
JMFS026H01- TAAGGACTTGGTTCTACCTAA
rJMFF044I17+ TAAGGACTTGGTTCTACCTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus TAAGGACTTGGTTCTACCTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG