Contig 011113:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034A24Sequence508005257 (3)ref|XP_009609678.1|8e-33PREDICTED: KH domain-containing protein At4g18375 [Nicotiana tomentosiformis]740011113 (2)ref|XP_009591360.1|4e-17PREDICTED: KH domain-containing protein At4g18375-like, partial [Nicotiana tome
JMSF043D10Sequence818005257 (3)ref|XP_009760870.1|7e-130PREDICTED: KH domain-containing protein At4g18375 [Nicotiana sylvestris]790011113 (2)ref|XP_009591360.1|2e-52PREDICTED: KH domain-containing protein At4g18375-like, partial [Nicotiana tome

Alignment

This contig is upended


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rJMSF043D10+                      CGGATGCCTTATAGGGAAAGGTGGTTCCATCATTAGTGAGATGAGAAA
                      ____________________________________________________________
consensus                         CGGATGCCTTATAGGGAAAGGTGGTTCCATCATTAGTGAGATGAGAAA
 
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rJMSF043D10+          TACCACGAGGGCGGGTATTCGAATCCTAGCCAAGGAAAATCTACCCAAAGTTGCATCTGA
rJMFF034A24+                                                  CTACCCAAAGTTGCATCTGA
                      ____________________________________________________________
consensus             TACCACGAGGGCGGGTATTCGAATCCTAGCCAAGGAAAATCTACCCAAAGTTGCATCTGA
 
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rJMSF043D10+          AGATGATGAGATGGTGCAGATTACTGGAGAGCTCAATGTTGCTAGCACTGCATTGTT-CC
rJMFF034A24+          AGATGATGAGATGGTGCAGATTACTGGAGAGCTCAATGTTGCTAGCACTGCATTGTTNCC
                      ____________________________________________________________
consensus             AGATGATGAGATGGTGCAGATTACTGGAGAGCTCAATGTTGCTAGCACTGCATTGTTNCC
 
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rJMSF043D10+          AAATAGTTTTGCGCTTGAGGGCAAATGTTTTTGAGATGGAAGGAACTTTAGCTGCAATTT
rJMFF034A24+          AAATAGTTTTGCGCTTGAGGGCAAATGTTTTTGAGATGGAAGGAACTTTAGCTGCAATTT
                      ____________________________________________________________
consensus             AAATAGTTTTGCGCTTGAGGGCAAATGTTTTTGAGATGGAAGGAACTTTAGCTGCAATTT
 
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rJMSF043D10+          CACCAGTTCTTCCATATGGTGGAGTGCCTCCCAACATCTCAGAAGGTTCAAAGTATTCCA
rJMFF034A24+          CACCAGTTCTTCCATATGGTGGAGTGCCTCCCAACATCTCAGAAGGTTCAAAGTATTCCA
                      ____________________________________________________________
consensus             CACCAGTTCTTCCATATGGTGGAGTGCCTCCCAACATCTCAGAAGGTTCAAAGTATTCCA
 
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rJMSF043D10+          ATCGTGATAATAAATCACGTAGCCATGGGCATCCAATGTATTCTGGTGTACGTGATTTTG
rJMFF034A24+          ATCGTGATAATAAATCACGTAGCCATGGGCATCCAATGTATTCTGGTGTACGTGATTTTG
                      ____________________________________________________________
consensus             ATCGTGATAATAAATCACGTAGCCATGGGCATCCAATGTATTCTGGTGTACGTGATTTTG
 
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rJMSF043D10+          AGGATTCACTTCCAAATGATAGTTATGGTGGTTCACAGATTGGTGGCGGAAGTAGTTATG
rJMFF034A24+          AGGATTCACTTCCAAATGATAGTTATGGTGGTTCACAGATTGGTGGCGGAAGTAGTTATG
                      ____________________________________________________________
consensus             AGGATTCACTTCCAAATGATAGTTATGGTGGTTCACAGATTGGTGGCGGAAGTAGTTATG
 
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rJMSF043D10+          GACCTTATGGAGTTTACTCCTCTAGCCGTTCTAATAGTGCAGGGTTAGCTAGCCATAACC
rJMFF034A24+          GACCTTATGGAGTTTACTCCTCTAGCCGTTCTAATAGTGCAGGGTTAGCTAGCCATAACC
                      ____________________________________________________________
consensus             GACCTTATGGAGTTTACTCCTCTAGCCGTTCTAATAGTGCAGGGTTAGCTAGCCATAACC
 
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rJMSF043D10+          CTGTATCTTATGGCAAGTCTAATGGTTTCTAGAGTTCTTGGGTGTGAGGGCTACAGCTCT
rJMFF034A24+          CTGTATCTTATGGCAAGTCTAATGGTTTCTAGAGTTCTTGGGTGTGAGGGCTACAGCTCT
                      ____________________________________________________________
consensus             CTGTATCTTATGGCAAGTCTAATGGTTTCTAGAGTTCTTGGGTGTGAGGGCTACAGCTCT
 
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rJMSF043D10+          GGTCCATGATGCCTGAGTCAGCCCATGCCCCTTTTGGTGCAGCCTAAGAACAGAAGATGA
rJMFF034A24+          GGTCCATGATGCCTGAGTCAGCCCATGCCCCTTTTGGTGCAGTCTAAGAACAGAAGATGA
                      ____________________________________________________________
consensus             GGTCCATGATGCCTGAGTCAGCCCATGCCCCTTTTGGTGCAGTCTAAGAACAGAAGATGA
 
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rJMSF043D10+          ACAGGATACAGAAAGTTGTGGTTGTCTTGCCCATAGCATTGTTGGTTTTTAGGAGTTGTG
rJMFF034A24+          ACAGGATACAGAAAGTTGTGGTTGTCTTGCCCATAGCATTGTTGGTTTTTAGGAGTTGTG
                      ____________________________________________________________
consensus             ACAGGATACAGAAAGTTGTGGTTGTCTTGCCCATAGCATTGTTGGTTTTTAGGAGTTGTG
 
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rJMSF043D10+          GTCATCTTGCCCAGTTTTATACTTTTATATTGTAATGAAACATTTTATCTGGTTGTTTGT
rJMFF034A24+          GTCATCTTGCCCAGTTTTATACTTTTATATTGTAATGAAACATTTTATCTGGTTGTTTGT
                      ____________________________________________________________
consensus             GTCATCTTGCCCAGTTTTATACTTTTATATTGTAATGAAACATTTTATCTGGTTGTTTGT
 
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rJMSF043D10+          GGCCTTGTACCTGATACCTTTAGGTTCTTTGGTTTCATAAACCAGTGCCAAAGCATTTAC
rJMFF034A24+          GGCCTTGTACCTGATACCTTTAGGTTCTTTGGTTTCATAAACCAGTGCCAAAGCATTTAC
                      ____________________________________________________________
consensus             GGCCTTGTACCTGATACCTTTAGGTTCTTTGGTTTCATAAACCAGTGCCAAAGCATTTAC
 
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rJMSF043D10+          GTGTAATTTAGCACTAC                                           
rJMFF034A24+          GTGTAATTTAGCACTACCTTGATCGTCTTTTTTAATTCTTTNGAATCTTATGCAAGTCGT
                      ____________________________________________________________
consensus             GTGTAATTTAGCACTACCTTGATCGTCTTTTTTAATTCTTTNGAATCTTATGCAAGTCGT