| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF044H13 | Sequence | 643 | 000464 (9) | ref|XP_006349369.1| | 4e-52 | PREDICTED: potassium channel AKT2/3-like [Solanum tuberosum] | 632 | 011172 (7) | ref|XP_004230485.1| | 1e-37 | PREDICTED: potassium channel AKT2/3-like [Solanum lycopersicum] |
| JMFS031D08 | Sequence | 407 | 011172 (7) | ref|XP_009616703.1| | 7e-30 | PREDICTED: potassium channel AKT2/3-like [Nicotiana tomentosiformis] | |||||
| JMFS048B06 | Sequence | 394 | 011172 (7) | ref|XP_009616703.1| | 8e-30 | PREDICTED: potassium channel AKT2/3-like [Nicotiana tomentosiformis] | |||||
| JMSF009J13 | Sequence | 411 | 000464 (9) | ref|XP_006349369.1| | 5e-18 | PREDICTED: potassium channel AKT2/3-like [Solanum tuberosum] | 669 | 011172 (7) | emb|CAA70947.1| | 1e-74 | putative inward rectifying potassium channel [Solanum tuberosum] |
| JMSF032A15 | Sequence | 708 | 000832 (37) | dbj|BAF46301.1| | 5e-81 | putative ripening protein [Ipomoea nil] | 670 | 011172 (7) | emb|CAA70947.1| | 6e-73 | putative inward rectifying potassium channel [Solanum tuberosum] |
| JMSF036H12 | Sequence | 611 | 000464 (9) | ref|XP_006349369.1| | 4e-40 | PREDICTED: potassium channel AKT2/3-like [Solanum tuberosum] | 848 | 011172 (7) | ref|XP_009795716.1| | 1e-78 | PREDICTED: potassium channel AKT2/3-like [Nicotiana sylvestris] |
| JMSF042F23 | Sequence | 243 | 000464 (9) | 755 | 011172 (7) | emb|CAA70947.1| | 2e-93 | putative inward rectifying potassium channel [Solanum tuberosum] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF036H12+ TGCAGCCTCAAANGGCCTGNAGAGTGTGTTATNGTG
____________________________________________________________
consensus TGCAGCCTCAAANGGCCTGNAGAGTGTGTTATNGTG
. : . : . : . : . : . :
rJMSF042F23+ AACACAGCACTTTGGG
rJMSF036H12+ CTCCTTAAACATGGCTGTAACATNCNTTGAAAGATATGGAAGGCAACACAGCACTTTGGG
____________________________________________________________
consensus CTCCTTAAACATGGCTGTAACATNCNTTGAAAGATATGGAAGGCAACACAGCACTTTGGG
. : . : . : . : . : . :
rJMSF042F23+ ATGCCATAGCAGCAAAAGAGCATTCCATATTCAGCATTCTGTACCACTGGGCTTCCATCT
rJMSF036H12+ ATGCCATAGCAGCAAAAGAGCATTCCATATTCAGCATTCTGTACCACTGGGCTTCCATCT
____________________________________________________________
consensus ATGCCATAGCAGCAAAAGAGCATTCCATATTCAGCATTCTGTACCACTGGGCTTCCATCT
. : . : . : . : . : . :
rJMSF009J13+ TACGTGGCGGGCGATCTCCTGTGCAAAGCAGCAAAGATGAACGATTCATCCG
rJMSF042F23+ CTGACCCNTACGTGGCGGGCGATCTCCTGTGCAAAGCAGCAAAGATGAACGATTCATCCG
rJMSF032A15+ TACGTGGCGGGCGATCTCCTGTGCAAAGCAGCAAAGATGAACGATTCATCCG
rJMSF036H12+ CTGACCCCTACGTGGCGGGCGATCTCCTGTGCAAAGCAGCAAAGATGAACGATTCATCCG
____________________________________________________________
consensus CTGACCCCTACGTGGCGGGCGATCTCCTGTGCAAAGCAGCAAAGATGAACGATTCATCCG
. : . : . : . : . : . :
rJMSF009J13+ TAATGCAGGAGCTTCTGAAGCACGGGCTGCACGTGGACTCAAAGGACCGCCATGGATCCA
rJMSF042F23+ TAATGCAGGAGCTTCTGAAGCACGGGCTGCACGTGGACTCAAAGGACCGCCATGGATCCA
rJMSF032A15+ TAATGCAGGAGCTTCTGAAGCACGGGCTGCACGTGGANTCAAAGGACCGCCATGGATCCA
rJMSF036H12+ TAATGCAGGAGCTTCTGAAGCACGGGCTGCACGTGGACTCAAAGGACCGCCATGGATCCA
____________________________________________________________
consensus TAATGCAGGAGCTTCTGAAGCACGGGCTGCACGTGGACTCAAAGGACCGCCATGGATCCA
. : . : . : . : . : . :
rJMSF009J13+ CCGCCATTCAAGCCGCGATGGAGGAAAACCAGGCAGACATGATAAAGCTTCTGGTGATGA
rJMSF042F23+ CCGCCATTCAAGCCGCGATGGAGGAAAACCAGGCAGACATGATAAAGCTTCTGGTGATGA
rJMSF032A15+ CCGCCATTCAAGCCGCGATGGAGGAAAACCAGGCAGACATGATAAAGCTTCTGGTGATGA
rJMSF036H12+ CCGCCATTCAAGCCGCGATGGAGGAAAACCAGGCAGACATGATAAAGCTTCTGGTGATGA
____________________________________________________________
consensus CCGCCATTCAAGCCGCGATGGAGGAAAACCAGGCAGACATGATAAAGCTTCTGGTGATGA
. : . : . : . : . : . :
rJMSF009J13+ ATGGTGCAGAGATTGATGATGCTGTTAAGCTCAACTTGGCACCACTAGACTTAACCGAAG
rJMSF042F23+ ATGGTGCAGAGATTGATGATGCTGTTAAGCTCAACTTGGCACCACTAGACTTAACCGAAG
rJMSF032A15+ ATGGTGCAGAGATTGATGATGCTGTTAAGCTCAACTTGGCACCACTAGACTTAACCGAAG
rJMSF036H12+ ATGGTGCAGAGATTGATGATGCTGTTAAGCTCAACTTGGCACCACTAGACTTAACCGAAG
rJMFF044H13+ AGCTCAACTTGGCACCACTAGACTTAACCGAAG
____________________________________________________________
consensus ATGGTGCAGAGATTGATGATGCTGTTAAGCTCAACTTGGCACCACTAGACTTAACCGAAG
. : . : . : . : . : . :
rJMSF009J13+ TTCTGCAAAAACGAGAACTCGGGCACAGGATTGCAATGCCTAACACAATTCTCCATGAAG
rJMSF042F23+ TTCTGCAAAAACGAGAACTCGGGCACAGGATTGCAATGCCTAACACAATTCTCCATGAAG
rJMSF032A15+ TTNTGCAAAAACGAGAACTCGGGCACAGGATTGCAATGCCTAACACAATTCTCCATGAAG
rJMSF036H12+ TTCTGCAAAAACGAGAACTCGGGCACAGGATTGCAATGCCTAACACAATTCTCCATGAAG
rJMFF044H13+ TTCTGCAAAAACGAGAACTCGGGCACAGGATTGCAATGCCTAACACAATTCTCCATGAAG
____________________________________________________________
consensus TTCTGCAAAAACGAGAACTCGGGCACAGGATTGCAATGCCTAACACAATTCTCCATGAAG
. : . : . : . : . : . :
rJMSF009J13+ CAGCCTCAAAGTGGGCTAAGGATGATCACCAGAACAGCAGTTCTATGCCCCAGCAGTGCT
rJMSF042F23+ CAGCCTCAAAGTGGGCTAAGGATGATCACCAGAACAGCAGTTCTATGCCCCAGCAGTGCT
rJMSF032A15+ CAGCCTCAAAGTGGGCTAAGGATGATCACCAGAACAGCAGTTCTATGCCCCAGCAGTGCT
rJMSF036H12+ CAGCCTCAAAGTGGGCTAAGGATGATCACCAGAACAGCAGTTCTATGCCCCAGCAGTGCT
JMFS048B06- AGCAGTTCTATGCCCCAGCAGTGCT
JMFS031D08- TGATCACCAGAACAGCAGTTCTATGCCCCAGCAGTGCT
rJMFF044H13+ CAGCCTCAAAGTGGGCTAAGGATGATCACCAGAACAGCAGTTTTATGCCCCAGCAGTGCT
____________________________________________________________
consensus CAGCCTCAAAGTGGGCTAAGGATGATCACCAGAACAGCAGTTCTATGCCCCAGCAGTGCT
. : . : . : . : . : . :
rJMSF009J13+ CTATCAGAGTTAGCATTTACAGAGGCCACCCTGCAACGAGGCGAGAAACGCAATGCCCCG
rJMSF042F23+ CTATCAGAGTTAGCATTTACAGAGGCCACCCTGCAACGAGGCGAGAAACGCAATGCCCCG
rJMSF032A15+ CTATCAGAGTTAGCATTTACAGAGGCCACCCTGCAACGAGGCGAGAAACGCAATGCCCCG
rJMSF036H12+ CTATCAGAGTTAGCATTTACAGAGGCCACCCTGCAACGAGGCGA-AAACGCAATGCCCCG
JMFS048B06- CTATCAGAGTTAGCATTTACAGAGGCCACCCTGCAACGAGGCGAGAAACGCANTGCCCCG
JMFS031D08- CTATCAGAGTTAGCATTTACAGAGGCCACCCTGCAACGAGGCGAGAAACGCAATGCCCCG
rJMFF044H13+ CTATCAGAGTTAGCATTTACAGAGGCCACCCTGCAACGAGGCGAGAAACGCAATGCCCCG
____________________________________________________________
consensus CTATCAGAGTTAGCATTTACAGAGGCCACCCTGCAACGAGGCGAGAAACGCAATGCCCCG
. : . : . : . : . : . :
rJMSF009J13+ AGCCCGGAAGGCTAATTAAGCTGCCAGAAACAATAGCAGAGCTGATCAGCATCGCAGGTG
rJMSF042F23+ AGCCCGGAAGGCTAATTAAGCTGCCAGAAACAATAGCAGAGCTGATCAGCATCGCAGGTG
rJMSF032A15+ AGCCCGGAAGGCTAATTAAGCTGCCAGAAACAATAGCAGAGCTGATCAGCATCGCAGGTG
rJMSF036H12+ AGCCCGGAAGGCTAATTAAGCTGCCAGAAACAATAGCAGAGCTGATCAGCATCGCAGGTG
JMFS048B06- AGCCCGGAAGGCTAATTAAGCTGCCAGAAACAATAGCAGAGCTGATCAGCATCGCAGGTG
JMFS031D08- AGCCCGGAAGGCTAATTAAGCTGCCAGAAACAATAGCAGAGCTGATCAGCATCGCAGGTG
rJMFF044H13+ AGCCCGGAAGGCTAATTAAGCTGCCAGAAACAATAGCAGAGCTGATCAGCATCGCAGGTG
____________________________________________________________
consensus AGCCCGGAAGGCTAATTAAGCTGCCAGAAACAATAGCAGAGCTGATCAGCATCGCAGGTG
. : . : . : . : . : . :
rJMSF009J13+ AGAAGCTTGGATTTGATGCAACAGATTCATCCTTGACAGATGAAGAAGGAGCAATAATTG
rJMSF042F23+ AGAAGCTTGGATTTGATGCAACAGATTCATCCTTGACAGATGAAGAAGGAGCAATAATTG
rJMSF032A15+ AGAAGCTTGGATTTGATGCAACAGATTCATCCTTGACAGATGAAGAAGGAGCAATAATTG
rJMSF036H12+ AGAAGCTTGGATTTGATGCAACAGATTCATCCTTGACAGATGAAGAAGGAGCAATAATTG
JMFS048B06- AGAAGCTTGGATTTGATGCAACAGATTCATCCTTGACAGATGAAGAAGGAGCAATAATTG
JMFS031D08- AGAAGCTTGGATTTGATGCAACAGATTCATCCTTGACAGATGAAGAAGGAGCAATAATTG
rJMFF044H13+ AGAAGCTTGGATTTGATGCAACAGATTCATCCTTGACAGATGAAGAAGGAGCAATAATTG
____________________________________________________________
consensus AGAAGCTTGGATTTGATGCAACAGATTCATCCTTGACAGATGAAGAAGGAGCAATAATTG
. : . : . : . : . : . :
rJMSF009J13+ ACTCCATAGATGTGATAAGAGATAATGACAAGCTTTTTATAGTTGCAGACTGGAATTCCT
rJMSF042F23+ ACTCCATAGATGTGATAAGAGATAATGACAAGCTTTTTATAGTTGCAGACTGGAATTCCT
rJMSF032A15+ ACTCCATAGATGTGATAAGAGATAATGACAAGCTTTTTATAGTTGCAGACTGGAATTCCT
rJMSF036H12+ ACTCCATAGATGTGATAAGAGATAATGACAAGCTTTTTATAGTTGCAGACTGGAATTCCT
JMFS048B06- ACTCCATAGATGTGATAAGAGATAATGACAAGCTTTTTATAGTTGCAGACTGGAATTCCT
JMFS031D08- ACTCCATAGATGTGATAAGAGATAATGACAAGCTTTTTATAGTTGCAGACTGGAATTCCT
rJMFF044H13+ ACTCCATAGATGTGATAAGAGATAATGACAAGCTTTTTATAGTTGCAGACTGGAATTCCT
____________________________________________________________
consensus ACTCCATAGATGTGATAAGAGATAATGACAAGCTTTTTATAGTTGCAGACTGGAATTCCT
. : . : . : . : . : . :
rJMSF009J13+ AGTGCTAACAAAAAAATATGAGATTAATTTTCTGTTGTTTATGTATTTAGGAGGACTTAA
rJMSF042F23+ AGTGCTAAC-AAAAAATATGAGATTAATTTTCTGTTGTTTATGTATTTAGGAGGACTTAA
rJMSF032A15+ AGTGCTAAC-AAAAAATATGAGNNTAATTTTCTGTTGTTTATGTANNTAGGAGGACTTAA
rJMSF036H12+ AGTGCTAAC-AAAAAATATGAGATTAATTTTCTGTTGTTTAT-TATTTAGGAGGACTTAA
JMFS048B06- AGTGCTAAC-AAAAAATATGAGATTAATTTTCTGTTGTTTATGTATTTAGGAGGACTTAA
JMFS031D08- AGTGCTAAC-AAAAAATATGAGATTAATTTTCTGTTGTTTATGTATTTAGGAGGACTTAA
rJMFF044H13+ AGTGCTAAC-AAAAAATATGAGATTAATTTTCTGTTGTTTATGTATTTAGGAGGACTTAA
____________________________________________________________
consensus AGTGCTAAC-AAAAAATATGAGATTAATTTTCTGTTGTTTATGTATTTAGGAGGACTTAA
. : . : . : . : . : . :
rJMSF009J13+ AATAATCATAACCCTTC
rJMSF042F23+ AATAATCATAACCCTTCA
rJMSF032A15+ AATAATCATAACCCTTCAA
rJMSF036H12+ AATAATCATAACCCTTCAAACTATAGTTAATCACC
JMFS048B06- AATAATCATAACCCTTCAAACTATAGTTAATCACCCAATAATCTCTTGTTTAATTGTTTA
JMFS031D08- AATAATCATAACCCTTCAAACTATAGTTAATCACCCAATAATCTCTTGTTTAATTGTTTA
rJMFF044H13+ AATAATCATAACCCTTCAAACTATAGTTAATCACCCAATAATCTCTTGTTTAATTGTTTA
____________________________________________________________
consensus AATAATCATAACCCTTCAAACTATAGTTAATCACCCAATAATCTCTTGTTTAATTGTTTA
. : . : . : . : . : . :
JMFS048B06- AATTTATTAT
JMFS031D08- AATTTATTAT
rJMFF044H13+ AATTTATTATXXXXXXXXXXXXXXXXXXCAAAAGAAATTGGGTGATTACAGTTTTATATA
____________________________________________________________
consensus AATTTATTATNNNNNNNNNNNNNNNNNNCAAAAGAAATTGGGTGATTACAGTTTTATATA
. : . : . : . : . : . :
rJMFF044H13+ CAATGCAATACATATATACAAAAAAAAAAAAAAAACTCTCCAGGGTGGTCCGCCATAAGG
____________________________________________________________
consensus CAATGCAATACATATATACAAAAAAAAAAAAAAAACTCTCCAGGGTGGTCCGCCATAAGG