Contig 011022:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005H22Sequence478011022 (4)gb|ADV02768.1|5e-29putative low temperature and salt responsive protein isoform 1 [Ipomoea batatas464011022 (4)gb|ADV02768.1|4e-29putative low temperature and salt responsive protein isoform 1 [Ipomoea batatas
JMFF015N22Sequence358011022 (4)gb|ADV02768.1|8e-14putative low temperature and salt responsive protein isoform 1 [Ipomoea batatas327011022 (4)gb|ADV02768.1|6e-14putative low temperature and salt responsive protein isoform 1 [Ipomoea batatas

Alignment

This contig is upended


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JMFF005H22-                          CTGCAAAACTAAACTTGCAGTTATCTGAATTTCGTCACATATAAA
rJMFF005H22+                         CTGCAAAACTAAACTTGCAGTTATCTGAATTTCGTCACATATAAA
                      ____________________________________________________________
consensus                            CTGCAAAACTAAACTTGCAGTTATCTGAATTTCGTCACATATAAA
 
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JMFF005H22-           ATCGTCACTAAAACTTCCTTTGAGTGAAAGAAAATGGCAGATGGAAGCACAGCCACTTGC
rJMFF005H22+          ATCGTCACTAAAACTTCCTTTGAGTGAAAGAAAATGGCAGATGGAAGCACAGCCACTTGC
                      ____________________________________________________________
consensus             ATCGTCACTAAAACTTCCTTTGAGTGAAAGAAAATGGCAGATGGAAGCACAGCCACTTGC
 
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JMFF005H22-           GTAGACATTCTGTTGGCCATCATATTGCCTCCCCTTGGTGTGTTCCTCAAGTTTGGGTGT
JMFF015N22-                                                   TGTTCCTCAAGTTTGGGTGT
rJMFF005H22+          GTAGACATTCTGTTGGCCATCATATTGCCTCCCCTTGGTGTGTTCCTCAAGTTTGGGTGT
rJMFF015N22+                                                  TGTTCCTCAAGTTTGGGTGT
                      ____________________________________________________________
consensus             GTAGACATTCTGTTGGCCATCATATTGCCTCCCCTTGGTGTGTTCCTCAAGTTTGGGTGT
 
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JMFF005H22-           CAGGTTGAGTTTTGGATCTGTTGTTTGCTTACTCTGTTTGGATGGCTCCCTGGAATTGTA
JMFF015N22-           CAGGTTGAGTTTTGGATCTGTTGTTTGCTTACTCTGTTTGGATGGCTCCCTGGAATTGTA
rJMFF005H22+          CAGGTTGAGTTTTGGATCTGTTGTTTGCTTACTCTGTTTGGATGGCTCCCTGGAATTGTA
rJMFF015N22+          CAGGTTGAGTTTTGGATCTGTTGTTTGCTTACTCTGTTTGGATGGCTCCCTGGAATTGTA
                      ____________________________________________________________
consensus             CAGGTTGAGTTTTGGATCTGTTGTTTGCTTACTCTGTTTGGATGGCTCCCTGGAATTGTA
 
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JMFF005H22-           TATGCCATTTGGGTTCTCACCAAGTGATCTCATCAAATTTATCCTGTAACTGGT      
JMFF015N22-           TATGCCATTTGGGTTCTCACCAAGTGATCTCATCAAATTTATCCTGTAACTGGT      
rJMFF005H22+          TATGCCATTTGGGTTCTCACCAAGTGATCTCATCAAATTTATCCTGTAACTGGTGGAGGG
rJMFF015N22+          TATGCCATTTGGGTTCTCACCAAGTGATCTCATCAAATTTATCCTGTAACTGGTGGAGGG
                      ____________________________________________________________
consensus             TATGCCATTTGGGTTCTCACCAAGTGATCTCATCAAATTTATCCTGTAACTGGTGGAGGG
 
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rJMFF005H22+          AGGTGTGAATGCCATCAAGTTTAGATAAAGGAGTGCTTCTTCTCATTTACTTTTGTTATA
rJMFF015N22+          AGGTGTGAATGCCATCAAGTTTAGATAAAGGAGTGCTTCTTCTCATTTACTTTTGTTATA
                      ____________________________________________________________
consensus             AGGTGTGAATGCCATCAAGTTTAGATAAAGGAGTGCTTCTTCTCATTTACTTTTGTTATA
 
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rJMFF005H22+          GTTTGATGTGAAAATGTGATGTTTCCTAGTGATGTCTTTTATGTTATTTGTGGAGTTGGA
rJMFF015N22+          GTTTGATGTGAAAATGTGATGTTTCCTAGTGATGTCTTTTATGTTATTTGTGGAGTTGGA
                      ____________________________________________________________
consensus             GTTTGATGTGAAAATGTGATGTTTCCTAGTGATGTCTTTTATGTTATTTGTGGAGTTGGA
 
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rJMFF005H22+          TTATTTGTATTGTATGTGATTTTCTTGTATTCAATTTCATTTATTTAACAAAT       
rJMFF015N22+          TTATTTGTATTGTATGTGATTTTCTTGTATTCAATTTCATTTATTTAACAAATTAGAAGT
                      ____________________________________________________________
consensus             TTATTTGTATTGTATGTGATTTTCTTGTATTCAATTTCATTTATTTAACAAATTAGAAGT