Contig 010983:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007O21Sequence563003165 (2)gb|AGG79244.1|7e-98auxin efflux facilitator PIN1b [Nicotiana tabacum]707010983 (3)gb|AIF28293.1|2e-101PIN-like protein, partial [Persea borbonia]
JMFF022H06Sequence501003165 (2)ref|XP_009783366.1|5e-81PREDICTED: probable auxin efflux carrier component 1c [Nicotiana sylvestris]700010983 (3)gb|AIF28293.1|2e-101PIN-like protein, partial [Persea borbonia]
JMSF008H12Sequence266018844770010983 (3)gb|AIF28293.1|1e-107PIN-like protein, partial [Persea borbonia]

Alignment

This contig is upended


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rJMSF008H12+                                                                   GAG
                      ____________________________________________________________
consensus                                                                      GAG
 
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rJMSF008H12+          ATACTGAAATGAACAACCTGCAACAAGGGGGTGAAGGGGGTGGAGAGANCAACAAAGTGA
                      ____________________________________________________________
consensus             ATACTGAAATGAACAACCTGCAACAAGGGGGTGAAGGGGGTGGAGAGANCAACAAAGTGA
 
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rJMSF008H12+          AAGGCATGCCTCCAACAAGTGTGATGACAAGGCTCATACTTATCATGGTTTGGAGAAAAC
rJMFF022H06+                            GTGTGATGACAAGGCTCATACTTATCATGGTTTGGAGAAAAC
rJMFF007O21+                            GTGTGATGACAAGGCTCATACTTATCATGGTTTGGAGAAAAC
                      ____________________________________________________________
consensus             AAGGCATGCCTCCAACAAGTGTGATGACAAGGCTCATACTTATCATGGTTTGGAGAAAAC
 
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rJMSF008H12+          TTATCAGAAACCCAAACACTTATTCCAGTTTGCTTGGCCTCACCTGGTCCCTAGTCTCAT
rJMFF022H06+          TTATCAGAAACCCAAACACTTATTCCAGTTTGCTTGGCCTCACCTGGTCCCTAGTCTCAT
rJMFF007O21+          TTATCAGAAACCCAAACACTTATTCCAGTTTGCTTGGCCTCACCTGGTCCCTAGTCTCAT
                      ____________________________________________________________
consensus             TTATCAGAAACCCAAACACTTATTCCAGTTTGCTTGGCCTCACCTGGTCCCTAGTCTCAT
 
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rJMSF008H12+          TCAGATGGAATGTGCAGATGCCTGCTATAATTGCAAAGTCCATATCTATTCTGTCAGATG
rJMFF022H06+          TCAGATGGAATGTGCAGATGCCTGCTATAATTGCAAAGTCCATATCTATTCTGTCAGATG
rJMFF007O21+          TCAGATGGAATGTGCAGATGCCTGCTATAATTGCAAAGTCCATATNTATTCTGTCAGATG
                      ____________________________________________________________
consensus             TCAGATGGAATGTGCAGATGCCTGCTATAATTGCAAAGTCCATATCTATTCTGTCAGATG
 
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rJMSF008H12+          CAGGACTTGGCATGGCCATGTTCAGTCTTGGTCTGTTCATGGCATTGCAACCAAGGATCA
rJMFF022H06+          CAGGACTTGGCATGGCCATGTTCAGTCTTGGTCTGTTCATGGCATTGCAACCAAGGATCA
rJMFF007O21+          CAGGACTTGGCATGGCCATGTTCAGTCTTGGTCTGTTCATGGCATTGCAACCAAGGATCA
                      ____________________________________________________________
consensus             CAGGACTTGGCATGGCCATGTTCAGTCTTGGTCTGTTCATGGCATTGCAACCAAGGATCA
 
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rJMSF008H12+          TTGCATGTGGGAATTCTGTTGCATCTTTTGCTATGGCCGTGAGATTCCTTACAGGACCAG
rJMFF022H06+          TTGCATGTGGGAATTCTGTTGCATCTTTTGCTATGGCCGTGAGATTCCTTACAGGACCAG
rJMFF007O21+          TTGCATGTGGGAATTCTGTTGCATCTTTTGCTATGGCCGTGAGATTCCTTACAGGACCAG
                      ____________________________________________________________
consensus             TTGCATGTGGGAATTCTGTTGCATCTTTTGCTATGGCCGTGAGATTCCTTACAGGACCAG
 
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rJMSF008H12+          CTGTCATGGCTGCTGCCTCCATTGCTGTCGGCCTCCGAGGTGTCCTNTTACACGTCGCCA
rJMFF022H06+          CTGTCATGGCTGCTGCCTCCATTGCTGTCGGCCTCCGAGGTGTCCTNTTACACGTCGCCA
rJMFF007O21+          CTGTCATGGCTGCTGCCTCCATTGCTGTCGGCCTCCGAGGTGTCCTNTTACACGTCGCCA
                      ____________________________________________________________
consensus             CTGTCATGGCTGCTGCCTCCATTGCTGTCGGCCTCCGAGGTGTCCTNTTACACGTCGCCA
 
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rJMSF008H12+          TTGTACAGGCAGCTCTACCCCAAGGAATTGTCCCCTTTGTCTTCGCTAAGGAATACGGCG
rJMFF022H06+          TTGTACAGGCAGCTNTACCCCAAGGAATTGTCCCCTTTGTNTTCGCTAAGGAATACGGTG
rJMFF007O21+          TTGTACAGGCAGCTNTACCCCAAGGAATTGTCCCCTTTGTNTTCGCTAAGGAATACGGCG
                      ____________________________________________________________
consensus             TTGTACAGGCAGCTCTACCCCAAGGAATTGTCCCCTTTGTCTTCGCTAAGGAATACGGCG
 
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rJMSF008H12+          TGCACCCTGACATTNTCAGCACTGCGGTGATATTCGGGATGCTGATTGCGTTACCGATAA
rJMFF022H06+          TGCACCCTGACATTNTCAGCACTGCGGTGATATTCGGGATGCTGATTGCGTTACCGATAA
rJMFF007O21+          TGCACCCTGACATTNTCAGCACTGCGGTGATATTCGGGATGCTGATTGCGTTACCGATAA
                      ____________________________________________________________
consensus             TGCACCCTGACATTNTCAGCACTGCGGTGATATTCGGGATGCTGATTGCGTTACCGATAA
 
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rJMSF008H12+          CGTTGGTGTACTACATTTTGATGGGACTATGAAACATGGAAAATTGATAAGAAAGTAATA
rJMFF022H06+          CGTTGGTGTACTACATTTTGATGGGACTATGAAACATGGAAAATTGATAAGAAAGTAATA
rJMFF007O21+          CGTTGGTGTACTACATTTTGATGGGACTATGAAACATGGAAAATTGATAAGAAAGTAATA
                      ____________________________________________________________
consensus             CGTTGGTGTACTACATTTTGATGGGACTATGAAACATGGAAAATTGATAAGAAAGTAATA
 
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rJMSF008H12+          TGCAAAAACGAATTGAAGCTAGCTAGCTAGGAGGGCTACTCTCAAGTCTCAAGGATATGA
rJMFF022H06+          TGCAAAAACGAATTGAAGCTAGCTAGCTAGGAGGGCTACTCTCAAGTCTCAAGGATATGA
rJMFF007O21+          TGCAAAAACGAATTGAAGCTAGCTAGCTAGGAGGGCTACTCTCAAGTCTCAAGGATATGA
                      ____________________________________________________________
consensus             TGCAAAAACGAATTGAAGCTAGCTAGCTAGGAGGGCTACTCTCAAGTCTCAAGGATATGA
 
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rJMSF008H12+          TGATTCAATTCCTCTCTCGATCGATCTAGTCTTAGTATAGTTGTAAAATCATATATGTTT
rJMFF022H06+          TGATTCAATTCCTCTCTCGATCGATCTAGTCTTAGTATAGTTGTAAAATCATATATGTTT
rJMFF007O21+          TGATTCAATTCCTCTCTCGATCGATCTAGTCTTAGTATAGTTGTAAAATCATATATGTTT
                      ____________________________________________________________
consensus             TGATTCAATTCCTCTCTCGATCGATCTAGTCTTAGTATAGTTGTAAAATCATATATGTTT
 
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rJMSF008H12+          CTCCCCATTTGTTTGATCAACCCAAAAACAAAACCAAAAAAAAAATT             
rJMFF022H06+          CTCCCCATTTGTTTGATCAACCCAAAAACAAAACCAAAAAAAAAATTTGGTAGTTTAT  
rJMFF007O21+          CTCCCCATTTGTTTGATCAACCCAAAAACAAAACCAAAAAAAAAATTTGGTAGTTTATTT
                      ____________________________________________________________
consensus             CTCCCCATTTGTTTGATCAACCCAAAAACAAAACCAAAAAAAAAATTTGGTAGTTTATTT