| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003P03 | Sequence | 557 | 000012 (4) | emb|CDP11435.1| | 4e-26 | unnamed protein product [Coffea canephora] | 754 | 011135 (3) | ref|XP_009787722.1| | 199 | PREDICTED: uncharacterized protein LOC104235617 [Nicotiana sylvestris] ref|XP_00 |
| JMFF023G03 | Sequence | 450 | 000012 (4) | ref|XP_003634525.1| | 6e-10 | PREDICTED: uncharacterized protein LOC100854917 isoform X1 [Vitis vinifera] emb | 750 | 011135 (3) | ref|XP_009787722.1| | 199 | PREDICTED: uncharacterized protein LOC104235617 [Nicotiana sylvestris] ref|XP_00 |
| JMFF040C02 | Sequence | 498 | 000012 (4) | emb|CDP11435.1| | 3e-30 | unnamed protein product [Coffea canephora] | 754 | 011135 (3) | ref|XP_009787722.1| | 153 | PREDICTED: uncharacterized protein LOC104235617 [Nicotiana sylvestris] ref|XP_00 |
This contig is upended
. : . : . : . : . : . :
rJMFF023G03+ CTT
rJMFF003P03+ CTT
____________________________________________________________
consensus CTT
. : . : . : . : . : . :
rJMFF023G03+ CCAGGAAGAGCAGGCTTGTCCGTGGGTGCGCTTCCTTTGTCTGCTTTGGTCGTGCTG-CC
rJMFF003P03+ CCAGGAAGAGCAGGCTTGTCCGTGGGTGCGCTTCCTTTGTCTGCTTTGGTCGTGCTG-CC
rJMFF040C02+ TGCGCTTCCTTTGTCTGCTTTGGTCGTGCTGCCC
____________________________________________________________
consensus CCAGGAAGAGCAGGCTTGTCCGTGGGTGCGCTTCCTTTGTCTGCTTTGGTCGTGCTG-CC
. : . : . : . : . : . :
rJMFF023G03+ GCTGGACTCGAGAGCCCATCTCCGCTTAAGGTTGGTCCTACTCAGCAGCAAGAAGTATCG
rJMFF003P03+ GCTGGACTCGAGAGCCCATCTCCGCTTAAGGTTGGTCCTACTCAGCAGCAAGAAGTATCG
rJMFF040C02+ GCTGGACTCGAGAGCCCATCTCCGCTTAAGGTTGGTCNTACTCAGCAGCAAGAAGTATCG
____________________________________________________________
consensus GCTGGACTCGAGAGCCCATCTCCGCTTAAGGTTGGTCCTACTCAGCAGCAAGAAGTATCG
. : . : . : . : . : . :
rJMFF023G03+ CCAGCCAGTTGCCCAGCTTCTGAAAAGGGTAAGGACACCCATTCTGCTAGTCTTGTTGAA
rJMFF003P03+ CCAGCCAGTTGCCCAGCTTCTGAAAAGGGTAAGGACACCCATTCTGCTAGTCTTGTTGAA
rJMFF040C02+ CCAGCCAGTTGCCCAGCTTCTGAAAAGGGTAAGGACACCCATTCTGCTAGTCTTGTTGAA
____________________________________________________________
consensus CCAGCCAGTTGCCCAGCTTCTGAAAAGGGTAAGGACACCCATTCTGCTAGTCTTGTTGAA
. : . : . : . : . : . :
rJMFF023G03+ GGCACAAATACATCTCAGAAGCCTTCACTTAAGAGTAGCTTAAGGAAACCAGCAAATAGC
rJMFF003P03+ GGCACAAATACATCTCAGAAGCCTTCACTTAAGAGTAGCTTAAGGAAACCAGCAAATAGC
rJMFF040C02+ GGCACAAATACATCTCAGAAGCCTTCACTTAAGAGTAGCTTAAGGAAACCAGCAAATAGC
____________________________________________________________
consensus GGCACAAATACATCTCAGAAGCCTTCACTTAAGAGTAGCTTAAGGAAACCAGCAAATAGC
. : . : . : . : . : . :
rJMFF023G03+ ATAGCGGTTTCTGGTGGTAGTGCCAATGATTGTGAGACCGTGGGTGAATCGAGTAATGAT
rJMFF003P03+ ATAGCGGTTTCTGGTGGTAGTGCCAATGATTGTGAGACCGTGGGTGAATCGAGTAATGAT
rJMFF040C02+ ATAGCGGTTTCTGGTGGTAGTGCCAATGATTGTGAGACCGTGGGTGAATCGAGTAATGAT
____________________________________________________________
consensus ATAGCGGTTTCTGGTGGTAGTGCCAATGATTGTGAGACCGTGGGTGAATCGAGTAATGAT
. : . : . : . : . : . :
rJMFF023G03+ GCCCCTGATCAAATCCTTAGAAGGAAGGTTCAGTGGACAGATACATCTGGTGGGGAGCTT
rJMFF003P03+ GCCCCTGATCAAATCCTTAGAAGGAAGGTTCAGTGGACAGATACATCTGGTGGGGAGCTT
rJMFF040C02+ GCCCCTGATCAAATCCTTAGAAGGAAGGTTCAGTGGACAGATACATCTGGTGGGGAGCTT
____________________________________________________________
consensus GCCCCTGATCAAATCCTTAGAAGGAAGGTTCAGTGGACAGATACATCTGGTGGGGAGCTT
. : . : . : . : . : . :
rJMFF023G03+ TTCGAGATCCGGGAATTTGAGCTTAGCGATGAAGGTGAATCAGGCAATGAGTATGATAGC
rJMFF003P03+ TTCGAGATCCGGGAATTTGAGCTTAGCGATGAAGGTGAATCAGGCAATGAGTATGATAGC
rJMFF040C02+ TTCGAGATCCGGGAATTTGAGCTTAGCGATGAAGGTGAATCAGGCAATGAGTATGATAGC
____________________________________________________________
consensus TTCGAGATCCGGGAATTTGAGCTTAGCGATGAAGGTGAATCAGGCAATGAGTATGATAGC
. : . : . : . : . : . :
rJMFF023G03+ GGGAACGAAAGGAGTTGTTTGTGCAAGATTATGTAGTTTAAGGTTGCAAAGGAGGTTTCA
rJMFF003P03+ GGGAACGAAAGGAGTTGTTTGTGCAAGATTATGTAGTTTAAGGTTGCAAAGGAGGTTTCA
rJMFF040C02+ GGGAACGAAAGGAGTTGTTTGTGCAAGATTATGTAGTTTAAGGTTGCAAAGGAGGTTTCA
____________________________________________________________
consensus GGGAACGAAAGGAGTTGTTTGTGCAAGATTATGTAGTTTAAGGTTGCAAAGGAGGTTTCA
. : . : . : . : . : . :
rJMFF023G03+ ACCAGGTTGTTTTTGGATAGAAAGACGAGTAGGCGAAATGTGAGCCCTTGCATTCAACCA
rJMFF003P03+ ACCAGGTTGTTTTTGGATAGAAAGACGAGTAGGCGAAATGTGAGCCCTTGCATTCAACCA
rJMFF040C02+ ACCAGGTTGTTTTTGGATAGAAAGACGAGTAGGCGAAATGTGAGCCCTTGCATTCAACCA
____________________________________________________________
consensus ACCAGGTTGTTTTTGGATAGAAAGACGAGTAGGCGAAATGTGAGCCCTTGCATTCAACCA
. : . : . : . : . : . :
rJMFF023G03+ TAGCCTGAGGAAGAAGATGAAATCTGTTGCCATATGCTGCTGCAAGAGTTTCAGAATTCG
rJMFF003P03+ TAGCCTGAGGAAGAAGATGAAATCTGTTGCCATATGCTGCTGCAAGAGTTTCAGAATTCG
rJMFF040C02+ TAGCCTGAGGAAGAAGATGAAATCTGTTGCCATATGCTGCTGCAAGAGTTTCAGAATTCG
____________________________________________________________
consensus TAGCCTGAGGAAGAAGATGAAATCTGTTGCCATATGCTGCTGCAAGAGTTTCAGAATTCG
. : . : . : . : . : . :
rJMFF023G03+ CAGAACGACCATCCCTTTGAAATGGCTTTTTGGTCACCTGTTGTGTCTATAATCTATATA
rJMFF003P03+ CAGAACGACCATCCCTTTGAAATGGCTTTTTGGTCACCTGTTGTGTCTATAATCTATATA
rJMFF040C02+ CAGAACGACCATCCCTTTGAAATGGCTTTTTGGTCACCTGTTGTGTCTATAATCTATATA
____________________________________________________________
consensus CAGAACGACCATCCCTTTGAAATGGCTTTTTGGTCACCTGTTGTGTCTATAATCTATATA
. : . : . : . : . : . :
rJMFF023G03+ TTGAGTTTCTTGAATGTCAATTTTGTTAACAGGCTTTTGGTGTCATTGTTTTTCATCATC
rJMFF003P03+ TTGAGTTTCTTGAATGTCAATTTTGTTAACAGGCTTTTGGTGTCATTGTTTTTCATCATC
rJMFF040C02+ TTGAGTTTCTTGAATGTCAATTTTGTTAACAGGCTTTTGGTGTCATTGTTTTTCATCATC
____________________________________________________________
consensus TTGAGTTTCTTGAATGTCAATTTTGTTAACAGGCTTTTGGTGTCATTGTTTTTCATCATC
. : . : . : . : . : . :
rJMFF023G03+ ATTATTAATATACTAGTGC
rJMFF003P03+ ATTATTAATATACTAGTGC
rJMFF040C02+ ATTATTAATATACTAGTGCTGGTCCGAGCAGTGCTCGGATAATATTTTACATGACATTTA
____________________________________________________________
consensus ATTATTAATATACTAGTGCTGGTCCGAGCAGTGCTCGGATAATATTTTACATGACATTTA