| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011O13 | Sequence | 351 | 011008 (8) | ref|XP_009802442.1| | 1e-11 | PREDICTED: serine/threonine-protein kinase HT1-like [Nicotiana sylvestris] ref| | |||||
| JMFF029L02 | Sequence | 427 | 003597 (3) | dbj|BAO57281.1| | 4e-11 | protein kinase family protein [Ipomoea nil] | 798 | 011008 (8) | dbj|BAO57281.1| | 3e-138 | protein kinase family protein [Ipomoea nil] |
| JMFF033K17 | Sequence | 302 | 010281 (2) | 732 | 011008 (8) | dbj|BAO57281.1| | 2e-121 | protein kinase family protein [Ipomoea nil] | |||
| JMFF039H22 | Sequence | 336 | 010281 (2) | 696 | 011008 (8) | dbj|BAO57281.1| | 1e-113 | protein kinase family protein [Ipomoea nil] | |||
| JMFF041N19 | Sequence | 641 | 003597 (3) | dbj|BAO57281.1| | 1e-70 | protein kinase family protein [Ipomoea nil] | 642 | 011008 (8) | dbj|BAO57281.1| | 2e-92 | protein kinase family protein [Ipomoea nil] |
| JMSF012M06 | Sequence | 465 | 003597 (3) | dbj|BAO57281.1| | 2e-25 | protein kinase family protein [Ipomoea nil] | 773 | 011008 (8) | dbj|BAO57281.1| | 8e-134 | protein kinase family protein [Ipomoea nil] |
| JMSF048B04 | Sequence | 361 | 022248 | 367 | 011008 (8) | dbj|BAO57281.1| | 3e-79 | protein kinase family protein [Ipomoea nil] | |||
| JMSF049B04 | Sequence | 148 | 011008 (8) | ref|XP_010932796.1| | 2e-21 | PREDICTED: serine/threonine-protein kinase HT1 isoform X3 [Elaeis guineensis] | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF012M06+ AAAAGAAGCTGGCGTTTAAGATTGTTATTCAACTTGCT
rJMFF029L02+ TTGTACAAAANCCGGAAAAAGAAGCTGGCGTTTAAGATTGTTATTCAACTTGCT
____________________________________________________________
consensus TTGTACAAAANCCGGAAAAAGAAGCTGGCGTTTAAGATTGTTATTCAACTTGCT
. : . : . : . : . : . :
rJMSF012M06+ TNGGATCTTTCTCGAGGGTTGAGCTATTTACATTCCAAAAAAATAGTTCATCGCGATGTG
rJMSF048B04+ CTCGAGGGTTGAGCTATTTACATTCCAAAAAAATAGTTCATCGCGATGTG
rJMFF029L02+ TTGGATCTTTCTCGAGGGTTGAGCTATTTACATTCCAAAAAAATAGTTCATCGCGATGTG
rJMFF039H22+ CATCGCGATGTG
rJMFF033K17+ TTGAGCTATTTACATTCCAAAAAAATAGTTCATCGCGATGTG
____________________________________________________________
consensus TTGGATCTTTCTCGAGGGTTGAGCTATTTACATTCCAAAAAAATAGTTCATCGCGATGTG
. : . : . : . : . : . :
rJMSF012M06+ AAAGCTGAAAACATGTTGCTGGATACTAGTCGAAATTTGAAAATCGCTGATTTCGGTGTG
rJMSF048B04+ AAAGCTGAAAACATGTTGCTGGATACTAGTCGAAATTTGAAAATCGCTGATTTCGGTGTG
rJMFF029L02+ AAAGCTGAAAACATGTTGCTGGATACTAGTCGAAATTTGAAAATCGCTGATTTCGGTGTG
rJMFF039H22+ AAAGCTGAAAACATGTTGCTGGATACTAGTCGAAATTTGAAAATCGCTGATTTCGGTGTG
rJMFF033K17+ AAAGCTGAAAACATGTTGCTGGATACTAGTCGAAATTTGAAAATCGCTGATTTCGGTGTG
____________________________________________________________
consensus AAAGCTGAAAACATGTTGCTGGATACTAGTCGAAATTTGAAAATCGCTGATTTCGGTGTG
. : . : . : . : . : . :
rJMSF012M06+ GCTCGTGTTGAAGCACAGAATCCAAAGGACATGACGGGTGAAACTGGTACCCTTGGGTAC
rJMSF048B04+ GCTCGTGTTGAAGCACAGAATCCAAAGGACATGACGGGTGAAACTGGTACCCTTGGGTAC
rJMFF029L02+ GCTCGTGTTGAAGCACAGAATCCAAAGGACATGACGGGTGAAACTGGTACCCTTGGGTAC
rJMFF039H22+ GCTCGTGTTGAAGCACAGAATCCAAAGGACATGACGGGTGAAACTGGTACCCTTGGGTAC
rJMFF033K17+ GCTCGTGTTGAAGCACAGAATCCAAAGGACATGACGGGTGAAACTGGTACCCTTGGGTAC
rJMFF041N19+ TGAAGCACAGAATCCAAAGGACATGACGGGTGAAACTGGTACCCTTGGGTAC
____________________________________________________________
consensus GCTCGTGTTGAAGCACAGAATCCAAAGGACATGACGGGTGAAACTGGTACCCTTGGGTAC
. : . : . : . : . : . :
rJMSF012M06+ ATGGCCCCAGAGGTTCTTGATGGCAAGCCCTATAACAGAAAATGCGATGTATACAGCTTC
rJMSF048B04+ ATGGCCCCAGAGGTTCTTGATGGCAAGCCCTATAACAGAAAATGCGATGTATACAGCTTC
rJMFF029L02+ ATGGCCCCAGAGGTTCTTGATGGCAAGCCCTATAACAGAAAATGCGATGTATACAGCTTC
rJMFF039H22+ ATGGCCCCAGAGGTTCTTGATGGCAAGCCCTATAACAGAAAATGCGATGTATACAGCTTC
rJMSF049B04+ TGGCCCCAGAGGTTCTTGATGGCAAGCCCTATAACAGAAAATGCGATGTATACAGCTTC
rJMFF033K17+ ATGGCCCCAGAGGTTCTTGATGGCAAGCCCTATAACAGAAAATGCGATGTATACAGCTTC
rJMFF041N19+ ATGGCCCCAGAGGTTCTTGATGGCAAGCCCTATAACAGAAAATGCGATGTATACAGCTTC
____________________________________________________________
consensus ATGGCCCCAGAGGTTCTTGATGGCAAGCCCTATAACAGAAAATGCGATGTATACAGCTTC
. : . : . : . : . : . :
rJMSF012M06+ GGGGTTTGCTTGTGGGAAATTTACTGCTGTGATTTGCCATATCCAGATCTGAGCTTTGCT
rJMSF048B04+ GGGGTTTGCTTGTGGGAAATTTACTGCTGTGATTTGCCATATCCAGATCTGAGCTTTGCT
rJMFF029L02+ GGGGTTTGCTTGTGGGAAATTTACTGCTGTGATTTGCCATATCCAGATCTGAGCTTTGCT
rJMFF039H22+ GGGGTTTGCTTGTGGGAAATTTACTGCTGTGATTTGCCATATCCAGATCTGAGCTTTGCT
rJMSF049B04+ GGGGTNTGCTTGNGGGAAATTTACTGCTGTGATTTNCCATATCCAGATCTGAGCNNTGCT
rJMFF033K17+ GGGGTTTGCTTGTGGGAAATTTACTGCTGTGATTTGCCATATCCAGATCTGAGCTTTGCT
rJMFF041N19+ GGGGTTTGCTTGTGGGAAATTTACTGCTGTGATTTGCCATATCCAGATCTGAGCTTTGCT
____________________________________________________________
consensus GGGGTTTGCTTGTGGGAAATTTACTGCTGTGATTTGCCATATCCAGATCTGAGCTTTGCT
. : . : . : . : . : . :
rJMSF012M06+ GAAGTTTCTTCTGCGGTTGTTAGACAGAATCTCCGCCCAGAAATTCCCAGATGTTGCCCG
rJMSF048B04+ GAAGTTTCTTCTGCGGTTGTTAGACAGAATCTCCGCCCAGAAATTCCCAGNNGTTGCCCG
rJMFF029L02+ GAAGTTTCTTCTGCGGTTGTTAGACAGAATCTCCGCCCAGAAATTCCCAGATGTTGCCCG
rJMFF039H22+ GAAGTTTCTTCTGCGGTTGTTAGACAGAATCTCCGCCCAGAAATTCCCAGATGTTGCCCG
rJMSF049B04+ GAAGTATCTTNTGCGGNTGNTAGACAGAA
rJMFF033K17+ GAAGTTTCTTCTGCGGTTGTTAGACAGAATCTCCGCCCAGAAATTCCCAGATGTTGCCCG
rJMFF041N19+ GAAGTTTCTTCTGCGGTTGTTAGACAGAATCTCCGCCCAGAAATTCCCAGATGTTGCCCG
____________________________________________________________
consensus GAAGTTTCTTCTGCGGTTGTTAGACAGAATCTCCGCCCAGAAATTCCCAGATGTTGCCCG
. : . : . : . : . : . :
rJMSF012M06+ AGTTCCTTAGCCAGCATCATGAAGAAATGCTGGGATGCGAATCCAGACAAGCGACCTGAA
rJMSF048B04+ AGTTCNTTAGCCAGCAT
rJMFF029L02+ AGTTCCTTAGCCAGCATCATGAAGAAATGCTGGGATGCGAATCCAGACAAGCGACCTGAA
rJMFF039H22+ AGTTCCTTAGCCAGCATCATGAAGAAATGCTGGGATGCGAATCCAGACAAGCGACCTGAA
rJMFF033K17+ AGTTCCTTAGCCAGCATCATGAAGAAATGCTGGGATGCGAATCCAGACAAGCGACCTGAA
rJMFF041N19+ AGTTCCTTAGCCAGCATCATGAAGAAATGCTGGGATGCGAATCCAGACAAGCGACCTGAA
____________________________________________________________
consensus AGTTCCTTAGCCAGCATCATGAAGAAATGCTGGGATGCGAATCCAGACAAGCGACCTGAA
. : . : . : . : . : . :
rJMSF012M06+ ATGGACGAAGTAGTGAGGTTGATGGAAGCGATTGATACGAGCAAGGGAGGAGGGATGATA
rJMFF029L02+ ATGGACGAAGTAGTGAGGTTGATGGAAGCGATTGATACGAGCAAGGGAGGAGGGATGATA
rJMFF039H22+ ATGGACGAAGTAGTGAGGTTGATGGAAGCGATTGATACGAGCAAGGGAGGAGGGATGATA
rJMFF033K17+ ATGGACGAAGTAGTGAGGTTGATGGAAGCGATTGATACGAGCAAGGGAGGAGGGATGATA
rJMFF041N19+ ATGGACGAAGTAGTGAGGTTGATGGAAGCGATTGATACGAGCAAGGGAGGAGGGATGATA
rJMFF011O13+ AGTAGTGAGGTTGATGGAAGCGATTGATACGAGCAAGGGAGGAGGGATGATA
____________________________________________________________
consensus ATGGACGAAGTAGTGAGGTTGATGGAAGCGATTGATACGAGCAAGGGAGGAGGGATGATA
. : . : . : . : . : . :
rJMSF012M06+ CCCGAAGACCAAGCTGGCGGCTGTTTCTGCTTTGCTCCAACTCGCGGTCCATAAGGCTTC
rJMFF029L02+ CCCGAAGACCAAGCTGGCGGCTGTTTCTGCTTTGCTCCAACTCGCGGTCCATAAGGCTTC
rJMFF039H22+ CCCGAAGACCAAGCTGGCGGCTGTTTCTGCTTTGCTCCAACTCGCGGTCCATAAGGCTTC
rJMFF033K17+ CCCGAAGACCAAGCTGGCGGCTGTTTCTGCTTTGCTCCAACTCGCGGTCCATAAGGCTTC
rJMFF041N19+ CCCGAAGACCAAGCTGGCGGCTGTTTCTGCTTTGCTCCAACTCGCGGTCCATAAGGCTTC
rJMFF011O13+ CCCGAAGACCAAGNTGGCGGCTGTTTGTGCTTTGNTCCAACTCGCGGTCCATAAGGCTTC
____________________________________________________________
consensus CCCGAAGACCAAGCTGGCGGCTGTTTCTGCTTTGCTCCAACTCGCGGTCCATAAGGCTTC
. : . : . : . : . : . :
rJMSF012M06+ TCCACACCCGCTCTCTTTTTGCCTTTCGTAAGGCGCTCGATTTGTACTCTCTGTACAAAC
rJMFF029L02+ TCCACACCCGCTCTCTTTTTGCCTTTCGTAAGGCGCTCGATTTGTACTCTCTGTACAAAC
rJMFF039H22+ TCCACACCCGCTCTCTTTTTGCCTTTCGTAAGGCGCTCGATTTGTACTCTCTGTACAAAC
rJMFF033K17+ TCCACACCCGCTCTCTTTTTGCCTTTCGTAAGGCGCTCGATTTGTACTCTCTGTACAAAC
rJMFF041N19+ TCCACACCCGCTCTCTTTTTGCCTTTCGTAAGGCGCTCGATTTGTACTCTCTGTACAAAC
rJMFF011O13+ TCCACACCCGCTCTCTTTTTGCCTTTCGTAAGGCGCTCGATTTGTACTCTCTGTACAAAC
____________________________________________________________
consensus TCCACACCCGCTCTCTTTTTGCCTTTCGTAAGGCGCTCGATTTGTACTCTCTGTACAAAC
. : . : . : . : . : . :
rJMSF012M06+ TCATTTCCCTCTCAGACATCAAATAATTAGAGCAAAAAGTTCCAACTTCTCTTGTTCTTT
rJMFF029L02+ TCATTTCCCTCTCAGACATCAAATAATTAGAGCAAAAAGTTCCAACTTCTCTTGTTCTTT
rJMFF039H22+ TCATTTCCCTCTCAGACATCAAATAATTAGAGCAAAAAGTTCCAACTTCTCTTGTTCTTT
rJMFF033K17+ TCATTTCCCTCTCAGACATCAAATAATTAGAGCAAAAAGTTCCAACTTCTCTTGTTCTTT
rJMFF041N19+ TCATTTCCCTCTCAGACATCAAATAATTAGAGCAAAAAGTTCCAACTTCTCTTGTTCTTT
rJMFF011O13+ TCATTTCCCTCTCAGACATCAAATAATTAGAGCAAAAAGTTCCAACTTCTCTTGTTCTTT
____________________________________________________________
consensus TCATTTCCCTCTCAGACATCAAATAATTAGAGCAAAAAGTTCCAACTTCTCTTGTTCTTT
. : . : . : . : . : . :
rJMSF012M06+ GTCACAGTGTAANCCATGGTTTGTTAATTTTCGAGATTTTCTTGC
rJMFF029L02+ GTCACAGTGTAA-CCATGGTTTGTTAATTTTCGAGATTTTCTTGCACAGTTCTGTACTAT
rJMFF039H22+ GTCACAGTGTAA-CCATGGTTTGTTAATTTTCGAGATTTTCTTGCACAGTTCTGTACTAT
rJMFF033K17+ GTCACAGTGTAA-CCATGGTTTGTTAATTTTCGAGATTTTCTTGCACAGTTCTGTACTAT
rJMFF041N19+ GTCACAGTGTAA-CCATGGTTTGTTAATTTTCGAGATTTTCTTGCACAGTTCTGTACTAT
rJMFF011O13+ GTCACAGTGTAN-CCATGGTTTGTTAATTTTCGAGATTTTCTTGCACAGTTCTGTACTAT
____________________________________________________________
consensus GTCACAGTGTAA-CCATGGTTTGTTAATTTTCGAGATTTTCTTGCACAGTTCTGTACTAT
. : . : . : . : . : . :
rJMFF029L02+ ACCAGGTGCTCGATTTGTCGTATAA
rJMFF039H22+ ACCAGGTGCTCGATTTGTCGTATAA
rJMFF033K17+ ACCAGGTGCTCGATTTGTCGTATAA
rJMFF041N19+ ACCAGGTGCTCGATTTGTCGTATAATGCATTTTGATTCTTC
rJMFF011O13+ ACCAGGTGCTCGATTTGTCGTATAATGCATTTTGATTCTTCACAATGTNNTCATAAAATC
____________________________________________________________
consensus ACCAGGTGCTCGATTTGTCGTATAATGCATTTTGATTCTTCACAATGTNNTCATAAAATC