| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016P13 | Sequence | 614 | 013342 (5) | ref|XP_009759283.1| | 163 | PREDICTED: uncharacterized protein LOC104211847 [Nicotiana sylvestris] | 694 | 011027 (4) | emb|CDP09944.1| | 9e-32 | unnamed protein product [Coffea canephora] |
| JMFF039D02 | Sequence | 512 | 011027 (4) | emb|CDP09944.1| | 2e-19 | unnamed protein product [Coffea canephora] | |||||
| JMSF020O14 | Sequence | 678 | 013342 (5) | ref|XP_009759283.1| | 169 | PREDICTED: uncharacterized protein LOC104211847 [Nicotiana sylvestris] | 712 | 011027 (4) | emb|CDP09944.1| | 5e-37 | unnamed protein product [Coffea canephora] |
| JMSF044D07 | Sequence | 807 | 013342 (5) | ref|XP_009759283.1| | 231 | PREDICTED: uncharacterized protein LOC104211847 [Nicotiana sylvestris] | 523 | 011027 (4) | emb|CDP09944.1| | 5e-24 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF020O14+ CTAAGCAGAGATACTTGGAATACAAACAGAAAGACGTAACGATTTGCTTTGCAGAATCCC
rJMFF016P13+ ACAGAAAGACGTAACGATTTGCTTTGCAGAATCCC
____________________________________________________________
consensus CTAAGCAGAGATACTTGGAATACAAACAGAAAGACGTAACGATTTGCTTTGCAGAATCCC
. : . : . : . : . : . :
rJMSF020O14+ CTTCAAAGTGGCCTGCAAAGATCCTTGCAGCTAACTCCATGTACAGAACATGCCAAGCTC
rJMFF016P13+ CTTCAAAGTGGCCTGCAAAGATCCTTGCAGCTAACTCCATGTACAGAACATGCCAAGCTC
____________________________________________________________
consensus CTTCAAAGTGGCCTGCAAAGATCCTTGCAGCTAACTCCATGTACAGAACATGCCAAGCTC
. : . : . : . : . : . :
rJMSF044D07+ CAAACGAAAACGAACAACCTCAGAACAACAATACCATGATGTTCCACAGAC
rJMSF020O14+ TTCTGCTAACAAACGAAAACGAACAACCTCAGAACAACAATACCATGATGTTCCACAGAC
rJMFF016P13+ TTNTGCTAACAAACGAAAACGAACAACCTCAGAACAACAATACCATGATGTTCCACAGAC
____________________________________________________________
consensus TTCTGCTAACAAACGAAAACGAACAACCTCAGAACAACAATACCATGATGTTCCACAGAC
. : . : . : . : . : . :
rJMSF044D07+ TGTCTGACATGATAACAGGTATAGTAGGGGCATGTCTCACCAACATTCCCCGAGTTATAT
rJMFF039D02+ CATGATAACNNGTATAGTAGGGGCATGTNTCACCAACATTCCCCGAGNTATAT
rJMSF020O14+ TGTCTGACATGATAACAGGTATAGTAGGGGCATGTCTCACCAACATTCCCCGAGTTATAT
rJMFF016P13+ TGTCTGACATGATAACAGGTATAGTAGGGGCATGTCTCACCAACATTCCCCGAGTTATAT
____________________________________________________________
consensus TGTCTGACATGATAACAGGTATAGTAGGGGCATGTCTCACCAACATTCCCCGAGTTATAT
. : . : . : . : . : . :
rJMSF044D07+ TCATGCTATGCCACCAGGGCAGCATCAAAGAGAGGGAGACTCGAGTCCGCTTTGCCATTT
rJMFF039D02+ TCATGGTATGCCACCAGGGCAGCATCAAAGAGAGGGAGACTNGAGTCCGCTTTGCCATTT
rJMSF020O14+ TCATGCTATGCCACCAGGGCAGCATCAAAGAGAGGGAGACTCGAGTCCGCTTTGCCATTT
rJMFF016P13+ TCATGCTATGCCACCAGGGCAGCATCAAAGAGAGGGAGACTCGAGTCCGCTTTGCCATTT
____________________________________________________________
consensus TCATGCTATGCCACCAGGGCAGCATCAAAGAGAGGGAGACTCGAGTCCGCTTTGCCATTT
. : . : . : . : . : . :
rJMSF044D07+ NGCTTCTGGGGAAATCTGGGAAGATTTTAGAGATTCTAAACCACAGACTACTCCCAAGTT
rJMFF039D02+ TGCTTNTGGGGAAATNTGGGAAGATTTTAGAGATTNTAAACCACAGACTACTCCCAAGTT
rJMSF020O14+ TGCTTCTGGGGAAATCTGGGAAGATTTTAGAGATTCTAAACCACAGACTACTCCCAAGTT
rJMFF016P13+ TGCTTCTGGGGAAATCTGGGAAGATTTTAGAGATTNTAAACCACAGACTACTCCCAAGTT
____________________________________________________________
consensus TGCTTCTGGGGAAATCTGGGAAGATTTTAGAGATTCTAAACCACAGACTACTCCCAAGTT
. : . : . : . : . : . :
rJMSF044D07+ CATGTTCAGAGAGATTGGTACACATCGACGATTGGCGGGCGTTGAGCAAAGAGAAGGATC
rJMFF039D02+ CATGTTCAGAGAGATTGGTACACATCGACGATTGGCGGGCGTTGAGCAAAGAGAAGGATC
rJMSF020O14+ CATGTTCAGAGAGATTGGTACACATCGACGATTGGCGGGCGTTGAGCAAAGAGAAGGATC
rJMFF016P13+ CATGTTCAGAGAGATTGGTACACATCGACGATTGGCGGGCGTTGAGCAAAGAGAAGGATC
____________________________________________________________
consensus CATGTTCAGAGAGATTGGTACACATCGACGATTGGCGGGCGTTGAGCAAAGAGAAGGATC
. : . : . : . : . : . :
rJMSF044D07+ ATCAGCAGCATTGGAATTTCTCCCCAGCAGAGGATGATAAAGCTCTCACAGGCTCTCCTG
rJMFF039D02+ ATCAGCAGCATTGGAATTTCTCCCCAGCAGAGGATGATAAAGCTCTCACAGGCTCTCCTG
rJMSF020O14+ ATCAGCAGCATTGGAATTTCTCCCCAGCAGAGGATGATAAAGCTCTCACAGGCTCTCCTG
rJMFF016P13+ ATCAGCAGCATTGGAATTTCTCCCCAGCAGAGGATGATAAAGCTCTCACAGGCTCTCCTG
____________________________________________________________
consensus ATCAGCAGCATTGGAATTTCTCCCCAGCAGAGGATGATAAAGCTCTCACAGGCTCTCCTG
. : . : . : . : . : . :
rJMSF044D07+ ACTTTCGTCTAACAGTTGAATGAGCTTAGGAGAGTGCAGGTTTGTTTGTTCATCATATGT
rJMFF039D02+ ACTTTCGTNTAACAGTTGAATGAGCTTAGGAGAGTGCAGGTTTGTTTGTTCATCATATGT
rJMSF020O14+ ACTTTCGTCTAACAGTTGAATGAGCTTAGGAGAGTGCAGGTTTGTTTGTTCATCATATGT
rJMFF016P13+ ACTTTCGTCTAACAGTTGAATGAGCTTAGGAGAGTGCAGGTTTGTTTGTTCATCATATGT
____________________________________________________________
consensus ACTTTCGTCTAACAGTTGAATGAGCTTAGGAGAGTGCAGGTTTGTTTGTTCATCATATGT
. : . : . : . : . : . :
rJMSF044D07+ AGTACTCCTAGTTTCATGTCCCCAAGGAATTGTTTTAGCTAAATTCATAACTTTTGTGCT
rJMFF039D02+ AGTACTCCTAGTTTCATGTCCCCAAGGAATTGTTTTAGNTAAATTCATAACTTTTGTGCT
rJMSF020O14+ AGTACTCCTAGTTTCATGTCCCCAAGGAATTGTTTTAGCTAAATTCATAACTTTTGTGCT
rJMFF016P13+ AGTACTCCTAGTTTCATGTCCCCAAGGAATTGTTTTAGCTAAATTCATAACTTTTGTGCT
____________________________________________________________
consensus AGTACTCCTAGTTTCATGTCCCCAAGGAATTGTTTTAGCTAAATTCATAACTTTTGTGCT
. : . : . : . : . : . :
rJMSF044D07+ AATTTAGGGTGTATGATGTAAAAAAGTAATCTTGTATCAATCCCCAGGGCCT
rJMFF039D02+ AATTTAGGGTGTATGATGTAAAAAAGTAA-CTTGTATCAATCCCCAGGGCCTGGGCATAG
rJMSF020O14+ AATTTAGGGTGTATGATGTAAAAAAGTAA-CTTGTATCAATCCCCAGGGCCTGGGCATAG
rJMFF016P13+ AATTTAGGGTGTATGATGTAAAAAAGTAA-CTTGTATCAATCCCCAGGGCCTGGGCATAG
____________________________________________________________
consensus AATTTAGGGTGTATGATGTAAAAAAGTAA-CTTGTATCAATCCCCAGGGCCTGGGCATAG
. : . : . : . : . : . :
rJMFF039D02+ CTAGATTGACCAATTCAAAGAGGGCCTGGTCATAAGCATC
rJMSF020O14+ CTAGATTGACCAATTCAAAGAGGGCCTGGTCATAAGCATCTCTGGAGAACGTG
rJMFF016P13+ CTAGATTGACCAATTCAAAGAGGGCCTGGTCATAAGCATCTCTGGAGAACGTGTAAATTA
____________________________________________________________
consensus CTAGATTGACCAATTCAAAGAGGGCCTGGTCATAAGCATCTCTGGAGAACGTGTAAATTA