| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007O20 | Sequence | 520 | 009259 (5) | gb|KDO70851.1| | 3e-07 | hypothetical protein CISIN_1g0074091mg, partial [Citrus sinensis] gb|KDO70852.1| | 826 | 011048 (3) | ref|XP_009780774.1| | 3e-108 | PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Nicotiana sylv |
| JMFF020H07 | Sequence | 551 | 009259 (5) | ref|XP_003521518.1| | 2e-12 | PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Glycine max] g | 750 | 011048 (3) | ref|XP_009780774.1| | 7e-108 | PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Nicotiana sylv |
| JMSF013P10 | Sequence | 314 | 009259 (5) | 755 | 011048 (3) | ref|XP_009594545.1| | 2e-101 | PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Nicotiana tome | |||
This contig is upended
. : . : . : . : . : . :
rJMFF007O20+ GTCTAGTTAAGGATAATGTGGCACTTATAGCGNTCCTGGAAGCAAA
____________________________________________________________
consensus GTCTAGTTAAGGATAATGTGGCACTTATAGCGNTCCTGGAAGCAAA
. : . : . : . : . : . :
rJMFF007O20+ GTTCAGTAACCCAGGGAGTTGATAACCCCTGGAAAGCGTCAGCTTGTTTGTGTGGCAAAT
rJMSF013P10+ GGCAAAT
rJMFF020H07+ AGCGTCAGCTTGTTTGTGTGGCAAAT
____________________________________________________________
consensus GTTCAGTAACCCAGGGAGTTGATAACCCCTGGAAAGCGTCAGCTTGTTTGTGTGGCAAAT
. : . : . : . : . : . :
rJMFF007O20+ ACTCATGTGAATGTTCAACAAGAGTTGAAGGATGTCAAGCTTTGGCAGGTTCATACACTT
rJMSF013P10+ ACTCATGTGAATGTTCAACAAGAGTTGAAGGATGTCAAGCTTTGGCAGGTTCATACACTT
rJMFF020H07+ ACTCATGTGAATGTTCAACAAGAGTTGAAGGATGTCAAGCTTTGGCAGGTTCATACACTT
____________________________________________________________
consensus ACTCATGTGAATGTTCAACAAGAGTTGAAGGATGTCAAGCTTTGGCAGGTTCATACACTT
. : . : . : . : . : . :
rJMFF007O20+ CTGAAAGGACTGGAAAAGATTGCTGCAAGTGCCGATATTCCAATGTTGGTCTGTGGTGAT
rJMSF013P10+ CTGAAAGGACTGGAAAAGATTGCTGCAAGTGCCGATATTCCAATGTTGGTCTGTGGTGAT
rJMFF020H07+ CTGAAAGGACTGGAAAAGATTGCTGCAAGTGCCGATATTCCAATGTTGGTCTGTGGTGAT
____________________________________________________________
consensus CTGAAAGGACTGGAAAAGATTGCTGCAAGTGCCGATATTCCAATGTTGGTCTGTGGTGAT
. : . : . : . : . : . :
rJMFF007O20+ TTTAATTCAGTACCTGGAAGCGCTCCTCATTCACTCCTTGCAGCTGGGAAAGTTGATCCA
rJMSF013P10+ TTTAATTCAGTACCTGGAAGCGCTCCTCATTCACTCCTTGCAGCTGGGAAAGTTGATCCA
rJMFF020H07+ TTTAATTCAGTACCTGGAAGCGCTCCTCATTCACTCCTTGCAGCTGGGAAAGTTGATCCA
____________________________________________________________
consensus TTTAATTCAGTACCTGGAAGCGCTCCTCATTCACTCCTTGCAGCTGGGAAAGTTGATCCA
. : . : . : . : . : . :
rJMFF007O20+ TTGCATCCAGATCTACAAGTTGACCCTCTTGGTATTCTGCGTCCTACAACCAAGTTAACG
rJMSF013P10+ TTGCATCCAGATCTACAAGTTGACCCTCTTGGTATTCTGCGTCCTACAACCAAGTTAACG
rJMFF020H07+ TTGCATCCAGATCTACAAGTTGACCCTCTTGGTATTCTGCGTCCTACAACCAAGTTAACG
____________________________________________________________
consensus TTGCATCCAGATCTACAAGTTGACCCTCTTGGTATTCTGCGTCCTACAACCAAGTTAACG
. : . : . : . : . : . :
rJMFF007O20+ CATCACCTGCCATTGGTGAGTGCTTACTCGGCCATTGGTAGACTTGGGGTAGGTCTTGGG
rJMSF013P10+ CATCACCTGCCATTGGTGAGTGCTTACTCGGCCATTGGTAGACTTGGGGTAGGTCTTGGG
rJMFF020H07+ CATCACCTGCCATTGGTGAGTGCTTACTCGGCCATTGGTAGACTTGGGGTAGGTCTTGGG
____________________________________________________________
consensus CATCACCTGCCATTGGTGAGTGCTTACTCGGCCATTGGTAGACTTGGGGTAGGTCTTGGG
. : . : . : . : . : . :
rJMFF007O20+ TTTGAGCTACAGAGGAGGCGAATTGATCCCACTACGAATGAACCCCTATTTACTAATTGC
rJMSF013P10+ TTTGAGCTACAGAGGAGGCGAATTGATCCCACTACGAATGAACCCCTATTTACTAATTGC
rJMFF020H07+ TTTGAGCTACAGAGGAGGCGAATTGATCCCACTACGAATGAACCCCTATTTACTAATTGC
____________________________________________________________
consensus TTTGAGCTACAGAGGAGGCGAATTGATCCCACTACGAATGAACCCCTATTTACTAATTGC
. : . : . : . : . : . :
rJMFF007O20+ ACTAGGGACTTTATTGGTACCCACGATTATATATTCTACTCAGCGGACTCGTTAACTATT
rJMSF013P10+ ACTAGGGACTTTATTGGTACCCACGATTATATATTCTACTCAGCGGACTCGTTAACTATT
rJMFF020H07+ ACTAGGGACTTTATTGGTACCCACGATTATATATTCTACTCAGCGGACTCGTTAACTATT
____________________________________________________________
consensus ACTAGGGACTTTATTGGTACCCACGATTATATATTCTACTCAGCGGACTCGTTAACTATT
. : . : . : . : . : . :
rJMFF007O20+ GAATCTATGTTGGAGCTCTTGGATGAGGATAGCTTGAGAAAAGACACGGCGCTTCCTTCT
rJMSF013P10+ GAATCTATGTTGGAGCTCTTGGATGAGGATAGCTTGAGAAAAGACACGGCGCTTCCTTCT
rJMFF020H07+ GAATCTATGTTGGAGCTCTTGGATGAGGATAGCTTGAGAAAAGACACGGCGCTTCCTTCT
____________________________________________________________
consensus GAATCTATGTTGGAGCTCTTGGATGAGGATAGCTTGAGAAAAGACACGGCGCTTCCTTCT
. : . : . : . : . : . :
rJMFF007O20+ CCAGAGTGGTCGTCTGATCATATAGCACTCCTAGCCGAGTTTCATTGCAAGTCTAGAACT
rJMSF013P10+ CCAGAGTGGTCGTCTGATCATATAGC
rJMFF020H07+ CCAGAGTGGTCGTCTGATCATATAGCACTCCTAGCCGAGTTTCATTGCAAGTCTAGAACT
____________________________________________________________
consensus CCAGAGTGGTCGTCTGATCATATAGCACTCCTAGCCGAGTTTCATTGCAAGTCTAGAACT
. : . : . : . : . : . :
rJMFF007O20+ AAACACTGACAACTAGTGTCGTTTTGCTGTAGGCATTGCAGAATAGAAGCAGAAACAAGT
rJMFF020H07+ AAACACTGACAACTAGTGTCGTTTTGCTGTAGGCATTGCAGAATAGAAGCAGAAACAAGT
____________________________________________________________
consensus AAACACTGACAACTAGTGTCGTTTTGCTGTAGGCATTGCAGAATAGAAGCAGAAACAAGT
. : . : . : . : . : . :
rJMFF007O20+ GAAAAAGGATTTTACAGATTAAGTGATTGTAAGAATAGTAGATCCCTTTCCAGGGCGGCC
rJMFF020H07+ GAAAAAGGATTTTACAGATTAAGTGATTGTAAGAATAGTAGATCCCTTTCCAGGGCGGCC
____________________________________________________________
consensus GAAAAAGGATTTTACAGATTAAGTGATTGTAAGAATAGTAGATCCCTTTCCAGGGCGGCC
. : . : . : . : . : . :
rJMFF007O20+ ACCACAGATGTTCATCCTTGTATTATGATCTATCTACCACCTTGTCCCATAGAAAAAAT
rJMFF020H07+ ACCACAGATGTTCATCCTTGTATTATGATCTATCTACCACCTTGTCCCATAGAAAAAATG
____________________________________________________________
consensus ACCACAGATGTTCATCCTTGTATTATGATCTATCTACCACCTTGTCCCATAGAAAAAATG