| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007M04 | Sequence | 603 | 000120 (4) | ref|XP_004248342.1| | 2e-63 | PREDICTED: fasciclin-like arabinogalactan protein 1 [Solanum lycopersicum] | 617 | 011096 (4) | ref|XP_006352538.1| | 2e-45 | PREDICTED: fasciclin-like arabinogalactan protein 1-like [Solanum tuberosum] |
| JMFF022B17 | Sequence | 546 | 000120 (4) | ref|XP_004248342.1| | 1e-71 | PREDICTED: fasciclin-like arabinogalactan protein 1 [Solanum lycopersicum] | 751 | 011096 (4) | ref|XP_009802278.1| | 1e-75 | PREDICTED: fasciclin-like arabinogalactan protein 1 [Nicotiana sylvestris] |
| JMFF030M08 | Sequence | 416 | 000120 (4) | ref|XP_011097758.1| | 7e-44 | PREDICTED: fasciclin-like arabinogalactan protein 1 [Sesamum indicum] | 692 | 011096 (4) | ref|XP_006352538.1| | 3e-64 | PREDICTED: fasciclin-like arabinogalactan protein 1-like [Solanum tuberosum] |
| JMFS161F03 | Sequence | 526 | 011096 (4) | ref|XP_006352538.1| | 1e-27 | PREDICTED: fasciclin-like arabinogalactan protein 1-like [Solanum tuberosum] | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF022B17+ TCCAAGCCAGATGAACCTAACTGCTTGGTATGTCGAGTCATGGCTGCAAAGT
____________________________________________________________
consensus TCCAAGCCAGATGAACCTAACTGCTTGGTATGTCGAGTCATGGCTGCAAAGT
. : . : . : . : . : . :
rJMFF022B17+ GTTTGCCGAGGCTCTGTTGGCTTCCCCTGCTGAGAAGACATATGATGCCAGTGTTACCGG
____________________________________________________________
consensus GTTTGCCGAGGCTCTGTTGGCTTCCCCTGCTGAGAAGACATATGATGCCAGTGTTACCGG
. : . : . : . : . : . :
rJMFF022B17+ TGGATTAACTATATTCTGCCCCGGCGACGACGCTATGAAGAATTTCATGCCGAAATTCAA
____________________________________________________________
consensus TGGATTAACTATATTCTGCCCCGGCGACGACGCTATGAAGAATTTCATGCCGAAATTCAA
. : . : . : . : . : . :
rJMFF022B17+ AAATTTAACGGCGGATGGGAAACAGTCACTGCTGGAGTACCACGGCGTTCCCGTCTACCA
____________________________________________________________
consensus AAATTTAACGGCGGATGGGAAACAGTCACTGCTGGAGTACCACGGCGTTCCCGTCTACCA
. : . : . : . : . : . :
JMFS161F03- CGGATTTGAGGTCAAATAACGGCGAGACGAACACATTGGCTACCGACGGCGG
rJMFF022B17+ TTCGCTGTCGGATTTGAGGTCAAATAACGGCGAGACGAACACATTGGCTACCGACGGCGG
rJMFF007M04+ CGGATTTGAGGTCAAATAACGGCGAGCCGAACACATTGGCTNCCGNCGGCGG
rJMFF030M08+ CGGATTTGAGGTCAAATAACGGCGAGACGAACACATTGGCTACCGACGGCGG
____________________________________________________________
consensus TTCGCTGTCGGATTTGAGGTCAAATAACGGCGAGACGAACACATTGGCTACCGACGGCGG
. : . : . : . : . : . :
JMFS161F03- TAAGAAGTTCGGCTTCACAGTCCAAAACGACGGCGACGTCGTGACATTGAAGACGAAGAT
rJMFF022B17+ TAAGAAGTTCGGCTTCACAGTCCAAAACGACGGCGACGTCGTGACATTGAAGACGAAGAT
rJMFF007M04+ TAAGAAGTTCGNCTTCACAGTCCAAAACGACGGCGACGTCGTGACATTGAAGACGAAGAT
rJMFF030M08+ TAAGAAGTTCGGCTTCACAGTCCAAAACGACGGCGACGTCGTGACATTGAAGACGAAGAT
____________________________________________________________
consensus TAAGAAGTTCGGCTTCACAGTCCAAAACGACGGCGACGTCGTGACATTGAAGACGAAGAT
. : . : . : . : . : . :
JMFS161F03- TGTGACCGCGAAAATCACGGGAACGTTGCTGGATGAACAGCCGGTGGCGATTTTTACTCT
rJMFF022B17+ TGTGACCGCGAAAATCACGGGAACGTTGCTGGATGAACAGCCGGTGGCGATTTTTACTCT
rJMFF007M04+ TGTGACCGCGAAAATCACGGGAACGTTGCTGGATGAACAGCCGGTGGCGATTTTTACTCT
rJMFF030M08+ TGTGACCGCGAAAATCACGGGAACGTTGCTGGATGAACAGCCGGTGGCGATTTTTACTCT
____________________________________________________________
consensus TGTGACCGCGAAAATCACGGGAACGTTGCTGGATGAACAGCCGGTGGCGATTTTTACTCT
. : . : . : . : . : . :
JMFS161F03- TGACAAAGTCTTAATGCCGAAGGAGCTGTTCAAGGCAACTGATTCCCCGACCCCTGCTCC
rJMFF022B17+ TGACAAAGTCTTAATGCCGAAGGAGCTGTTCAAGGCAACTGATTCCCCGACCCCTGCTCC
rJMFF007M04+ TGACAAAGTCTTAATGCCGAAGGAGCTGTTCAAGGCAACTGATTCCCCGACCCNTGCTCC
rJMFF030M08+ TGACAAAGTCTTAATGCCGAAGGAGCTGTTCAAGGCAACTGATTCCCCGACCCCTGCTCC
____________________________________________________________
consensus TGACAAAGTCTTAATGCCGAAGGAGCTGTTCAAGGCAACTGATTCCCCGACCCCTGCTCC
. : . : . : . : . : . :
JMFS161F03- AGCTCCGGGACCGGACGCCGACGCAGAGTCTCCCAAGCCTGCTAAGAGGCACAAGTCAAA
rJMFF022B17+ AGCTCCGGGACCGGACGCCGACGCAGAGTCTCCCAAGCCTGCTAAGAGGCACAAGTCAAA
rJMFF007M04+ AGCTCCGGGACCGGACGCNGANGCAGAGTCTCCCAAGCNTGGTAAGAGGCACAAGTCAAA
rJMFF030M08+ AGCTCCGGGACCGGACGCCGACGCAGAGTCTCCCAAGCCTGCTAAGAGGCACAAGTCAAA
____________________________________________________________
consensus AGCTCCGGGACCGGACGCCGACGCAGAGTCTCCCAAGCCTGCTAAGAGGCACAAGTCAAA
. : . : . : . : . : . :
JMFS161F03- GTCACCGTCACCGTTACCATCCGATGCTCCGTCAGACTCCCCGGCGGATGCTCCGGACAG
rJMFF022B17+ GTCACCGTCACCGTTACCATCCGATGCTCCGTCAGACTCCCCGGCGGATGCTCCGGACAG
rJMFF007M04+ GTCACCGTCACCGTTACCATCCGATGNTCCGTCAGACTCCCCGGCGGATGCTCCGGACAG
rJMFF030M08+ GTCACCGTCACCGTTACCATCCGATGCTCCGTCAGACTCCCCGGCGGATGCTCCGGACAG
____________________________________________________________
consensus GTCACCGTCACCGTTACCATCCGATGCTCCGTCAGACTCCCCGGCGGATGCTCCGGACAG
. : . : . : . : . : . :
JMFS161F03- TGATT
rJMFF022B17+ TGATTCTGACGATCAGACGGCAGACGACAACGGCGCCATTAGGTTCAACGGCGGAAGATT
rJMFF007M04+ TGATTNTGACGATCAGACGGCAGACGACANCGGCGCCATTAGGTTCAACGGCGGAAGATT
rJMFF030M08+ TGATTCTGACGATCAGACGGCAGACGACAACGGCGCCATTAGGTTCAACGGCGGAAGATT
____________________________________________________________
consensus TGATTCTGACGATCAGACGGCAGACGACAACGGCGCCATTAGGTTCAACGGCGGAAGATT
. : . : . : . : . : . :
rJMFF022B17+ TGTCGCAATGGTTTTAAGTCTG-TGTGTTGCCTTTTCACTTGAGCAAGCTTTCTTTTAGG
rJMFF007M04+ TGTCGCAATGGTTTTAAGTCTGCTGTGTTGCCTTTTCACNTGAGCAAGCTTTCTTTTAGG
rJMFF030M08+ TGTCGCAATGGTTTTAAGTCTG-TGTGTTGCCTTTTCACTTGAGCAAGCTTTCTTTTAGG
____________________________________________________________
consensus TGTCGCAATGGTTTTAAGTCTG-TGTGTTGCCTTTTCACTTGAGCAAGCTTTCTTTTAGG
. : . : . : . : . : . :
rJMFF022B17+ GTCAAAAGTTTAAATATGATAAATCAGTGTAATGAGTAGT
rJMFF007M04+ GTCAAAAGTTTAAATATGATAAATCAGTGTAATGAGTAGT
rJMFF030M08+ GTCAAAGGTTTAAATATGATAAATCAGTGTAATGAGTAGTGGACTTATGGCATCCTATCT
____________________________________________________________
consensus GTCAAAAGTTTAAATATGATAAATCAGTGTAATGAGTAGTGGACTTATGGCATCCTATCT