Contig 011163:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035L02Sequence572007318 (4)dbj|BAO57291.1|6e-65zinc finger CCCH domain-containing protein [Ipomoea nil]766011163 (3)dbj|BAO57291.1|1e-90zinc finger CCCH domain-containing protein [Ipomoea nil]
JMFF043J07Sequence637007318 (4)dbj|BAO57291.1|5e-89zinc finger CCCH domain-containing protein [Ipomoea nil]612011163 (3)dbj|BAO57291.1|3e-18zinc finger CCCH domain-containing protein [Ipomoea nil]
JMSF049J22Sequence694017958dbj|BAO57291.1|2e-54zinc finger CCCH domain-containing protein [Ipomoea nil]715011163 (3)dbj|BAO57291.1|8e-41zinc finger CCCH domain-containing protein [Ipomoea nil]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF035L02+ ACTATAAGAGTATGGAGCCTTGAA
                      ____________________________________________________________
consensus ACTATAAGAGTATGGAGCCTTGAA
 
. : . : . : . : . : . :
rJMFF035L02+ ACTTTGCAGTGCCTACAGATTTTGACCGATCACACCAGCGTTGTGATGTCGTTTCTTTGT
                      ____________________________________________________________
consensus ACTTTGCAGTGCCTACAGATTTTGACCGATCACACCAGCGTTGTGATGTCGTTTCTTTGT
 
. : . : . : . : . : . :
rJMFF035L02+ TGGGACCAATTTCTTTTATCATGTTCTTTGGACAAAACAGTAAAAGTCTGGGTTGCTAAC
                      ____________________________________________________________
consensus TGGGACCAATTTCTTTTATCATGTTCTTTGGACAAAACAGTAAAAGTCTGGGTTGCTAAC
 
. : . : . : . : . : . :
rJMFF035L02+ GAGAGCGGGAACTTGGAAGTGACGTACACCCACCAGGAAGAACATGGAGTGCTAGCCCTG
rJMSF049J22+ GGAGTGCTAGCCCTG
                      ____________________________________________________________
consensus GAGAGCGGGAACTTGGAAGTGACGTACACCCACCAGGAAGAACATGGAGTGCTAGCCCTG
 
. : . : . : . : . : . :
rJMFF035L02+ TGTGGAATGCATGATGCAGAGGCCAAGCCGGTACTGCTTTGCTCTTGCAATGACAATACA
rJMSF049J22+ TGTGGAATGCATGATGCAGAGGCCAAGCCGGTACTGCTTTGCTCTTGCAATGACAATACA
rJMFF043J07+ CAATGACAATACA
                      ____________________________________________________________
consensus TGTGGAATGCATGATGCAGAGGCCAAGCCGGTACTGCTTTGCTCTTGCAATGACAATACA
 
. : . : . : . : . : . :
rJMFF035L02+ GTTCGTGTGTATGATCTTCCATCCTTTTCTGAGAGGGGGAAGATCTTCTCCAAAGAGGCA
rJMSF049J22+ GTTCGTGTGTATGATCTTCCATCCTTTTCTGAGAGGGGGAAGATCTTCTCCAAAGAGGCA
rJMFF043J07+ GTTCGTGTGTATGATCTTCCATCC-TTTCTGAGAGGGGGAAGATCTTCTCCAAAGAGGCA
                      ____________________________________________________________
consensus GTTCGTGTGTATGATCTTCCATCCTTTTCTGAGAGGGGGAAGATCTTCTCCAAAGAGGCA
 
. : . : . : . : . : . :
rJMFF035L02+ ATACGTTGCATAGAGATTGGCCCTGGTGGTTTGTTTTTCACGGGTGACGAATCAGGTCAA
rJMSF049J22+ ATACGTTGCATAGAGATTGGCCCTGGTGGTTTGTTTTTCACGGGTGACGAATCAAGTCAA
rJMFF043J07+ ATACGTTGCATAGAGATTGGCCCTGGTGGTTTGTTTTTCACGGGTGACGAATCAGGTCAA
                      ____________________________________________________________
consensus ATACGTTGCATAGAGATTGGCCCTGGTGGTTTGTTTTTCACGGGTGACGAATCAGGTCAA
 
. : . : . : . : . : . :
rJMFF035L02+ GTACGAGTGTGGAAGTGGTTGGCTGAAACGACTACAGCAGCAGCATAAGGGGCAACTAAA
rJMSF049J22+ GTACGAGTGTGGAAGTGGTTGGCTGAAACGACTACAGCAGCAGCATAAGGGGCAACTAAA
rJMFF043J07+ GTACGAGTGTGGAAGTGGTTGGCTGAAACGACTACAGCAGCAGCATAAGGGGCAACTAAA
                      ____________________________________________________________
consensus GTACGAGTGTGGAAGTGGTTGGCTGAAACGACTACAGCAGCAGCATAAGGGGCAACTAAA
 
. : . : . : . : . : . :
rJMFF035L02+ TTCATTTACCGTAACGTATTTCTATTGTTATGGTCTGTATATTTTCCCCCTTCACTCATT
rJMSF049J22+ TTCATTTACCGTAACGTATTTCTATTGTTATGGTCTGTATATTTTCCCCCTTCACTCATT
rJMFF043J07+ TTCATTTACCGTAACGTATTTCTATTGTTATGGTCTGTATATTTTCCCCCTTCACTCATT
                      ____________________________________________________________
consensus TTCATTTACCGTAACGTATTTCTATTGTTATGGTCTGTATATTTTCCCCCTTCACTCATT
 
. : . : . : . : . : . :
rJMFF035L02+ TATGAGCTCATGAAGAAGGCATAAGATAAGGAATAGCAGTTTTGATCTGTTAGCGATGGC
rJMSF049J22+ TATGAGCTCATGAAGAAGGCATAAGATAAGGAATAGCAGTTTTGATCTGTTAGCGATGGC
rJMFF043J07+ TATGAGCTCATGAAGAAGGCATAAGATAAGGAATAGCAGTTTTGATCTGTTAGCGATGGC
                      ____________________________________________________________
consensus TATGAGCTCATGAAGAAGGCATAAGATAAGGAATAGCAGTTTTGATCTGTTAGCGATGGC
 
. : . : . : . : . : . :
rJMFF035L02+ AGTCGTTAGCTTGTTTTGTGTAGGCGGCTCCTTCTCCTTGTACCTGTTCCGAGGAAAGGT
rJMSF049J22+ AGTCGTTAGCTTGTTTTGTGTAGGCGGCTCCTTCTCCTTGTACCTGTTCCGAGGAAAGGT
rJMFF043J07+ AGTCGTTAGCTTGTTTTGTGTAGGCGGCTCCTTCTCCTTGTACCTGTTCCGAGGAAAGGT
                      ____________________________________________________________
consensus AGTCGTTAGCTTGTTTTGTGTAGGCGGCTCCTTCTCCTTGTACCTGTTCCGAGGAAAGGT
 
. : . : . : . : . : . :
rJMFF035L02+ TGGGGAGTATAAGAGTGTATTTCTCCTGTTCTTTCCTTAAATCTAGAAATAATATGGTAT
rJMSF049J22+ TGGGGAGTATAAGAGTGTATTTCTCCTGTTCTTTCCTTAAATCTAGAAATAATATGGTAT
rJMFF043J07+ TGGGGAGTATAAGAGTGTATTTCTCCTGTTCTTTCCTTAAATCTAGAAATAATATGGTAT
                      ____________________________________________________________
consensus TGGGGAGTATAAGAGTGTATTTCTCCTGTTCTTTCCTTAAATCTAGAAATAATATGGTAT
 
. : . : . : . : . : . :
rJMFF035L02+ TCTTGTAATTTTCGAATGAGGCTCTTATTAATGTCTCTGATATACGACCCCAGATTACAT
rJMSF049J22+ TCTTGTAATTTTCGAATGAGGCTCTTATTAATGTCTCTGATATACGACCCCAGATTACAT
rJMFF043J07+ TCTTGTAATTTTCGAATGAGGCTCTTATTAATGTCTCTGATATACGACCCCAGATTACAT
                      ____________________________________________________________
consensus TCTTGTAATTTTCGAATGAGGCTCTTATTAATGTCTCTGATATACGACCCCAGATTACAT
 
. : . : . : . : . : . :
rJMFF035L02+ TTCCTGAATTATTT
rJMSF049J22+ TTCCTGAATTATTTTGATATTGAGGATGT
rJMFF043J07+ TTCCTGAATTATTTTGATATTGAGGATGTTGTAACTCTTCATTTCATTGCTTAAGAGCTT
                      ____________________________________________________________
consensus TTCCTGAATTATTTTGATATTGAGGATGTTGTAACTCTTCATTTCATTGCTTAAGAGCTT
 
. : . : . : . : . : . :
rJMFF043J07+ TCTCTGCTCCCTGTGGCTGTGATTAGTGATAGTGCAAGTGAAATTCCTGTTTTCTACTCT
                      ____________________________________________________________
consensus TCTCTGCTCCCTGTGGCTGTGATTAGTGATAGTGCAAGTGAAATTCCTGTTTTCTACTCT