Contig 011044:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019A23Sequence415002073 (11)735011044 (10)ref|XP_009603377.1|8e-65PREDICTED: protein UPSTREAM OF FLC isoform X1 [Nicotiana tomentosiformis] ref|XP
JMFF019O04Sequence589002073 (11)ref|XP_009603382.1|2e-44PREDICTED: protein UPSTREAM OF FLC isoform X3 [Nicotiana tomentosiformis]759011044 (10)emb|CBI17136.3|1e-52unnamed protein product [Vitis vinifera]
JMSF004I04Sequence281002073 (11)268011044 (10)
JMSF011A24Sequence249002073 (11)766011044 (10)emb|CBI17136.3|7e-60unnamed protein product [Vitis vinifera]
JMSF020G23Sequence621002073 (11)ref|XP_009603377.1|4e-34PREDICTED: protein UPSTREAM OF FLC isoform X1 [Nicotiana tomentosiformis] ref|XP780011044 (10)ref|XP_009603377.1|8e-87PREDICTED: protein UPSTREAM OF FLC isoform X1 [Nicotiana tomentosiformis] ref|XP
JMSF030F05Sequence459002073 (11)747011044 (10)emb|CBI17136.3|2e-54unnamed protein product [Vitis vinifera]
JMSF042F21Sequence786002073 (11)ref|XP_009603382.1|2e-85PREDICTED: protein UPSTREAM OF FLC isoform X3 [Nicotiana tomentosiformis]789011044 (10)ref|XP_009603377.1|3e-66PREDICTED: protein UPSTREAM OF FLC isoform X1 [Nicotiana tomentosiformis] ref|XP
JMSF044F20Sequence759002073 (11)ref|XP_009603382.1|6e-22PREDICTED: protein UPSTREAM OF FLC isoform X3 [Nicotiana tomentosiformis]745011044 (10)emb|CBI17136.3|1e-43unnamed protein product [Vitis vinifera]
JMSF048L23Sequence619002073 (11)661011044 (10)ref|XP_009603377.1|9e-65PREDICTED: protein UPSTREAM OF FLC isoform X1 [Nicotiana tomentosiformis] ref|XP
JMSF049M08Sequence685002073 (11)ref|XP_009603382.1|4e-18PREDICTED: protein UPSTREAM OF FLC isoform X3 [Nicotiana tomentosiformis]699011044 (10)ref|XP_009603377.1|6e-66PREDICTED: protein UPSTREAM OF FLC isoform X1 [Nicotiana tomentosiformis] ref|XP

Alignment

This contig is upended


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rJMSF020G23+           GAAGGATCACAGTTTTGGCCTTATCCCAATGTACAAGCCGAGATTTTCGCATTCCAAAT
                      ____________________________________________________________
consensus              GAAGGATCACAGTTTTGGCCTTATCCCAATGTACAAGCCGAGATTTTCGCATTCCAAAT
 
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rJMSF048L23+                               CCTCATTAACCTTGGGAGAACTCGATTGCCTGACCGAAA
rJMSF020G23+          TCCCATCCCCACTATTCTCAACCTCATTAACCTTGGGAGAACTCGATTGCCTGACCGAAA
rJMFF019A23+                                 TCATTAACCTTGGGAGAACTCGATTGCCTGACCGAAA
rJMSF049M08+                               CCTCATTAACCTTGGGAGAACTCGATTGCCTGACCGAAA
rJMSF042F21+                               CCTCATTAACCTTGGGAGAACTCGATTGCCTGACCGAAA
rJMSF011A24+                                                         TGCCTGACCGNAA
                      ____________________________________________________________
consensus             TCCCATCCCCACTATTCTCAACCTCATTAACCTTGGGAGAACTCGATTGCCTGACCGAAA
 
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rJMSF048L23+          ATCCTAGACTAATGGGTCTGAGGTTAGAAGATAAGGAGTATTTCAGCGGGAGTTTGATCG
rJMSF020G23+          ATCCTAGACTAATGGGTCTGAGGTTAGAAGATAAGGAGTATTTCAGCGGGAGTTTGATCG
rJMSF030F05+                        GGTCTGAGGTTAGAAGATAAGGAGTATTTCAGCGGGAGTTTGATCG
rJMFF019A23+          ATCCTAGACTAATGGGTCTGAGGTTAGAAGATAAGGAGTATTTCAGCGGGAGTTTGATCG
rJMSF044F20+                               GGTTAGAAGATAAGGAGTATTTCAGCGGGAGTTTGATCG
rJMSF049M08+          ATCCTAGACTAATGGGTCTGAGGTTAGAAGATAAGGAGTATTTCAGCGGGAGTTTGATCG
rJMSF042F21+          ATCCTAGACTAATGGGTCTGAGGTTAGAAGATAAGGAGTATTTCAGCGGGAGTTTGATCG
rJMSF011A24+          ATCCTAGACTAATGGGTCTGAGGTTAGAAGATAAGGAGTATTTCAGCGGGAGTTTGATCG
rJMFF019O04+                            TGAGGTTAGAAGATAAGGAGTATTTCAGCGGGAGTTTGATCG
                      ____________________________________________________________
consensus             ATCCTAGACTAATGGGTCTGAGGTTAGAAGATAAGGAGTATTTCAGCGGGAGTTTGATCG
 
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rJMSF048L23+          AGAC-AAATGTGCCCAAAGGAGTAGCTGTTCTTAAACGGTCATCATCATTTAATGCTGAC
rJMSF020G23+          AGAC-AAATGTGCCCAAAGGAGTAGCTGTTCTTAAACGGTCATCATCATTTAATGCTGAC
rJMSF030F05+          AGAC-AAATGTGCCCAAAGGAGTAGCTGTTCTTAAACGGTCATCATCATTTAATGCTGAC
rJMFF019A23+          AGAC-AAATGTGCCCAAAGGAGTAGCTGTTCTTAAACGGTCATCATCATTTAATGCTGAC
rJMSF044F20+          AGACAAAATGTGCCCAAAGGAGTAGCTGTTCTTAAACGGTCATCATCATTTAATGCTGAC
rJMSF049M08+          AGAC-AAATGTGCCCAAAGGAGTAGCTGTTCTTAAACGGTCATCATCATTTAATGCTGAC
rJMSF042F21+          AGAC-AAATGTGCCCAAAGGAGTAGCTGTTCTTAAACGGTCATCATCATTTAATGCTGAC
rJMSF011A24+          AGAC-AAATGTGCCCAAAGGAGTAGCTGTTCTTAAACGGTCATCATCATTTAATGCTGAC
rJMFF019O04+          AGAC-AAATGTGCCCAAAGGAGTAGCTGTTCTTAAACGGTCATCATCATTTAATGCTGAC
                      ____________________________________________________________
consensus             AGAC-AAATGTGCCCAAAGGAGTAGCTGTTCTTAAACGGTCATCATCATTTAATGCTGAC
 
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rJMSF048L23+          AGGACTAATAAGCAGATTGATCCAGTCGAAGACAAAGAGGATGTAAGCTCGACAGGCTCA
rJMSF020G23+          AGGACTAATAAGCAGATTGATCCAGTCGAAGACAAAGAGGATGTAAGCTCGACAGGCTCA
rJMSF030F05+          AGGACTAATAAGCAGATTGATCCAGTCGAAGACAAAGAGGATGTAAGCTCGACAGGCTCA
rJMFF019A23+          AGGACTAATAAGCAGATTGATCCAGTCGAAGACAAAGAGGATGTAAGCTCGACAGGCTCA
rJMSF044F20+          AGGACTAATAAGCAGATTGATCCAGTCGAAGACAAAGAGGATGTAAGCTCGACAGGCTCA
rJMSF049M08+          AGGACTAATAAGCAGATTGATCCAGTCGAAGACAAAGAGGATGTAAGCTCGACAGGCTCA
rJMSF042F21+          AGGACTAATAAGCAGATTGATCCAGTCGAAGACAAAGAGGATGTAAGCTCGACAGGCTCA
rJMSF011A24+          AGGACTAATAAGCAGATTGATCCAGTCGAAGACAAAGAGGATGTAAGCTCGACAGGCTCA
rJMFF019O04+          AGGACTAATAAGCAGATTGATCCAGTCGAAGACAAAGAGGATGTAAGCTCGACAGGCTCA
                      ____________________________________________________________
consensus             AGGACTAATAAGCAGATTGATCCAGTCGAAGACAAAGAGGATGTAAGCTCGACAGGCTCA
 
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rJMSF048L23+          AAGTGCATCCCCCGAGCAATCAAGGTGTCATTGAGTAAGCATCCAAGAAGTGAATCAATG
rJMSF020G23+          AAGTGCATCCCCCGAGCAATCAAGGTGTCATTGAGTAAGCATCCAAGAAGTGAATCAATG
rJMSF030F05+          AAGTGCATCCCCCGAGCAATCAAGGTGTCATTGAGTAAGCATCCAAGAAGTGAATCAATG
rJMFF019A23+          AAGTGCATCCCCCGAGCAATCAAGGTGCCATTGAGTAAGCATCCAAGAAGTGAATCAATG
rJMSF044F20+          AAGTGCATCCCCCGAGCAATCAAGGTGTCATTGAGTAAGCATCCAAGAAGTGAATCAATG
rJMSF049M08+          AAGTGCATCCCCCGAGCAATCAAGGTGTCATTGAGTAAGCATCCAAGAAGTGAATCAATG
rJMSF042F21+          AAGTGCATCCCCCGAGCAATCAAGGTGTCATTGAGTAAGCATCCAAGAAGTGAATCAATG
rJMSF011A24+          AAGTGCATCCCCCGAGCAATCAAGGTGTCATTGAGTAAGCATCCAAGAAGTGAATCAATG
rJMFF019O04+          AAGTGCATCCCCCGAGCGATCAAGGTGTCATTGAGTAAGCATCCAAGAAGTGAATCAATG
                      ____________________________________________________________
consensus             AAGTGCATCCCCCGAGCAATCAAGGTGTCATTGAGTAAGCATCCAAGAAGTGAATCAATG
 
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rJMSF048L23+          AGATCTCCAATTTCCGAGGGTCCAAGAATCTCATCCGAAGGATCATCAGAGAACCCACAA
rJMSF020G23+          AGATCTCCAATTTCCGAGGGTCCAAGAATCTCATCCGAAGGATCATCAGAGAACCCACAA
rJMSF030F05+          AGATCTCCAATTTCCGAGGGTCCAAGAATCTCATCCGAAGGATCATCAGAGAACCCACAA
rJMFF019A23+          AGATCTCCAATTTCCGAGGGTCCAAGAATCTCATCCGAAGGATCATCAGAGAACCCACAA
rJMSF044F20+          AGATCTCCAATTTCCGAGGGTCCAAGAATCTCATCCGAAGGATCATCAGAGAACCCACAA
rJMSF049M08+          AGATCTCCAATTTCCGAGGGTCCAAGAATCTCATCCGAAGGATCATCAGAGAACCCACAA
rJMSF042F21+          AGATCTCCAATTTCCGAGGGTCCAAGAATCTCATCCGAAGGATCATCAGAGAACCCACAA
rJMSF011A24+          AGATCTCCAATTTCCGAGGGTCCAAGAATCTCATCCGAAGGATCATCAGAGAACCCACAA
rJMFF019O04+          AGATCTCCAATTTCCGAGGGTCCAAGAATCTCATCCGAAGGATCATCAGAGAACCCACAA
                      ____________________________________________________________
consensus             AGATCTCCAATTTCCGAGGGTCCAAGAATCTCATCCGAAGGATCATCAGAGAACCCACAA
 
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rJMSF048L23+          GCCATCACATTTGACACGTCAACAGGAGGAAGC---AGAATCACGGAGCCTACCTCGGGA
rJMSF020G23+          GCCATCACATTTGACACGTCAACAGGAGGAAGCAGGAGAATCACGGAGCCTACCTCGGGA
rJMSF030F05+          GCCATCACATTTGACACGTCAACAGGAGGAAGCAGGAGAATCACGGAGCCTACCTCGGGA
rJMFF019A23+          GCCATCACATTTGACACGTCAACAGGAGGAAGCAGGAGAATCACGGAGCCTACCTCGGGA
rJMSF044F20+          GCCATCACATTTGACACGTCAACAGGAGGAAGCAGGAGAATCACGGAGCCTACCTCGGGA
rJMSF049M08+          GCCATCACATTTGACACGTCAACAGGAGGAAGCAGGAGAATCACGGAGCCTACCTCGGGA
rJMSF042F21+          GCCATCACATTTGACACGTCAACAGGAGGAAGCAGGAGAATCACGGAGCCTACCTCGGGA
rJMSF011A24+          GCCATCACATTTGACACGTCAACAGGAGGAAGCAGGAGAATCACGGAGCCTACCTCGGGA
rJMFF019O04+          GCCATCACATTTGACACGTCAACAGGAGGAAGCAGGAGAATCACGGAGCCTACCTCGGGA
                      ____________________________________________________________
consensus             GCCATCACATTTGACACGTCAACAGGAGGAAGCAGGAGAATCACGGAGCCTACCTCGGGA
 
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rJMSF048L23+          AAGAAACAGTCAAAGAGAGCCGAATCTTTCAGGGAGGAGGGGAACGTGATCAAAATTGAA
rJMSF020G23+          AAGAAACAGTCAAAGAGAGCCGAATCTTTCAGGGAGGAGGGGAACGTGATCAAAATTGAA
rJMSF030F05+          AAGAAACAGTCAAAGAGAGCCGAATCTTTCAGGGAGGAGGGGAACGTGATCAAAATTGAA
rJMFF019A23+          AAGAAACAGTCAAAGAGAGCCGAATCTTTCAGGGAGGAGGGGAACGTGATCAAAATTGAA
rJMSF044F20+          AAGAAACAGTCAAAGAGAGCCGAATCTTTCAGGGAGGAGGGGAACGTGATCAAAATTGAA
rJMSF049M08+          AAGAAACAGTCAAAGAGAGCCGAATCTTTCAGGGAGGAGGGGAACGTGATCAAAATTGAA
rJMSF004I04+                                      TCAGGGAGGAGGGGAACGTGATCAAAANNGAA
rJMSF042F21+          AAGAAACAGTCAAAGAGAGCCGAATCTTTCAGGGAGGAGGGGAACGTGATCAAAATTGAA
rJMSF011A24+          AAGAAACAGTCAAAGAGAGCCGAATCTTTCAGGGAGGAGGGGAACGTGATCAAAATTGAA
rJMFF019O04+          AAGAAACAGTCAAAGAGAGCCGAATCTTTCAGGGAGGAGGGGAACGTGATCAAAATTGAA
                      ____________________________________________________________
consensus             AAGAAACAGTCAAAGAGAGCCGAATCTTTCAGGGAGGAGGGGAACGTGATCAAAATTGAA
 
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rJMSF048L23+          GAAAGGCTTGCTTCAGGAGCTCGGGTTATAATACAGTCAAAAGGATCTCCCGACAAGGAG
rJMSF020G23+          GAAAGGCTTGCTTCAGGAGCTCGGGTTATAATACAGTCAAAAGGATCTCCCGACAAGGAG
rJMSF030F05+          GAAAGGCTTGCTTCAGGAGCTCGGGTTATAATACAGTCAAAAGGATCTCCCGACAAGGAG
rJMFF019A23+          GAAAGGCTTGCTTCAGGAGCTCGGGTTATAATACAGTCAAAAGGATCTCCCGACAAGGAG
rJMSF044F20+          GAAAGGCTTGCTTCAGGAGCTCGGGTTATAATACAGTCAAAAGGATCTCCCGACAAGGAG
rJMSF049M08+          GAAAGGCTTGCTTCAGGAGCTCGGGTTATAATACAGTCAAAAGGATCTCCCGACAAGGAG
rJMSF004I04+          GAAAGGCTTGNTTCAGGNGCTCGGGTTATAATACAGTCNNAAGGATCTCCCGACAAGGAG
rJMSF042F21+          GAAAGGCTTGCTTCAGGAGCTCGGGTTATAATACAGTCAAAAGGATCTCCCGACAAGGAG
rJMSF011A24+          GAAAGGCTTGCTTCAGGAGCTCGGGTTATAATACAGTCAAAAGGATCTCCCGACAAGGAG
rJMFF019O04+          GAAAGGCTTGCTTCAGGAGCTCGGGTTATAATACAGTCAAAAGGATCTCCCGACAAGGAG
                      ____________________________________________________________
consensus             GAAAGGCTTGCTTCAGGAGCTCGGGTTATAATACAGTCAAAAGGATCTCCCGACAAGGAG
 
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rJMSF048L23+          GATATCCCAGCGTGAACTTTGAACAATTTTGAAGGCCGCACCAGTTTTCTTGCGGGGAAT
rJMSF020G23+          GATATCCCAGCGTGAACTTTGAACAATTTTGAAGGCCGCACCAGTTTTCTTGCGGGGAAT
rJMSF030F05+          GATATCCCAGCGTGAACTTTGAACAATTTTGAAGGCCGCACCAGTTTTCTTGCGGGGAAT
rJMFF019A23+          GATATCCCAGCGTGAACTTTGAACAATTTTGAAGGCCGCACCAGTTTTCTTGCGGGGAAT
rJMSF044F20+          GATATCCCAGCGTGAACTTTGAACAATTTTGAAGGCCGCACCAGTTTTCTTGCGGGGAAT
rJMSF049M08+          GATATCCCAGCGTGAACTTTGAACAATTTTGAAGGCCGCACCAGTTTTCTTGCGGGGAAT
rJMSF004I04+          GATATCCCAGCGTGAACTTTGAACANTTTTGAAGGCCGCACCAGTTTTCTTGCGGGGAAT
rJMSF042F21+          GATATCCCAGCGTGAACTTTGAACAATTTTGAAGGCCGCACCAGTTTTCTTGCGGGGAAT
rJMSF011A24+          GATATCCCAGCGTGAACTTTGAACAATTTTGAAGGCCGCACCAGTTTTCTTGCGGGGAAT
rJMFF019O04+          GATATCCCAGCGTGAACTTTGAACAATTTTGAAGGCCGCACCAGTTTTCTTGCGGGGAAT
                      ____________________________________________________________
consensus             GATATCCCAGCGTGAACTTTGAACAATTTTGAAGGCCGCACCAGTTTTCTTGCGGGGAAT
 
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rJMSF048L23+          CAGTAAACTACACTCATTTGCAACTGAATCAACATTTCTTCATTGTAAATCTATGTAAAA
rJMSF020G23+          CAGTAAACTACACTCATTTGCAACTGAATCAACATTTCTTCATTGTAAATCTATGTAAAA
rJMSF030F05+          CAGTAAACTACACTCATTTGCAACTGAATCAACATTTCTTCATTGTAAATCTATGTAAAA
rJMFF019A23+          CAGTAAACTACACTCATTTGCAACTGAATCAACATTTCTTCATTGTAAATCTATGTAAAA
rJMSF044F20+          CAGTAAACTACACTCATTTGCAACTGAATCAACATTTCTTCATTGTAAATCTATGTAAAA
rJMSF049M08+          CAGTAAACTACACTCATTTGCAACTGAATCAACATTTCTTCATTGTAAATCTATGTAAAA
rJMSF004I04+          CAGTAAACTACACTCATTTGCAACTGAATCAACATTTCTTCATTGTAAATCTATGTAAAA
rJMSF042F21+          CAGTAAACTACACTCATTTGCAACTGAATCAACATTTCTTCATTGTAAATCTATGTAAAA
rJMSF011A24+          CAGTAAACTACACTCATTTGCAACTGAATCAACATTTCTTCATTGTAAATCTATGTAAAA
rJMFF019O04+          CAGTAAACTACACTCATTTGCAACTGAATCAACATTTCTTCATTGTAAATCTATGTAAAA
                      ____________________________________________________________
consensus             CAGTAAACTACACTCATTTGCAACTGAATCAACATTTCTTCATTGTAAATCTATGTAAAA
 
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rJMSF048L23+          -GATGAAAACT                                                 
rJMSF020G23+          -GATGAAAACTTGAAGCAGATTGAGTATCTGATGATACCTTGGATGGTAAAATCCTTAGG
rJMSF030F05+          -GATGAAAACTTGAAGCAGATTGAGTATCTGATGATA-CTTGGATGGTAAAATCCTTAGG
rJMFF019A23+          -GATGAAAACTTGAAGCAGATTGAGTATCTGATGATA-CTTGGATGGTAAAATCCTTAGG
rJMSF044F20+          -GATGAAAACTTGAAGCAGATTGAGTATCTGATGATA-CTTGGATGGTAAAATCCTTAGG
rJMSF049M08+          -GATGAAAACTTGAAGCAGATTGAGTATCTGATGATA-CTTGGATGGTAAAATCCTTAGG
rJMSF004I04+          TGATGAAAACTNGAAGCAGATTGAGTATCTGATGATA-CTTGGATGGTAAAATC      
rJMSF042F21+          -GATGAAAACTTGAAGCAGATTGAGTATCTGATGATA-CTTGGATGGTAAAATCCTTAGG
rJMSF011A24+          -GATGAAAACTTGAAGCAGATTGAGTATCTGATGATA-CTTGGATGGTAAAATCCTTAGG
rJMFF019O04+          -GATGAAAACTTGAAGCAGATTGAGTATCTGATGATA-CTTGGATGGTAAAATCCTTAGG
                      ____________________________________________________________
consensus             -GATGAAAACTTGAAGCAGATTGAGTATCTGATGATA-CTTGGATGGTAAAATCCTTAGG
 
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rJMSF020G23+          TTT                                                         
rJMSF030F05+          TTTTGGACTTCACTTCTTTAATAGTATATGCACCACAATTAATGGTTCCAGACTCTCCCT
rJMFF019A23+          TTTTGGACTTCACTTCTTTAATAGTATATGCACCACAAT                     
rJMSF044F20+          TTTTGGACTTCACTTCTTTAATAGTATATGCACCACAATTAATGGTTCCAGACTCTCCCT
rJMSF049M08+          TTT                                                         
rJMSF042F21+          TTTTGGACTTCACTTCTTTAATAGTATATGCACCACAATTAATGGTTCCAGACTCTCCCT
rJMSF011A24+          TTTTGGACTTCACTTCTTTAATAGTATATGCACCACAATTAATGGTTCCAGACTCTCCCT
rJMFF019O04+          TTTTGGACTTCACTTCTTTAATAGTATATGCACCACAATTAATGGTTCCAGACTCTCCCT
                      ____________________________________________________________
consensus             TTTTGGACTTCACTTCTTTAATAGTATATGCACCACAATTAATGGTTCCAGACTCTCCCT
 
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rJMSF030F05+          CCCTGCTAGATTTAGGTAGCCAAAATGGT                               
rJMSF044F20+          CCCTGCTAGATTTAGGTAGCCAAAA                                   
rJMSF042F21+          CCCTGCTAGATTTAGGTAGCCAAAATGGT                               
rJMSF011A24+          CCCTGCTAGATTTAGGTAGCCAAAATGGT                               
rJMFF019O04+          CCCTGCTAGATTTAGGTAGCCAAAATGGTTGTTGAATTGGTACTTTATTTACTGAAATTA
                      ____________________________________________________________
consensus             CCCTGCTAGATTTAGGTAGCCAAAATGGTTGTTGAATTGGTACTTTATTTACTGAAATTA