Contig 010973:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005G12Sequence426000018 (2)ref|XP_002522038.1|2e-05Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis] gb|EEF4745010973 (2)ref|XP_009779240.1|1e-51PREDICTED: receptor-like protein kinase HAIKU2 [Nicotiana sylvestris]
JMFF028K13Sequence534000018 (2)ref|XP_002522038.1|3e-19Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis] gb|EEF4699010973 (2)ref|XP_006367082.1|1e-50PREDICTED: receptor-like protein kinase HAIKU2-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF005G12+                                             GGCCAAGATTTTGGAGGCCTCCATA
                      ____________________________________________________________
consensus                                                GGCCAAGATTTTGGAGGCCTCCATA
 
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rJMFF028K13+                               GGCATACCAGGGACGTACGGTTATATTGCACCAGAATAC
rJMFF005G12+          GCCTATACTGACACTTCATGTGGCATACCAGGGACGTACGGTTATATTGCACCAGAATAC
                      ____________________________________________________________
consensus             GCCTATACTGACACTTCATGTGGCATACCAGGGACGTACGGTTATATTGCACCAGAATAC
 
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rJMFF028K13+          GCTTACACGAGCAAAGTGAACGAGAAGAGCGACGTGTACAGCTTTGGCGTAGTGTTGATG
rJMFF005G12+          GCTTACACGAGCAAAGTGAACGAGAAGAGCGACGTGTACAGCTTTGGCGTAGTGTTGATG
                      ____________________________________________________________
consensus             GCTTACACGAGCAAAGTGAACGAGAAGAGCGACGTGTACAGCTTTGGCGTAGTGTTGATG
 
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rJMFF028K13+          GAACTGGTGACAGGGAAGAAGCCGATGGAGGCAGAATTTGGGGAGGACAATAATATAGCT
rJMFF005G12+          GAACTGGTGACAGGGAAGAAGCCGATGGAGGCAGAATTTGGGGAGGACAATAATATAGCT
                      ____________________________________________________________
consensus             GAACTGGTGACAGGGAAGAAGCCGATGGAGGCAGAATTTGGGGAGGACAATAATATAGCT
 
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rJMFF028K13+          CAGTGGGTATGTAGCAGGGTGATGGGAAACAAAGAGAGCATGGTGGACATGGTGGATTCC
rJMFF005G12+          CAGTGGGTATGTAGCAGGGTGATGGGAAACAAAGAGAGCATGGTGGACATGGTGGATTCC
                      ____________________________________________________________
consensus             CAGTGGGTATGTAGCAGGGTGATGGGAAACAAAGAGAGCATGGTGGACATGGTGGATTCC
 
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rJMFF028K13+          AGCTTTTCAGTAGGGTTCAAAGAAGATGCTGTCAAGGTTCTGAAGATTGCAATGCATTGT
rJMFF005G12+          AGCTTTTCAGTAGGGTTCAAAGAAGATGCTGTCAAGGTTCTGAAGATTGCAATGCATTGT
                      ____________________________________________________________
consensus             AGCTTTTCAGTAGGGTTCAAAGAAGATGCTGTCAAGGTTCTGAAGATTGCAATGCATTGT
 
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rJMFF028K13+          ACTGCTAGGCTTCCATCACTGAGACCTTCCATGAGGATGGTAGTCCAGATGCTGGAAGAT
rJMFF005G12+          ACTGCTAGGCTTCCATCACTGAGACCTTCCATGAGGATGGTAGTCCAGATGCTGGAAGAT
                      ____________________________________________________________
consensus             ACTGCTAGGCTTCCATCACTGAGACCTTCCATGAGGATGGTAGTCCAGATGCTGGAAGAT
 
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rJMFF028K13+          GCTGACCCCTGTAAGCTCACAGGCATAGTTGTGAACTCTGAGGATGATAATGAGAAATTC
rJMFF005G12+          GCTGACCCCTGTAAGCTCACAGGCATAGTTGTGAACTCTGAGGATGATAATGAGAAATTC
                      ____________________________________________________________
consensus             GCTGACCCCTGTAAGCTCACAGGCATAGTTGTGAACTCTGAGGATGATAATGAGAAATTC
 
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rJMFF028K13+          TGAGGCCAAATCTTCAAGTTCTGGATGTTCAAACTAGGGTTCATTCAACTGGGAAATCAA
rJMFF005G12+          TGAGGCCAAATCTTCAAGTTCTGGATGTTCAAACTAGGGTTCATTCAACTGGGAAATCAA
                      ____________________________________________________________
consensus             TGAGGCCAAATCTTCAAGTTCTGGATGTTCAAACTAGGGTTCATTCAACTGGGAAATCAA
 
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rJMFF028K13+          GATCGAGTACAATTTTCCCCGGTGATAATAGGAACCTCAGTCCTATACCAATAGGATTCT
rJMFF005G12+          GATCGAGTACAATTTTCCCCGGTGATAATAGGAACCTCAGTCCTATACCAATAGGATTCT
                      ____________________________________________________________
consensus             GATCGAGTACAATTTTCCCCGGTGATAATAGGAACCTCAGTCCTATACCAATAGGATTCT
 
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rJMFF028K13+          AGTTTTGGTCCAACCTTATATAAAATGCTCTTTTGAAGTGCTATTAGATATTAGATAGTT
rJMFF005G12+          AGTTTTGGTCCAACCTTATATAAAATGCTCTTTTGAAGTGCTATTAGATATTAGATAGTT
                      ____________________________________________________________
consensus             AGTTTTGGTCCAACCTTATATAAAATGCTCTTTTGAAGTGCTATTAGATATTAGATAGTT
 
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rJMFF028K13+          TAAGTTAAGATTCTGTTTTCTAGAAGTGAATGGAATGTAATTCAAAAATGCATGTTGTCC
rJMFF005G12+          TAAGTTAAGATTCTGTTTTCTAGAAGTGAATGGAATGTAATTCAAAAATGCATGTTGTCC
                      ____________________________________________________________
consensus             TAAGTTAAGATTCTGTTTTCTAGAAGTGAATGGAATGTAATTCAAAAATGCATGTTGTCC
 
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rJMFF028K13+          CATTCACACAGCTTTGTATAGAAATTGTATATTTATATAGTGTGTATTAAAGCATCTCAA
rJMFF005G12+          CATTCACACAGCTTTGTATAGAAATTGTATATTTATATAGTGTGTATTAAAGCATCTCAA
                      ____________________________________________________________
consensus             CATTCACACAGCTTTGTATAGAAATTGTATATTTATATAGTGTGTATTAAAGCATCTCAA