Contig 011119:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF043P06-                                                              GGAAACACT
                      ____________________________________________________________
consensus                                                                GGAAACACT
 
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JMFF035J18-               CTCTCTCTTTCTCTTTCTAAAAGCCTCTTCTCTCTCTCTAAACTCTATCTCTCTCT
JMSF043P06-           CTTCCTCTCTCTTTCTCTTTCTAAAAGCCTCTTCTCTCTCTCTAAACTCTATCTCTCTCT
                      ____________________________________________________________
consensus             CTTCCTCTCTCTTTCTCTTTCTAAAAGCCTCTTCTCTCTCTCTAAACTCTATCTCTCTCT
 
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JMFF035J18-           CTCTGCCATCATCCCTTCAATCACACAGAAGTAAAAGAATGAGCAAATCTCTCAGAAGTT
JMSF043P06-           CTCTGCCATCATCCCTTCAATCACACAGAAGTAAAAGAATGAGCAAATCTCTCAGAAGTT
                      ____________________________________________________________
consensus             CTCTGCCATCATCCCTTCAATCACACAGAAGTAAAAGAATGAGCAAATCTCTCAGAAGTT
 
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JMFF035J18-           CAGGTGGTTAACAACGATATATCAACTGAAATGGGAGGCTGCTGTTGTTGCTGTGCTTCT
JMSF043P06-           CAGGTGGTTAACAACGATATATCAACTGAAATGGGAGGCTGCTGTTGTTGCTGTGCTTCT
                      ____________________________________________________________
consensus             CAGGTGGTTAACAACGATATATCAACTGAAATGGGAGGCTGCTGTTGTTGCTGTGCTTCT
 
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JMFF035J18-           AAAGGAAGGGAACTGAATAGCTCATCGCCTTTTTACCATTACCCCAGAGTGTCAGAGGAG
JMSF043P06-           AAAGGAAGGGAACTGAATAGCTCATCGCCTTTTTACCATTACCCCAGAGTGTCAGAGGAG
                      ____________________________________________________________
consensus             AAAGGAAGGGAACTGAATAGCTCATCGCCTTTTTACCATTACCCCAGAGTGTCAGAGGAG
 
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JMFF035J18-           CGACAACCTTTATCGCACCATGGTAGCACAGCCTTGGTACTCTCCACAGGCCTCTTAGTT
JMSF043P06-           CGACAACCTTTATCGCACCATGGTAGCACAGCCTTGGTACTCTCCACAGGCCTCTTAGTT
                      ____________________________________________________________
consensus             CGACAACCTTTATCGCACCATGGTAGCACAGCCTTGGTACTCTCCACAGGCCTCTTAGTT
 
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JMFF035J18-           GATACAAATCTTGATACCTCAAGTCCGGATACTTATAGGCCACCTCCAACACCAAGGCCA
JMSF043P06-           GATACAAATCTTGATACCTCAAGTCCGGATACTTATAGGCCACCTCCAACACCAAGGCCA
                      ____________________________________________________________
consensus             GATACAAATCTTGATACCTCAAGTCCGGATACTTATAGGCCACCTCCAACACCAAGGCCA
 
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JMFF035J18-           TATGAAACACATGCAGGACGGCCTAGAACACCACCAGGTAATCAAGATGGCCACA     
JMSF043P06-           TATGAAACACATGCAGGACGGCCTAGAACACCACCAGGTAATCAAGATGGCCACAAGAAT
                      ____________________________________________________________
consensus             TATGAAACACATGCAGGACGGCCTAGAACACCACCAGGTAATCAAGATGGCCACAAGAAT
 
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JMSF043P06-           GAGGCAGCGGCACAGACAAAAGACACTGAAACTTGTGAAGAAGCAAACTCTGGAAATGGT
                      ____________________________________________________________
consensus             GAGGCAGCGGCACAGACAAAAGACACTGAAACTTGTGAAGAAGCAAACTCTGGAAATGGT
 
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JMSF043P06-           ACAGAAATAGCTGACACAGCCACAAAAGGATCTGATGCTAAAATGCAAGATAATGTTGAG
                      ____________________________________________________________
consensus             ACAGAAATAGCTGACACAGCCACAAAAGGATCTGATGCTAAAATGCAAGATAATGTTGAG
 
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JMSF043P06-           CTTACTGCTCAAAAGGAAGTGGTAGATGAACTTGAAAAATCTGGTGAACTTAAAAAGTCC
                      ____________________________________________________________
consensus             CTTACTGCTCAAAAGGAAGTGGTAGATGAACTTGAAAAATCTGGTGAACTTAAAAAGTCC
 
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JMSF043P06-           AATGAACCTATTGTTCCATTACTTCAGGAAGAGGAGGATGTTTGCCCAACTTGCCTTGAA
rJMSF043P06+                                            AGGATGTTTGCCCAACTTGCCNTGAA
                      ____________________________________________________________
consensus             AATGAACCTATTGTTCCATTACTTCAGGAAGAGGAGGATGTTTGCCCAACTTGCCTTGAA
 
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JMSF043P06-           GAATATGATGAGGAGAATCCAAAGATCATAACAAAATGTGAGCATCATTTTCACCTTTCA
rJMSF043P06+          GAATATGATGAGGNGAATCCAAAGATCATAACAAAATGTGAGCATCATTTTCNCCTTTCA
                      ____________________________________________________________
consensus             GAATATGATGAGGAGAATCCAAAGATCATAACAAAATGTGAGCATCATTTTCACCTTTCA
 
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JMSF043P06-           TGCATTCTCGAATGGATGGAAAGAAGTGACACTTGTCCAGTCTGTGATC           
rJMSF043P06+          TGCNTTNTNGAATGGATGGAAAGAAGTGACNCTTGTCCCGTNTGTGATCNGGAAANGGTT
                      ____________________________________________________________
consensus             TGCATTCTCGAATGGATGGAAAGAAGTGACACTTGTCCCGTCTGTGATCNGGAAANGGTT
 
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rJMSF043P06+          TTCAGNGCCTAGATTGATTGATCNTTGTCNCNCTTTTGCTATTGGCNTTTTGGTATTAAN
                      ____________________________________________________________
consensus             TTCAGNGCCTAGATTGATTGATCNTTGTCNCNCTTTTGCTATTGGCNTTTTGGTATTAAN
 
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rJMSF043P06+          GTAGAAAGGNGTTTTTGGNGACAAGTCGCNATCCTTAGATTGCTCNTTTGATTTTGCGGN
rJMFF035J18+                                        ATCCTTAGATTGNTCATTTGATTTTGNGGN
                      ____________________________________________________________
consensus             GTAGAAAGGNGTTTTTGGNGACAAGTCGCNATCCTTAGATTGCTCATTTGATTTTGCGGN
 
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rJMSF043P06+          GNTGTTTTAGTTCTTTAAATGAATTGAAAAAAAAATAATTTCAAAAAAAAAAATGGAAAA
rJMFF035J18+          GTTGTTTTAGTTNTTTAAANGAATTGAAAAAAAAATAATTTCAAAAAAAAAAATGGAAAA
                      ____________________________________________________________
consensus             GTTGTTTTAGTTCTTTAAATGAATTGAAAAAAAAATAATTTCAAAAAAAAAAATGGAAAA
 
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rJMSF043P06+          GAAGAAAATGCAAGTACATCAGTACATGGAATGTACATAGGTTTTCCTTTGCGGTTTCTT
rJMFF035J18+          GAAGAAAATGCAAGTACATCAGTACATGGAATGTACATAGGTTTTCCTTTGCGGTTTCTT
                      ____________________________________________________________
consensus             GAAGAAAATGCAAGTACATCAGTACATGGAATGTACATAGGTTTTCCTTTGCGGTTTCTT
 
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rJMSF043P06+          CGTATTTAATGATGATGAACTATATAGGTTATACATAGGGATTGGAGGAAATATCTTGCT
rJMFF035J18+          CGTATTTAATGATGATGAACTATATAGGTTATACATAGGGATTGGAGGAAATATCTTGCT
                      ____________________________________________________________
consensus             CGTATTTAATGATGATGAACTATATAGGTTATACATAGGGATTGGAGGAAATATCTTGCT
 
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rJMSF043P06+          GGCTGAAGCTTCCTACTAGATAGGTGCATCAAGATGTTGTGTTGGGTATTGCCTCCCGTT
rJMFF035J18+          GGCTGAAGCTTCCTACTAGATAGGTGCATCAAGATGTTGTGTTGGGTATTGCCTCCCGTT
                      ____________________________________________________________
consensus             GGCTGAAGCTTCCTACTAGATAGGTGCATCAAGATGTTGTGTTGGGTATTGCCTCCCGTT
 
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rJMSF043P06+          TTGGGTGGTTCCTGGCTCCCCACTGCTGCTAACCTTGTCTCTCAAGGCTTGTGGACAATC
rJMFF035J18+          TTGGGTGGTTCCTGGCTCCCCACTGCTGCTAACCTTGTCTCTCAAGGCTTGTGGACAATC
                      ____________________________________________________________
consensus             TTGGGTGGTTCCTGGCTCCCCACTGCTGCTAACCTTGTCTCTCAAGGCTTGTGGACAATC
 
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rJMSF043P06+          TGTCGTATTCTATCCATCTGTTCTTTATAGCGCTT                         
rJMFF035J18+          TGTCGTATTCTATCCATCTGTTCTTTATAGCGCTTTGTATATTTCCCCAGAAATTAAGAC
                      ____________________________________________________________
consensus             TGTCGTATTCTATCCATCTGTTCTTTATAGCGCTTTGTATATTTCCCCAGAAATTAAGAC
 
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rJMFF035J18+          CATCTTCAGTGCCTATTACGCTTATTTTTTTGTTTTGGTTTTGGTTTTGGTTCTTTTGTT
                      ____________________________________________________________
consensus             CATCTTCAGTGCCTATTACGCTTATTTTTTTGTTTTGGTTTTGGTTTTGGTTCTTTTGTT
 
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rJMFF035J18+          GTTGTTGCATTTGATTTTGGGACGGGAGGAACTTTGGCAACCTGCATTAGAAAATCAATT
                      ____________________________________________________________
consensus             GTTGTTGCATTTGATTTTGGGACGGGAGGAACTTTGGCAACCTGCATTAGAAAATCAATT