Contig 011154:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009D14Sequence586007308 (2)689011154 (5)ref|XP_006385630.1|3e-95hypothetical protein POPTR_0003s08810g, partial [Populus trichocarpa] gb|ERP6342
JMFF012P01Sequence491007308 (2)751011154 (5)ref|XP_009592603.1|2e-109PREDICTED: protein ABCI7, chloroplastic [Nicotiana tomentosiformis]
JMFF042I24Sequence630019560ref|XP_004244542.1|1e-06PREDICTED: protein ABCI7, chloroplastic [Solanum lycopersicum]584011154 (5)ref|XP_006385630.1|4e-86hypothetical protein POPTR_0003s08810g, partial [Populus trichocarpa] gb|ERP6342
JMFN031N20Sequence614011154 (5)ref|XP_009592603.1|3e-105PREDICTED: protein ABCI7, chloroplastic [Nicotiana tomentosiformis]
JMSF046F17Sequence608015850763011154 (5)ref|XP_009802601.1|3e-109PREDICTED: protein ABCI7, chloroplastic [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF046F17+ TTATGTCAAGA
                      ____________________________________________________________
consensus TTATGTCAAGA
 
. : . : . : . : . : . :
rJMSF046F17+ TTAAATGATACTCCTTACATTCAACACTCTTTCCTCTATTTGTGTATTGTTTTGACTTCC
                      ____________________________________________________________
consensus TTAAATGATACTCCTTACATTCAACACTCTTTCCTCTATTTGTGTATTGTTTTGACTTCC
 
. : . : . : . : . : . :
JMFN031N20- CAGGAATCTAGTAGTATCTACAAGCTCATAGAGG
rJMSF046F17+ ACACAAATTAACTGAAGTTTTATTTGCAGGAATCTAGTAGTATCTACAAGCTCATAGAGA
rJMFF012P01+ CAGGAATCTAGTAGTATCTACAAGCTCATAGAGA
rJMFF009D14+ CAGGAATNTAGTAGTATNTACAAGCTCATAGAGA
                      ____________________________________________________________
consensus ACACAAATTAACTGAAGTTTTATTTGCAGGAATCTAGTAGTATCTACAAGCTCATAGAGA
 
. : . : . : . : . : . :
JMFN031N20- TCAGCACTGGTGGAAAATTGAGCAGGCATAATATTCATATACAGCAAGTAGGCCCCGACA
rJMSF046F17+ TCAGCACTGGTGGAAAATTGAGCAGGCATAATATTCATATACAGCAAGCAGGCCCCGACA
rJMFF012P01+ TCAGCACTGGTGGAAAATTGAGCAGGCATAATATTCATATACAGCAAGCAGGCCCCGACA
rJMFF009D14+ TCAGCACTGGTGGAAAATTGAGCAGGCATAATATTCATATACAGCAAGCAGGCCCCGACA
                      ____________________________________________________________
consensus TCAGCACTGGTGGAAAATTGAGCAGGCATAATATTCATATACAGCAAGCAGGCCCCGACA
 
. : . : . : . : . : . :
JMFN031N20- CCGTCACTGAATTATCTACTTTTCATTTGTCTGTTACTGATCAAACACAAGATCTACACA
rJMSF046F17+ CCGTCACTGAATTATCTACTTTTCATTTGTCTGTCACTGATCAAACACAAGATCTACACA
rJMFF012P01+ CCGTCACTGAATTATCTACTTTTCATTTGTCTGTCACTGATCAAACACAAGATCTACACA
rJMFF009D14+ CCGTCACTGAATTATCTACTTTTCATTTGTCTGTCACTGATCAAACACAAGATCTACACA
rJMFF042I24+ CTACTTTTCATTTGTCTGTTACTGATCAAACACAAGATCTACACA
                      ____________________________________________________________
consensus CCGTCACTGAATTATCTACTTTTCATTTGTCTGTTACTGATCAAACACAAGATCTACACA
 
. : . : . : . : . : . :
JMFN031N20- GTAAATTAGTGTTGGACCATCCACGGGGTTATTCTCAGCAACTACACAAGTGCATTGTGG
rJMSF046F17+ GTAAATTAGTGTTGGACCATCCACGGGGATATTCTCAGCAACTACACAAGTGCATTGTGG
rJMFF012P01+ GTAAATTAGTGTTGGACCATCCACGGGGATATTCTCAGCAACTACACAAGTGCATTGTGG
rJMFF009D14+ GTAAATTAGTGTTGGACCATCCACGGGGATATTCTCAGCAACTACACAAGTGCATTGTGG
rJMFF042I24+ GTAAATTAGTGTTGGACCATCCACGGGGTTATTCTCAGCAACTACACAAGTGCATTGTGG
                      ____________________________________________________________
consensus GTAAATTAGTGTTGGACCATCCACGGGGTTATTCTCAGCAACTACACAAGTGCATTGTGG
 
. : . : . : . : . : . :
JMFN031N20- CTCATTCATCAGGGCAGGCTGTTTTTGATGGGAATGTTCAGGTGAACAGAAACGCACAGC
rJMSF046F17+ CTCATTCATCAGGGCAGGCTGTTTTTGATGGGAATGTTCAGGTGAACAGAAACGCACAAC
rJMFF012P01+ CTCATTCATCAGGGCAGGCTGTTTTTGATGGGAATGTTCAGGTGANCAGANACGCACAAC
rJMFF009D14+ CTCATTCATCAGGGCAGGCTGTTTTTGATGGGAATGTTCAGGTGAACAGAAACGCACAAC
rJMFF042I24+ CTCATTCATCAGGGCAGGCTGTTTTTGATGGGAATGTTCAGGTGAACAGAAACGCACAGC
                      ____________________________________________________________
consensus CTCATTCATCAGGGCAGGCTGTTTTTGATGGGAATGTTCAGGTGAACAGAAACGCACAGC
 
. : . : . : . : . : . :
JMFN031N20- AAACGGACGCAGGGCAACTTACACGGAGCCTCCTCTTGGAGCCCCGAGCAACTGTGAACG
rJMSF046F17+ AAACGAACGCAGGGCAACTTACACGGAGCCTCCTCTTGGAGCCCCGAGCAAGTGTGAACG
rJMFF012P01+ AAACGAACGCAGGGCAACTTACACGGAGCCTCCTCTTGGAGCCCCGAGCAANTGTGAACG
rJMFF009D14+ AAACGAACGCAGGGCAACTTACACGGAGCCTCCTCTTGGAGCCCCGAGCAAGTGTGAACG
rJMFF042I24+ AAACGGACGCAGGGCAACTTACACGGAGCCTCCTCTTGGAGCCCCGAGCAACTGTGAACG
                      ____________________________________________________________
consensus AAACGGACGCAGGGCAACTTACACGGAGCCTCCTCTTGGAGCCCCGAGCAACTGTGAACG
 
. : . : . : . : . : . :
JMFN031N20- TGAAGCCTAACCTGCAAATTATTGCTGATGATGTTAAGTGCTCCCATGGAGCTGCAATCA
rJMSF046F17+ TGAAGCCTAACCTGCAAATTATTGCTGATGATGTTAAGTGCTCCCATGGAGCTGCAATCA
rJMFF012P01+ TGAAGCCTAACCTGCAAATTATTGCTGATGATGTTAAGTGCTCCCATGGAGCTGCAATCA
rJMFF009D14+ TGAAGCCTAACCTGCAAATTATTGCTGATGATGTTAAGTGCTCCCATGGAGCTGCAATCA
rJMFF042I24+ TGAAGCCTAACCTGCAAATTATTGCTGATGATGTTAAGTGCTCCCATGGAGCTGCAATCA
                      ____________________________________________________________
consensus TGAAGCCTAACCTGCAAATTATTGCTGATGATGTTAAGTGCTCCCATGGAGCTGCAATCA
 
. : . : . : . : . : . :
JMFN031N20- GCGACTTGGAAGAAGACCAGCTGTTTTACTTACAGGCACGGGGTATCGACATAAAAGCTG
rJMSF046F17+ GCGACTTGGAAGAGGACCAGCTCTTTTACTTACAGGCACGGGGTATTGACATAAAAACTG
rJMFF012P01+ GCGACTTGGAAGAGGACCAGCTCTTTTACTTACAGGCACGGGGTATTGACATAAAAACTG
rJMFF009D14+ GCGACTTGGAAGAGGACCAGCTCTTTTACTTACAGGCACGGGGTATTGACATAAAAACTG
rJMFF042I24+ GCGACTTGGAAGAAGACCAGCTGTTTTACTTACAGGCACGGGGTATCGACATAAAAGCTG
                      ____________________________________________________________
consensus GCGACTTGGAAGAGGACCAGCTGTTTTACTTACAGGCACGGGGTATTGACATAAAAGCTG
 
. : . : . : . : . : . :
JMFN031N20- CAAGAAAAGCTCTGG-TTTTTTCCTTTGCAGCCGAGGTGGTTTCCCGTCTCCCAGATGAT
rJMSF046F17+ CAAGAAAAGCTCTGG-TTTTTTCCTTTGCAGCCGAGGTGGTTTCCCGTCTCCCAGATGAT
rJMFF012P01+ CAAGAAAAGCTCTGGTTTTTTTCCTTTGCAGCCGAGGTGGTTTCCCGTCTCCCAGATGAT
rJMFF009D14+ CAAGAAAAGCTCTGGTTTTTTTCCTTTGCAGCCGAGGTGGTTTCCCGTCTCCCAGATGAT
rJMFF042I24+ CAAGAAAAGCTCTGG-TTTTTTCCTTTGCAGCCGAGGTGGTTTCCCGTCTCCCAGATGAT
                      ____________________________________________________________
consensus CAAGAAAAGCTCTGG-TTTTTTCCTTTGCAGCCGAGGTGGTTTCCCGTCTCCCAGATGAT
 
. : . : . : . : . : . :
JMFN031N20- TCCATACG
rJMSF046F17+ TCCATACGAAAGAAAGTTGAGGATCAAATTAGAACACTGCTCGAATCCACCAATCCCAAA
rJMFF012P01+ TCCATACGAAAGAAAGTTGAGGATCAAATTAGAACACTGCTCGAATCCACCAATCCCAAA
rJMFF009D14+ TCCATACGAAAGAAAGTTGAGGATCAAATTAGAACACTGCTCGAATCCACCAATCCCAAA
rJMFF042I24+ TCCATACGAAAGAAAGTTGAAGATCAAATTAGAACACTGCTCGAATCCATCAATCCCAAA
                      ____________________________________________________________
consensus TCCATACGAAAGAAAGTTGAGGATCAAATTAGAACACTGCTCGAATCCACCAATCCCAAA
 
. : . : . : . : . : . :
rJMSF046F17+ CCGTGAGTCTTCATAAATTATTTTGTA
rJMFF012P01+ CCGTGAGTCTTCATAAATTATTTTGTA
rJMFF009D14+ CCGTGAGTCTTCATAAATTATTTTGTA
rJMFF042I24+ CTGTGACTCTTCGTAAATTATTTTGTAGATGTTGTTTATGATTCATTGTATGCTAGAAAA
                      ____________________________________________________________
consensus CCGTGAGTCTTCATAAATTATTTTGTAGATGTTGTTTATGATTCATTGTATGCTAGAAAA
 
. : . : . : . : . : . :
rJMFF042I24+ TTAGAGAAATTGAACGATATGATGATTGTTCAGTCTCGCTTAATTAATTATATTGTTCTT
                      ____________________________________________________________
consensus TTAGAGAAATTGAACGATATGATGATTGTTCAGTCTCGCTTAATTAATTATATTGTTCTT