Contig 011142:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001K15Sequence532011603 (8)ref|XP_006341470.1|3e-92PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]739011142 (9)emb|CDO98302.1|3e-96unnamed protein product [Coffea canephora]
JMFF022K01Sequence477011603 (8)ref|XP_006341470.1|7e-81PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]741011142 (9)emb|CDO98302.1|2e-102unnamed protein product [Coffea canephora]
JMFF031L18Sequence571011603 (8)ref|XP_009614005.1|7e-102PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Nicotiana tomentosiformi723011142 (9)emb|CDO98302.1|4e-101unnamed protein product [Coffea canephora]
JMFF035J07Sequence573011603 (8)ref|XP_009614005.1|1e-102PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Nicotiana tomentosiformi599011142 (9)emb|CDO98302.1|3e-68unnamed protein product [Coffea canephora]
JMFF041A17Sequence654011603 (8)ref|XP_006341470.1|8e-122PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]567011142 (9)emb|CDO98302.1|2e-53unnamed protein product [Coffea canephora]
JMFS007A02Sequence142011142 (9)ref|XP_011082927.1|2e-13PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Sesamum indicum]
JMSF015E05Sequence527011603 (8)ref|XP_006341470.1|6e-94PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]752011142 (9)emb|CDO98302.1|1e-108unnamed protein product [Coffea canephora]
JMSF037F16Sequence626011603 (8)ref|XP_006341470.1|1e-115PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]713011142 (9)emb|CDO98302.1|5e-102unnamed protein product [Coffea canephora]
JMSF037H21Sequence679011603 (8)ref|XP_006341470.1|2e-130PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]761011142 (9)emb|CDO98302.1|1e-101unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF015E05+ ACTATTAAGAAGAA
                      ____________________________________________________________
consensus ACTATTAAGAAGAA
 
. : . : . : . : . : . :
rJMSF015E05+ CATGGTGTCAATTTCCAAGGAAAAGATAAAGGAACATCAAAGGGTTTTCACTCCATCAGT
rJMFF031L18+ GGAACATCAAAGGGTTTTCACTCCATCAGT
rJMSF037F16+ AAGGAACATCAAAGGGTTTTCACTCCATCAGT
rJMFF022K01+ TTTTCACTCCATCAGT
rJMFF001K15+ TTTTCACTCCATCAGT
rJMSF037H21+ GTCAATTTCCAAGGAAAAGAT-AAGGAACATCAAAGGGTTTTCACTCCATCAGT
                      ____________________________________________________________
consensus CATGGTGTCAATTTCCAAGGAAAAGATAAAGGAACATCAAAGGGTTTTCACTCCATCAGT
 
. : . : . : . : . : . :
rJMSF015E05+ CATTGAACCATCGTTTGGTATTGGGAGGATTATATACTGTCTCTATGAGCATTCTTTCTA
rJMFF031L18+ CATTGAACCATCGTTTGGTATTGGGAGGATTATATACTGTCTCTATGAGCATTCTTTCTA
rJMSF037F16+ CATTGAACCATCGTTTGGTATTGGGAGGATTATATACTGTCTCTATGAGCATTCTTTCTA
rJMFF022K01+ CATTGAACCATCGTTTGGTATTGGGAGGATTATATACTGTCTCTATGAGCATTCTTTCTA
rJMFF001K15+ CATTGAACCATCGTTTGNTATTGGGAGGATTATATACTGTCTCTATGAGCATTCTTTCTA
rJMSF037H21+ CATTGAACCATCGTTTGGTATTGGGAGGATTATATACTGTCTCTATGAGCATTCTTTCTA
                      ____________________________________________________________
consensus CATTGAACCATCGTTTGGTATTGGGAGGATTATATACTGTCTCTATGAGCATTCTTTCTA
 
. : . : . : . : . : . :
rJMSF015E05+ TACAAGACCCAGCCGAGATGGGGATGAACAGCTCAACGTCTTCCGTTTCCCACCATTGGT
rJMFF031L18+ TACAAGACCCAGCCGAGATGGGGATGAACAGCTCAACGTCTTCCGTTTCCCACCATTGGT
rJMSF037F16+ TACAAGACCCAGCCGAGATGGGGATGAACAGCTCAACGTCTTCCGTTTCCCACCATTGGT
JMFS007A02- AGCCGAGATGGGGATGAACAGCTCAACGTCTTCCGTTTCCCACCATTGGT
rJMFF022K01+ TACAAGACCCAGCCGAGATGGGGATGAACAGCTCAACGTCTTCCGTTTCCCACCATTGGT
rJMFF001K15+ TACAAGACCCAGCCGAGATGGGGATGAACAGCTCAACGTCTTCCGTTTCCCACCATTGGT
rJMFF035J07+ ACGTCTTCCGTTTCCCACCATTGGT
rJMSF037H21+ TACAAGACCCAGCCGAGATGGGGATGAACAGCTCAACGTCTTCCGTTTCCCACCATTGGT
                      ____________________________________________________________
consensus TACAAGACCCAGCCGAGATGGGGATGAACAGCTCAACGTCTTCCGTTTCCCACCATTGGT
 
. : . : . : . : . : . :
rJMSF015E05+ AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAAGTTGC
rJMFF031L18+ AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAAGTTGC
rJMSF037F16+ AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAAGTTGC
JMFS007A02- AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAA
rJMFF022K01+ AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAAGTTGC
rJMFF001K15+ AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAAGTTGC
rJMFF035J07+ AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAAGTTGC
rJMSF037H21+ AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAAGTTGC
rJMFF041A17+ GCAAAATGCAGAATATGAGGAAGTTGC
                      ____________________________________________________________
consensus AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAAGTTGC
 
. : . : . : . : . : . :
rJMSF015E05+ CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
rJMFF031L18+ CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
rJMSF037F16+ CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
rJMFF022K01+ CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
rJMFF001K15+ CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
rJMFF035J07+ CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
rJMSF037H21+ CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
rJMFF041A17+ CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
                      ____________________________________________________________
consensus CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
 
. : . : . : . : . : . :
rJMSF015E05+ CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
rJMFF031L18+ CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
rJMSF037F16+ CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
rJMFF022K01+ CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
rJMFF001K15+ CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
rJMFF035J07+ CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
rJMSF037H21+ CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
rJMFF041A17+ CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
                      ____________________________________________________________
consensus CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
 
. : . : . : . : . : . :
rJMSF015E05+ TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
rJMFF031L18+ TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
rJMSF037F16+ TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
rJMFF022K01+ TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
rJMFF001K15+ TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
rJMFF035J07+ TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
rJMSF037H21+ TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
rJMFF041A17+ TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
                      ____________________________________________________________
consensus TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
 
. : . : . : . : . : . :
rJMSF015E05+ TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
rJMFF031L18+ TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
rJMSF037F16+ TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
rJMFF022K01+ TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
rJMFF001K15+ TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
rJMFF035J07+ TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
rJMSF037H21+ TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
rJMFF041A17+ TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
                      ____________________________________________________________
consensus TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
 
. : . : . : . : . : . :
rJMSF015E05+ TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
rJMFF031L18+ TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
rJMSF037F16+ TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
rJMFF022K01+ TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
rJMFF001K15+ TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
rJMFF035J07+ TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
rJMSF037H21+ TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
rJMFF041A17+ TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
                      ____________________________________________________________
consensus TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
 
. : . : . : . : . : . :
rJMSF015E05+ ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
rJMFF031L18+ ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
rJMSF037F16+ ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
rJMFF022K01+ ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
rJMFF001K15+ ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
rJMFF035J07+ ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
rJMSF037H21+ ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
rJMFF041A17+ ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
                      ____________________________________________________________
consensus ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
 
. : . : . : . : . : . :
rJMSF015E05+ TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
rJMFF031L18+ TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
rJMSF037F16+ TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
rJMFF022K01+ TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
rJMFF001K15+ TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
rJMFF035J07+ TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
rJMSF037H21+ TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
rJMFF041A17+ TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
                      ____________________________________________________________
consensus TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
 
. : . : . : . : . : . :
rJMSF015E05+ TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
rJMFF031L18+ TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
rJMSF037F16+ TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
rJMFF022K01+ TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
rJMFF001K15+ TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
rJMFF035J07+ TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
rJMSF037H21+ TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
rJMFF041A17+ TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
                      ____________________________________________________________
consensus TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
 
. : . : . : . : . : . :
rJMSF015E05+ TCAAGCTAGAAC
rJMFF031L18+ TCAAGCTAGAACACACACTATCTGGTGCTGGAG
rJMSF037F16+ TCAAGCTAGAACACACA
rJMFF022K01+ TCAAGCTAGAACACACACTATCTGGTGCTGGAG
rJMFF001K15+ TCAAGCTAGAACACACACTATCTGGTGCTGGAG
rJMFF035J07+ TCAAGCTAGAACACACACTATCTGGTGCTGGAG
rJMSF037H21+ TCAAGCTAGAACACACACTATCTGGTGCTGGAG
rJMFF041A17+ TCAAGCTAGAACACACACTATCTGGTGCTTGGAGATATTGTTGCTTTTTTCTAAGGTTAG
                      ____________________________________________________________
consensus TCAAGCTAGAACACACACTATCTGGTGCTGGAGGATATTGTTGCTTTTTTCTAAGGTTAG