Contig 011090:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029G04Sequence577011090 (3)ref|XP_006349362.1|1e-14PREDICTED: E3 ubiquitin-protein ligase RNF170-like isoform X2 [Solanum tuberosu693011090 (3)
JMSF006F17Sequence409011090 (3)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF029G04- AGAGCCATACCGCAATACCAATGACCGCAGGGGCCGCGGCAGGGGACGACGA
                      ____________________________________________________________
consensus AGAGCCATACCGCAATACCAATGACCGCAGGGGCCGCGGCAGGGGACGACGA
 
. : . : . : . : . : . :
JMFF029G04- AATTGCTGAAGCATATAGGGCAGCAATCGTCACTAGGAGGGCTATCCATCCTCGCACTCA
                      ____________________________________________________________
consensus AATTGCTGAAGCATATAGGGCAGCAATCGTCACTAGGAGGGCTATCCATCCTCGCACTCA
 
. : . : . : . : . : . :
JMFF029G04- TCGCAGTTCCCGCCTCCTTGTTCTCCCTAGCAACCGCGCTCATCGACAAGGAGGCTGAAT
rJMFF029G04+ TAGCAACCGCGCTCATCGACAAGGAGGCTGAAT
                      ____________________________________________________________
consensus TCGCAGTTCCCGCCTCCTTGTTCTCCCTAGCAACCGCGCTCATCGACAAGGAGGCTGAAT
 
. : . : . : . : . : . :
JMFF029G04- CATCACCATCCGCATTCCTCTGACCAGAAGCCGACGCGGTTATCCACTCCGCTGACTCGC
rJMFF029G04+ CATCACCATCCGCATTCCTCTGACCAGAAGCCGACGCGGTTATCCACTCCGCTGACTCGC
                      ____________________________________________________________
consensus CATCACCATCCGCATTCCTCTGACCAGAAGCCGACGCGGTTATCCACTCCGCTGACTCGC
 
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JMFF029G04- CGCGAAACGGCGATATTTCTTCGCCTCCATCCTCCTCCACCTCTCCACCGTTCGCTGATT
JMSF006F17+ CCTCTCCACCGTTCGNTGATT
rJMFF029G04+ CGCGAAACGGCGATATTTCTTCGCCTCCATCCTCCTCCACCTCTCCACCGTTCGCTGATT
                      ____________________________________________________________
consensus CGCGAAACGGCGATATTTCTTCGCCTCCATCCTCCTCCACCTCTCCACCGTTCGCTGATT
 
. : . : . : . : . : . :
JMFF029G04- CGTAACTGCTCACTTCCTCCTCAGTCCTCCCCGATGCGGATTCGCGGAGCTCCGATGAAT
JMSF006F17+ CGTAACTGCTCACTTCCTCCTCAGTCCTCCCCGATGCGGATTCGCGGAGCTCCGATGAAT
rJMFF029G04+ CGTAACTGCTCACTTCCTCCTCAGTCCTCCCCGATGCGGATTCGCGGAGCTCCGATGAAT
                      ____________________________________________________________
consensus CGTAACTGCTCACTTCCTCCTCAGTCCTCCCCGATGCGGATTCGCGGAGCTCCGATGAAT
 
. : . : . : . : . : . :
JMFF029G04- ACGAAGGATTCGTGGCTTCGCTAGTACTAGTGCTCGCAGCGACGGAGGAATTGTCACGAT
JMSF006F17+ ACGAAGGATTCGTGGCTTCGCTAGTACTAGTGCTCGCAGCGACGGAGGAATTGTCACGAT
rJMFF029G04+ ACGAAGGATTCGTGGCTTCGCTAGTACTAGTGCTCGCAGCGACGGAGGAATTGTCACGAT
                      ____________________________________________________________
consensus ACGAAGGATTCGTGGCTTCGCTAGTACTAGTGCTCGCAGCGACGGAGGAATTGTCACGAT
 
. : . : . : . : . : . :
JMFF029G04- TAGGGTTCTGATGAAGGTGATGGTGTCGGTGAGAGCTCGGAAGATTGAAGAAGAACCTCT
JMSF006F17+ TAGGGTTCTGATGAAGGTGATGGTGTCGGTGAGAGCTCGGAAGATTGAAGAAGAACCTCT
rJMFF029G04+ TAGGGTTCTGATGAAGGTGATGGTGTCGGTGAGAGCTCGGAAGATTGAAGAAGAACCTCT
                      ____________________________________________________________
consensus TAGGGTTCTGATGAAGGTGATGGTGTCGGTGAGAGCTCGGAAGATTGAAGAAGAACCTCT
 
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JMFF029G04- TCATCCCAGTACTGATTATTGCAGCGTGTCCCGAATCCCTCGTGTGTCAAAACCAGAAAG
JMSF006F17+ TCATCCCAGTACTGATTATTGCAGCGTGTCCCGAATCCCTCGTGTGTCAAAACCAGAAAG
rJMFF029G04+ TCATCCCAGTACTGATTATTGCAGCGTGTCCCGAATCCCTCGTGTGTCAAAACCAGAAAG
                      ____________________________________________________________
consensus TCATCCCAGTACTGATTATTGCAGCGTGTCCCGAATCCCTCGTGTGTCAAAACCAGAAAG
 
. : . : . : . : . : . :
JMFF029G04- CTTCGAGCCTCCAGGGGGTTTGATCGCAAATAGAGTTTATACAGA
JMSF006F17+ CTTCGAGCCTCCAGGGGGTTTGATCGCAAATAGAGTTTATACAGAGAGAAGAAAGTACTC
rJMFF029G04+ CTTCGAGCCTCCAGGGGGTTTGATCGCAAATAGAGTTTATACAGAGAGAAGAAAGTACTC
                      ____________________________________________________________
consensus CTTCGAGCCTCCAGGGGGTTTGATCGCAAATAGAGTTTATACAGAGAGAAGAAAGTACTC
 
. : . : . : . : . : . :
JMSF006F17+ CGTAAACACTAAGAAGAGAGAGAAAGCTGTACAGAGAGAGAAAGAAGAAGGATCGAAAGA
rJMFF029G04+ CGTAAACACTAAGAAGAGAGAGAAAGCTGTACAGAGAGAGAAAGAAGAAGGATCGAAAGA
                      ____________________________________________________________
consensus CGTAAACACTAAGAAGAGAGAGAAAGCTGTACAGAGAGAGAAAGAAGAAGGATCGAAAGA
 
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JMSF006F17+ TGGAGAATGGAGACGAAAGGATGACGT
rJMFF029G04+ TGGAGAATGGAGACGAAAGGATGACGTGTTTAGCGGATGATCCTGTAAGTCCGAGTCAAG
                      ____________________________________________________________
consensus TGGAGAATGGAGACGAAAGGATGACGTGTTTAGCGGATGATCCTGTAAGTCCGAGTCAAG
 
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rJMFF029G04+ ACAAAACGTCGCCAGCCTGCCAGGTATTCCCTCAGTGGGGGGCCCTCTCCTTGTTTATCT
                      ____________________________________________________________
consensus ACAAAACGTCGCCAGCCTGCCAGGTATTCCCTCAGTGGGGGGCCCTCTCCTTGTTTATCT
 
. : . : . : . : . : . :
rJMFF029G04+ TTCTCAATCACTACACAATCTTTATTGCGTGAACCGTTAGATTACGGTCCAATAAACATA
                      ____________________________________________________________
consensus TTCTCAATCACTACACAATCTTTATTGCGTGAACCGTTAGATTACGGTCCAATAAACATA