Contig 011037:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018D04Sequence577015242ref|NP_001289826.1|2e-41endoribonuclease Dicer homolog 3a [Solanum lycopersicum] gb|AHV82113.1| dicer-li656011037 (2)ref|XP_010098391.1|1e-22Endoribonuclease Dicer-3a-like protein [Morus notabilis] gb|EXB74915.1| Endoribo
JMSF031C05Sequence623024208ref|XP_011083398.1|3e-31PREDICTED: endoribonuclease Dicer homolog 3a isoform X1 [Sesamum indicum]671011037 (2)gb|KGN47575.1|4e-33hypothetical protein Csa_6G361370 [Cucumis sativus]

Alignment

This contig is upended


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rJMSF031C05+                                    GGAGAAGCTGTTCATGCCGAACTTTCGTTACAGC
                      ____________________________________________________________
consensus                                       GGAGAAGCTGTTCATGCCGAACTTTCGTTACAGC
 
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rJMSF031C05+          TCGAAGATGACTTGTTGGTCAAAGAGGGACTCGGACAGTGCAGAAAAGACGCAAAAGGGC
                      ____________________________________________________________
consensus             TCGAAGATGACTTGTTGGTCAAAGAGGGACTCGGACAGTGCAGAAAAGACGCAAAAGGGC
 
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rJMSF031C05+          AGGCGGCTCTTCTTCTTCTCAAAGACTTGAAGAGTCGAGAAATCTCATCAAAGAGAAATA
                      ____________________________________________________________
consensus             AGGCGGCTCTTCTTCTTCTCAAAGACTTGAAGAGTCGAGAAATCTCATCAAAGAGAAATA
 
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rJMSF031C05+          GACCGGAGATCGACCTTGTTGCTGTTCCTTTAGCTGGAGTTCCTTTGTTAACCGCTGATA
rJMFF018D04+                 GATCGACCTTGTTGCTGTTCNTTTAGCTGGANTTCCTTTGTTAACCGCTGATA
                      ____________________________________________________________
consensus             GACCGGAGATCGACCTTGTTGCTGTTCCTTTAGCTGGAGTTCCTTTGTTAACCGCTGATA
 
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rJMSF031C05+          GCTCGAGCAGTCCTTGTAATTCAAATAACATTCCAGAAATTCCACCAATCAGCATGAAAA
rJMFF018D04+          GCTCGAGCAGTCCTTGTAATTCAAATAACATTCCAGAAATTCCNCCAATCAGCATGAAAA
                      ____________________________________________________________
consensus             GCTCGAGCAGTCCTTGTAATTCAAATAACATTCCAGAAATTCCACCAATCAGCATGAAAA
 
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rJMSF031C05+          AGGGAGGGCCGAGGACTTCGCTTTTCAACCTTTGCAAGACACTTCAATGGCCAATGCCTA
rJMFF018D04+          AGGGAGGGCCGAGGACTTCGCTTTTCAACCTTTGCAAGACACTTCAATGGCCAATGCCTA
                      ____________________________________________________________
consensus             AGGGAGGGCCGAGGACTTCGCTTTTCAACCTTTGCAAGACACTTCAATGGCCAATGCCTA
 
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rJMSF031C05+          CAATTGATCCATTGGAGACTAAATCAAAGTCTCTGATTGAATTTGGCGAGTCGTCTGAAA
rJMFF018D04+          CAATTGATCCATTGGAGACTAAATCAAAGTNTNTGATTGAATTTGGCGAGTCGTNTGAAA
                      ____________________________________________________________
consensus             CAATTGATCCATTGGAGACTAAATCAAAGTCTCTGATTGAATTTGGCGAGTCGTCTGAAA
 
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rJMSF031C05+          GGAGGACAGGCTTCATTAGCTTCGAATCTCGAATCACCTTGACAATTCCTAACGTCGGAG
rJMFF018D04+          GGAGGACAGGCTTCATTAGCTTNGAATCTNGAATCNCCTTGACAATTCCTAACGTCGGAG
                      ____________________________________________________________
consensus             GGAGGACAGGCTTCATTAGCTTCGAATCTCGAATCACCTTGACAATTCCTAACGTCGGAG
 
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rJMSF031C05+          CAATTGAGCTCTTGGGTGAAAAACAACCCGACAAGAAGAGCTCTAGTGATTCTGCTGCAC
rJMFF018D04+          CAATTGAGCTNTTGGGTGAAAAACAACCCGACAAGAAGAGCTNTAGTGATTNTGCTGCNC
                      ____________________________________________________________
consensus             CAATTGAGCTCTTGGGTGAAAAACAACCCGACAAGAAGAGCTCTAGTGATTCTGCTGCAC
 
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rJMSF031C05+          TTGCCATGCTTCGTGAGCTTGAACGACAAGGAAAGATCATCGTTTGCAAGGAATAATCTT
rJMFF018D04+          TTGCCATGCTTNGTGAGCTTGAACGACAAGGAAAGATCATCGTTTGCAAGGAATAATNTT
                      ____________________________________________________________
consensus             TTGCCATGCTTCGTGAGCTTGAACGACAAGGAAAGATCATCGTTTGCAAGGAATAATCTT
 
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rJMSF031C05+          TTCGCTACTCGGGAAAACAGGCCGGTTATTAGGTGTAATTGTCTAACCTGGATTAATGGT
rJMFF018D04+          TTCGCTACTCGGGAAAACAGGCCGGTTATTAGGTGTAATTGTNTAACCTGGATTAATGGT
                      ____________________________________________________________
consensus             TTCGCTACTCGGGAAAACAGGCCGGTTATTAGGTGTAATTGTCTAACCTGGATTAATGGT
 
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rJMSF031C05+          AGGTTTACTTATCTTGTATCTAAACAATATGCAACAT                       
rJMFF018D04+          AGGTTTACTTATCTTGTATTTAAACAATATGCAACATTGAAGTTGGATTTNTTGTAAATA
                      ____________________________________________________________
consensus             AGGTTTACTTATCTTGTATTTAAACAATATGCAACATTGAAGTTGGATTTNTTGTAAATA
 
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rJMFF018D04+          CCATTNTGGTTATGAGCAAATTAGAAAATTATTAGCAAAGTTTGGCTTATTTGACTTTAA
                      ____________________________________________________________
consensus             CCATTNTGGTTATGAGCAAATTAGAAAATTATTAGCAAAGTTTGGCTTATTTGACTTTAA
 
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rJMFF018D04+          TATGAATGTTTGGTAAACAACACTTTAGCTTGACTTATTGATGCCAATAAGTGAAAAGAA
                      ____________________________________________________________
consensus             TATGAATGTTTGGTAAACAACACTTTAGCTTGACTTATTGATGCCAATAAGTGAAAAGAA