Contig 011108:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032M23Sequence618015275ref|XP_009774717.1|3e-107PREDICTED: protein kinase APK1A, chloroplastic-like [Nicotiana sylvestris] ref|321011108 (2)
JMSF024L01Sequence656006404 (6)emb|CDP13602.1|4e-83unnamed protein product [Coffea canephora]690011108 (2)gb|ABK93253.1|1e-69unknown [Populus trichocarpa]

Alignment

This contig is upended


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rJMSF024L01+                                                CAACGAGGGTAATGGGCACTTA
                      ____________________________________________________________
consensus                                                   CAACGAGGGTAATGGGCACTTA
 
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rJMSF024L01+          TGGATATGCAGCTCCCGAATACTTAGCCACTGGTCATTTGACTACCAGGAGCGATGTGTA
                      ____________________________________________________________
consensus             TGGATATGCAGCTCCCGAATACTTAGCCACTGGTCATTTGACTACCAGGAGCGATGTGTA
 
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rJMSF024L01+          TAGTTTTGGAGTTGTTCTTCTTGAAATGCTATCAGGTCGAAGAGCAATCGACAAGAATAG
                      ____________________________________________________________
consensus             TAGTTTTGGAGTTGTTCTTCTTGAAATGCTATCAGGTCGAAGAGCAATCGACAAGAATAG
 
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rJMSF024L01+          ACCATCGGGAGAACACAACCTGGTAGAATGGGCTAAACCGTACTTGGCTATCAAACGTAA
                      ____________________________________________________________
consensus             ACCATCGGGAGAACACAACCTGGTAGAATGGGCTAAACCGTACTTGGCTATCAAACGTAA
 
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rJMSF024L01+          AGTCCACCGAGTTGTGGATAACCGTCTTGAAGGGCAGTATTCACTGGATGTCGCCCAGAA
                      ____________________________________________________________
consensus             AGTCCACCGAGTTGTGGATAACCGTCTTGAAGGGCAGTATTCACTGGATGTCGCCCAGAA
 
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rJMSF024L01+          AGTAGCTTTTATTGCCTTGCGGTGCCTATCCACCGATGCTAGGATTAGGCCTACCATGGA
                      ____________________________________________________________
consensus             AGTAGCTTTTATTGCCTTGCGGTGCCTATCCACCGATGCTAGGATTAGGCCTACCATGGA
 
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rJMSF024L01+          CGACGTGGTTAGAGAACTGGAGAAGCTTAACGAGACTCGGGATATGGAAAACACCACCGG
                      ____________________________________________________________
consensus             CGACGTGGTTAGAGAACTGGAGAAGCTTAACGAGACTCGGGATATGGAAAACACCACCGG
 
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rJMSF024L01+          CAAGCCCACTGGCAATGGTTCTAGACTTCGCAGACGAAGTACTGGTGATGCTGCCCGTTT
                      ____________________________________________________________
consensus             CAAGCCCACTGGCAATGGTTCTAGACTTCGCAGACGAAGTACTGGTGATGCTGCCCGTTT
 
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rJMSF024L01+          AAACTCGCAAGTTTCATTTCCAAAACAATCTGCTTCTTCCCTCTTGCCAAACATGTCGCT
rJMFF032M23+                                                 CCTCTTGCCAAACATGTCGCT
                      ____________________________________________________________
consensus             AAACTCGCAAGTTTCATTTCCAAAACAATCTGCTTCTTCCCTCTTGCCAAACATGTCGCT
 
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rJMSF024L01+          GAAAACATCTGCTTGAGATCGATTTTCTGACTATACGATATGCACAATGTTGAAGATGAA
rJMFF032M23+          GAAAACATGTGCTTGAGATCGATTTTCTGACTATACGATATGCACAATGTTGAAGATGAA
                      ____________________________________________________________
consensus             GAAAACATGTGCTTGAGATCGATTTTCTGACTATACGATATGCACAATGTTGAAGATGAA
 
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rJMSF024L01+          CCCTCCATTGATGAAAGGACTAACAGGTTAAGAATTACTTCTATCAGATTTAAGTCCTGT
rJMFF032M23+          CCCTCCATTGATGAAAGAACTAACAGGTTAAGAATTACTTCTATCAGATTTAAGTCCTGT
                      ____________________________________________________________
consensus             CCCTCCATTGATGAAAGGACTAACAGGTTAAGAATTACTTCTATCAGATTTAAGTCCTGT
 
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rJMSF024L01+          AAATAGAATAATAGACTTTACAGATCAGTTAGAGTGTAATGTATCTATCAGATATGGGAT
rJMFF032M23+          AAATAGAATAATAGACTTTACAGATCAGTTAGAGTGTAATGTATCTATCAGATATGGGAT
                      ____________________________________________________________
consensus             AAATAGAATAATAGACTTTACAGATCAGTTAGAGTGTAATGTATCTATCAGATATGGGAT
 
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rJMSF024L01+          CTCTCTCT                                                    
rJMFF032M23+          CTCTCTCTTTTTGCCTCAATTTCACACACTTGAAAAGAGCATTTGTGCACGGGTGGATGT
                      ____________________________________________________________
consensus             CTCTCTCTTTTTGCCTCAATTTCACACACTTGAAAAGAGCATTTGTGCACGGGTGGATGT
 
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rJMFF032M23+          TGAATGGGCAAGTTGAAAGACTTTTAGATGATTCATGAGACAAATCATGTGTGTGCTAGA
                      ____________________________________________________________
consensus             TGAATGGGCAAGTTGAAAGACTTTTAGATGATTCATGAGACAAATCATGTGTGTGCTAGA