Contig 011159:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043B05Sequence647003263 (3)emb|CAN79024.1|1e-70hypothetical protein VITISV_022895 [Vitis vinifera]647011159 (4)ref|XP_009613096.1|2e-40PREDICTED: cullin-associated NEDD8-dissociated protein 1 [Nicotiana tomentosifo
JMFS032D11Sequence593011159 (4)ref|XP_009762524.1|1e-60PREDICTED: cullin-associated NEDD8-dissociated protein 1 [Nicotiana sylvestris]
JMFS110H09Sequence613011159 (4)ref|XP_009762524.1|5e-41PREDICTED: cullin-associated NEDD8-dissociated protein 1 [Nicotiana sylvestris]
JMSF043D04Sequence644011159 (4)ref|XP_009762524.1|3e-47PREDICTED: cullin-associated NEDD8-dissociated protein 1 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS032D11- GGGCTGCAGGTGATGA
                      ____________________________________________________________
consensus GGGCTGCAGGTGATGA
 
. : . : . : . : . : . :
JMFS032D11- TCATTATGATGTTAAAATGCCATGCCACCTCATCCTATCAAAACTTGCAGAGAAGTGCCC
rJMSF043D04+ ACCTCATCCTATCANAACTTGCAGAGAAGTGCCC
                      ____________________________________________________________
consensus TCATTATGATGTTAAAATGCCATGCCACCTCATCCTATCAAAACTTGCAGAGAAGTGCCC
 
. : . : . : . : . : . :
JMFS032D11- GTCTGCTGTCTTAGCAGTGTTAGATTCTTTGGTGGATCCTCTCCAGAAAACTATAAATTT
rJMSF043D04+ GTCTGCTGTNTTAGCAGTGTTAGATTCTTNGGTGGNTCCTCTCCAGAAAACTATAAATTT
JMFS110H09+ CAGTGTTAGATTCTTTGGTGGATCCTCTCCAGAAAACTATAAATTT
rJMFF043B05+ CAGTGTTAGATTCTTTGGTGGATCCTCTCCAGAAAACTATAAATNT
                      ____________________________________________________________
consensus GTCTGCTGTCTTAGCAGTGTTAGATTCTTTGGTGGATCCTCTCCAGAAAACTATAAATTT
 
. : . : . : . : . : . :
JMFS032D11- TAGACCCAAACAAGATGCTGTCAAGCAAGAGGTAGACCGCAATGAAGACATGATTCGGAG
rJMSF043D04+ TAGACCCAAACAAGATGCTGTCAAGCAAGAGGTAGACCGCAANGAAGACATGATTCGGAG
JMFS110H09+ TAGACCCAAACAAGATGCTGTCAAGCAAGAGGTAGACCGCAATGAAGACATGATTCGGAG
rJMFF043B05+ TAGACCCAAACAAGATGCTGTCAAGCAAGAGGTAGACCGCAATGAAGACATGATTCGGAG
                      ____________________________________________________________
consensus TAGACCCAAACAAGATGCTGTCAAGCAAGAGGTAGACCGCAATGAAGACATGATTCGGAG
 
. : . : . : . : . : . :
JMFS032D11- TGCCCTCCGAGCGATTGCATCCTTGAATCGTATCAGCGGAGGGGATTACAGCCACAAGTT
rJMSF043D04+ TGCCCTCCGAGCGATTGCATCCTTGAATCGTATCAGCGGAGGGGATTACAGCCACAAGTT
JMFS110H09+ TGCCCTCCGAGCGATTGCATCCTTGAATCGTATCAGCGGAGGGGATTACAGCCACAAGTT
rJMFF043B05+ TGCCCTCCGAGCGATTGCATCCTTGAATCGTATCAGCGGAGGGGATTACAGCCACAAGTT
                      ____________________________________________________________
consensus TGCCCTCCGAGCGATTGCATCCTTGAATCGTATCAGCGGAGGGGATTACAGCCACAAGTT
 
. : . : . : . : . : . :
JMFS032D11- CAAGAACCTCATGAATGAAATTGCAAAGTCCCAAACACTATGGGATAAGTACTGTTCAAT
rJMSF043D04+ CAAGAACCTCATGAATGAAATTGCAAAGTCCCAAACACTATGGGATAAGTACTGTTCAAT
JMFS110H09+ CAAGAACCTCATGAATGAAATTGCAAAGTCCCAAACACTATGGGATAAGTACTGTTCAAT
rJMFF043B05+ CAAGAACCTCATGAATGAAATTGCAAAGTCCCAAACACTATGGGATAAGTACTGTTCAAT
                      ____________________________________________________________
consensus CAAGAACCTCATGAATGAAATTGCAAAGTCCCAAACACTATGGGATAAGTACTGTTCAAT
 
. : . : . : . : . : . :
JMFS032D11- CAAGAATGAGTGATTTTAAAGCCTTTTTTTTGGTGTTGCGGAGGAATGCAGGGAGGGATT
rJMSF043D04+ CAAGAATGAGTGNTTTTAAAGCCNTTTTTTTGGTGTTGCGGAGGAATGCAGGGAGGGATT
JMFS110H09+ CAAGAATGAGTGATTTTAAAGCCTTTTTTTTGGTGTTGCGGAGGAATGCAGGGAGGGATT
rJMFF043B05+ CAAGAATGAGTGATTTTAAAGCCTTTTTTTTGGTGTTGCGGAGGAATGCAGGGAGGGATT
                      ____________________________________________________________
consensus CAAGAATGAGTGATTTTAAAGCCTTTTTTTTGGTGTTGCGGAGGAATGCAGGGAGGGATT
 
. : . : . : . : . : . :
JMFS032D11- AAATGTGCTTTGGTTGTGAATCATATCATATGGAAGAAGGCAATTATAGGTTGACAGCAG
rJMSF043D04+ AAATGTGCTTTGGTTGTGAATCNTATCATACGGAAGAAGGCAATTATAGGTNGACAGCAG
JMFS110H09+ AAATGTGCTTTGGTTGTGAATCATATCATATGGAAGAAGGCAATTATAGGTTGACAGCAG
rJMFF043B05+ AAATGTGCTTTGGTTGTGAATCATATCATATGGAAGAAGGCAATTATAGGTTGACAGCAG
                      ____________________________________________________________
consensus AAATGTGCTTTGGTTGTGAATCATATCATATGGAAGAAGGCAATTATAGGTTGACAGCAG
 
. : . : . : . : . : . :
JMFS032D11- AGGAGGGCTTGTGTTGTGTTGCACATAAAACCGACAAGGGAGTTTAAATCTTAGGACTCG
rJMSF043D04+ AGGAGGGCNTGTGTTGTGTTGCACATAAAACCGACAAGGGAGTTNAAATCTTAGGACTCG
JMFS110H09+ AGGAGGGCTTGTGTTGTGTTGCACATAAAACCGACAAGGGAGTTTAAATCTTAGGACTCG
rJMFF043B05+ AGGAGGGCTTGTGTTGTGTTGCACATAAAACCGACAAGGGAGTTTAAATCTTAGGACTCG
                      ____________________________________________________________
consensus AGGAGGGCTTGTGTTGTGTTGCACATAAAACCGACAAGGGAGTTTAAATCTTAGGACTCG
 
. : . : . : . : . : . :
JMFS032D11- GGGAGTTGAGACATTGGAATATAGTTTATTTTGTAGGTGATTGTACCTATGATTGTCGTA
rJMSF043D04+ GGGAGTTGAGACATTGGAATATAGTTTATTTTGTAGGTGATTGTACCTATGATTGTCGTA
JMFS110H09+ GGGAGTTGAGACATTGGAATATAGTTTATTTTGTAGGTGATTGTACCTATGATTGTCGTA
rJMFF043B05+ GGGAGTTGAGACATTGGAATATAGTTTATTTTGTAGGTGATTGTACCTATGATTGTCGTA
                      ____________________________________________________________
consensus GGGAGTTGAGACATTGGAATATAGTTTATTTTGTAGGTGATTGTACCTATGATTGTCGTA
 
. : . : . : . : . : . :
JMFS032D11- CTTACGGGGTTGCATTTCTTCTAGCGGTATGGAT
rJMSF043D04+ CNTACGGGGTTGCATTTCTTCTAGCGGTATGGATNTTGTAATTGGCAGCAAGCATCCGTG
JMFS110H09+ CTTACGGGGTTGCATTTCTTCTAGCGGTATGGATTTTGTAATTGGCAGCAAGCATCCGTG
rJMFF043B05+ CTTACGGGGTTGCATTTCTTCTAGCGGTATGGATTTTGTAATTGGCAGCAAGCATCCGTG
                      ____________________________________________________________
consensus CTTACGGGGTTGCATTTCTTCTAGCGGTATGGATTTTGTAATTGGCAGCAAGCATCCGTG
 
. : . : . : . : . : . :
rJMSF043D04+ TTTGTTCATCANTGGTGCTNAATTATGTTAAGTGGATGATGTTTGATTTTTCTGTCAAA
JMFS110H09+ TTTGTTCATCAATGGTGCTTAATTATGTTAAGTGGATGATGTTTGATTTTTCTGTCAAA
rJMFF043B05+ TTTGTTCATCAATGGTGCTTAATTATGTTAAGTGGATGATGTTTGATTTTTCTGTCAAAC
                      ____________________________________________________________
consensus TTTGTTCATCAATGGTGCTTAATTATGTTAAGTGGATGATGTTTGATTTTTCTGTCAAAC
 
. : . : . : . : . : . :
rJMFF043B05+ TTTCAAAATTTGTCXXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus TTTCAAAATTTGTCNNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG