Contig 011005:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011L06Sequence526004498 (2)ref|XP_010326736.1|6e-31PREDICTED: IAA13 isoform X1 [Solanum lycopersicum]733011005 (2)ref|XP_006340886.1|8e-74PREDICTED: auxin-responsive protein IAA13-like [Solanum tuberosum]
JMFF028M22Sequence521004498 (2)ref|XP_010326736.1|9e-31PREDICTED: IAA13 isoform X1 [Solanum lycopersicum]645011005 (2)ref|XP_002528346.1|7e-64Auxin-responsive protein IAA13, putative [Ricinus communis] gb|EEF34018.1| Auxin

Alignment

This contig is upended


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rJMFF011L06+                                                         GAAGATGATAAGG
                      ____________________________________________________________
consensus                                                            GAAGATGATAAGG
 
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rJMFF011L06+          GGAATGGGCGGGGATGAGGAGAAGGAGAACTCGAAAAAGAAGATGAATCATGGAAATAAC
                      ____________________________________________________________
consensus             GGAATGGGCGGGGATGAGGAGAAGGAGAACTCGAAAAAGAAGATGAATCATGGAAATAAC
 
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rJMFF028M22+                       GTGGTGTCAAAGAAAAGGGAAGTCTCGGGTTTGTGAAGGTGAATATG
rJMFF011L06+          AGCGATGATGGATGTGGTGTCAAAGAAAAGGGAAGTCTCGGGTTTGTGAAGGTGAATATG
                      ____________________________________________________________
consensus             AGCGATGATGGATGTGGTGTCAAAGAAAAGGGAAGTCTCGGGTTTGTGAAGGTGAATATG
 
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rJMFF028M22+          GATGGATTGCCAATCGGGAGAAAGGTGGATCTGAATGCTCACACGTCCTACGAAACGCTG
rJMFF011L06+          GATGGATTGCCAATCGGGAGAAAGGTGGATCTGAATGCTCACACGTCCTACGAAACGCTG
                      ____________________________________________________________
consensus             GATGGATTGCCAATCGGGAGAAAGGTGGATCTGAATGCTCACACGTCCTACGAAACGCTG
 
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rJMFF028M22+          GCCCAAACATTGGAGGAGATGTTCTTCAAGTCGACAACAAAAGCCATGAACTCTATCTGT
rJMFF011L06+          GCCCAAACATTGGAGGAGATGTTCTTCAAGTCGACAACAAAAGCCATGAACTCTATCTGT
                      ____________________________________________________________
consensus             GCCCAAACATTGGAGGAGATGTTCTTCAAGTCGACAACAAAAGCCATGAACTCTATCTGT
 
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rJMFF028M22+          GCGGAAAAGGAGCAAAGAATGACACCCTCGAAGCTTTTGGATGGATCATCTGACTTTGTG
rJMFF011L06+          GCGGAAAAGGAGCAAAGAATGACACCCTCGAAGCTTTTGGATGGATCATCTGACTTTGTG
                      ____________________________________________________________
consensus             GCGGAAAAGGAGCAAAGAATGACACCCTCGAAGCTTTTGGATGGATCATCTGACTTTGTG
 
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rJMFF028M22+          CTAACGTACGAGGATAAAGAAGGCGATTGGATGCTCGTGGGAGATGTTCCGTGGGGGATG
rJMFF011L06+          CTAACGTACGAGGATAAAGAAGGCGATTGGATGCTCGTGGGAGATGTTCCGTGGGGGATG
                      ____________________________________________________________
consensus             CTAACGTACGAGGATAAAGAAGGCGATTGGATGCTCGTGGGAGATGTTCCGTGGGGGATG
 
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rJMFF028M22+          TTTCTCTGCACCGTGAAAAGGCTAAGAATCATGAAGACTTCCGAGGCTAATGGACTTGCT
rJMFF011L06+          TTTCTCTGCACCGTGAAAAGGCTAAGAATCATGAAGACTTCCGAGGCTAATGGACTTGCT
                      ____________________________________________________________
consensus             TTTCTCTGCACCGTGAAAAGGCTAAGAATCATGAAGACTTCCGAGGCTAATGGACTTGCT
 
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rJMFF028M22+          CCGAGGGTCCAGGAAAGGCAGGACAGACACACCGGAAAACCAATCTAAAGCTCCGTTCTT
rJMFF011L06+          CCGAGGGTCCAGGAAAGGCAGGACAGACACACCGGAAAACCAATCTAAAGCTCCGTTCTT
                      ____________________________________________________________
consensus             CCGAGGGTCCAGGAAAGGCAGGACAGACACACCGGAAAACCAATCTAAAGCTCCGTTCTT
 
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rJMFF028M22+          CAACAGCGTGCAAAGAAAAAAACACAAGTAGCTAGAGAAGTTAATGCGTTTTGCTCAAGA
rJMFF011L06+          CAACAGCGTGCAAAGAAAAAAACACAAGTAGCTAGAGAAGTTAATGCGTTTTGCTCAAGA
                      ____________________________________________________________
consensus             CAACAGCGTGCAAAGAAAAAAACACAAGTAGCTAGAGAAGTTAATGCGTTTTGCTCAAGA
 
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rJMFF028M22+          TCGCTCTTTTGTCGCCTTTTGTGGTTTTGTTTTGTTTTTTTTTAATGTTTTGCAACCCAT
rJMFF011L06+          TCGCTCTTTTGTCGCCTTTTGTGGTTTTGTTTTGTTTTTTTTTAATGTTTTGCAACCCAT
                      ____________________________________________________________
consensus             TCGCTCTTTTGTCGCCTTTTGTGGTTTTGTTTTGTTTTTTTTTAATGTTTTGCAACCCAT
 
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rJMFF028M22+          GTTCAAGTTTAATTCCCCTTTACCTTTTCTAAGCCTAGTTGAAAGTAGTGTTTACCCCCC
rJMFF011L06+          GTTCAAGTTTAATTCCCCTTTACCTTTTCTAAGCCTAGTTGAAAGTAGTGTTTACCCCCC
                      ____________________________________________________________
consensus             GTTCAAGTTTAATTCCCCTTTACCTTTTCTAAGCCTAGTTGAAAGTAGTGTTTACCCCCC
 
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rJMFF028M22+          TCCTCATCCTCCCTATATATTTCACCAGAAAATGTTTTGGCAAATGCTACTTTCTCCT  
rJMFF011L06+          TCCTCATCCTCCCTATATATTTCACCAGAAAATGTTTTGGCAAATGCTACTTTCTCCTAG
                      ____________________________________________________________
consensus             TCCTCATCCTCCCTATATATTTCACCAGAAAATGTTTTGGCAAATGCTACTTTCTCCTAG