| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003J12 | Sequence | 599 | 010965 (8) | ref|XP_009778082.1| | 8e-51 | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Nicotiana sylvestris] | 703 | 010965 (8) | ref|XP_011082360.1| | 3e-65 | PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Sesamum indicum] |
| JMSF024J04 | Sequence | 671 | 010965 (8) | ref|XP_009778082.1| | 6e-63 | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Nicotiana sylvestris] | 758 | 010965 (8) | ref|XP_011082360.1| | 2e-85 | PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Sesamum indicum] |
| JMSF027B01 | Sequence | 665 | 010965 (8) | ref|XP_009778082.1| | 4e-63 | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Nicotiana sylvestris] | 667 | 010965 (8) | ref|XP_011082360.1| | 5e-74 | PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Sesamum indicum] |
| JMSF044D14 | Sequence | 722 | 010965 (8) | ref|XP_009778082.1| | 2e-74 | PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Nicotiana sylvestris] | 760 | 010965 (8) | ref|XP_011082360.1| | 8e-86 | PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
JMSF024J04- G
JMSF044D14- GGTGGG
____________________________________________________________
consensus GGTGGG
. : . : . : . : . : . :
JMSF024J04- CAACAGCAATGGCTGCAATTGAGGGAGCATTCTCCATCGTCTCATCTTCCTACCCTTCTT
JMSF027B01- GCAATGGCTGCAATTGAGGGAGCATTCTCCATCGTCTCATCTTCCTACCCTTCTT
JMFF003J12- GCAATGGCTGCAATTGAGGGAGCATTCTCCATCGTCTCATCTTCCTACCCTTCTT
JMSF044D14- CAACAGCAATGGCTGCAATTGAGGGAGCATTCTCCATCGTCTCATCTTCCTACCCTTCTT
____________________________________________________________
consensus CAACAGCAATGGCTGCAATTGAGGGAGCATTCTCCATCGTCTCATCTTCCTACCCTTCTT
. : . : . : . : . : . :
JMSF024J04- CTACTTCTCCCAAATTCCAATCTTTTTCTAAACCTCTTAGGCTGCAAATTTCCCCCAATT
JMSF027B01- CTACTTCTCCCAAATTCCAATCTTTTTCTAAACCTCTTAGGCTGCAAATTTCCCCCAATT
JMFF003J12- CTACTTCTCCCAAATTCCAATCTTTTTCTAAACCTCTTAGGCTGCAAATTTCCCCCAATT
JMSF044D14- CTACTTCTCCCAAATTCCAATCTTTTTCTAAACCTCTTAGGCTGCAAATTTCCCCCAATT
____________________________________________________________
consensus CTACTTCTCCCAAATTCCAATCTTTTTCTAAACCTCTTAGGCTGCAAATTTCCCCCAATT
. : . : . : . : . : . :
JMSF024J04- ACCCCACTCTTTCCCTTAAATCCCTTATGCGCTCCCTCCCTTCCCTCGCCTCAACAAAAC
JMSF027B01- ACCCCACTCTTTCCCTTAAATCCCTTATGCGCTCCCTCCCTTCCCTCGCCTCAACAAAAC
JMFF003J12- ACCCCACTCTTTCCCTTAAATCCCTTATGCGCTCCCTCCCTTCCCTCGCCTCAACAAAAC
JMSF044D14- ACCCCACTCTTTCCCTTAAATCCCTTATGCGCTCCCTCCCTTCCCTCGCCTCAACAAAAC
____________________________________________________________
consensus ACCCCACTCTTTCCCTTAAATCCCTTATGCGCTCCCTCCCTTCCCTCGCCTCAACAAAAC
. : . : . : . : . : . :
JMSF024J04- TCAAAACCTCTCATATACTACGCTGCTCCACCGTTGAAGAACAGGCAGTCGTTGCAGTAG
JMSF027B01- TCAAAACCTCTCATATACTACGCTGCTCCACCGTTGAAGAACAGGCAGTCGTTGCAGTAG
JMFF003J12- TCAAAACCTCTCATATACTACGCTGCTCCACCGTTGAAGAACAGGCAGTCGTTGCAGTAG
JMSF044D14- TCAAAACCTCTCATATACTACGCTGCTCCACCGTTGAAGAACAGGCAGTCGTTGCAGTAG
rJMSF024J04+ AAGAACAGGCNGTCGNTGCAGTAG
rJMSF044D14+ ACAGGCAGTCGTTGCAGTAG
____________________________________________________________
consensus TCAAAACCTCTCATATACTACGCTGCTCCACCGTTGAAGAACAGGCAGTCGTTGCAGTAG
. : . : . : . : . : . :
JMSF024J04- AAACAGAGCAAGAGAAAACCCCAAAACCCAATCTGAGAAGAAAGCTTTTTGTGCTCAATT
JMSF027B01- AAACAGAGCAAGAGAAAACCCCAAAACCCAATCTGAGAAGAAAGCTTTTTGTGCTCAATT
JMFF003J12- AAACAGAGCAAGAGAAAACCCCAAAACCCAATCTGAGAAGAAAGCTTTTTGTGCTCAATT
JMSF044D14- AAACAGAGCAAGAGAAAACCCCAAAACCCAATCTGAGAAGAAAGCTTTTTGTGCTCAATT
rJMSF024J04+ AAACAGAGCAAGAGAAANCCCCAAAACCCCATCTGAGAAGAAAGCTTTTTGTGCTCAATT
rJMSF044D14+ AAACAGAGCAAGAGAAAACCCCAAAACCCAATCTGAGAAGAAAGCTTTTTGTGCTCAATT
____________________________________________________________
consensus AAACAGAGCAAGAGAAAACCCCAAAACCCAATCTGAGAAGAAAGCTTTTTGTGCTCAATT
. : . : . : . : . : . :
JMSF024J04- TGCCTTGGTCTCTCGCCGTCTCCGATGTCAAGGAACTCTTTGGCCAGTGTGGAACTGTTG
JMSF027B01- TGCCTTGGTCTCTCGCCGTCTCCGATGTCAAGGAACTCTTTGGCCAGTGTGGAACTGTTG
JMFF003J12- TGCCTTGGTCTCTCGCCGTCTCCGATGTCAAGGAACTCTTTGGCCAGTGTGGAACTGTTG
JMSF044D14- TGCCTTGGTCTCTCGCCGTCTCCGATGTCAAGGAACTCTTTGGCCAGTGTGGAACTGTTG
rJMSF024J04+ TGCCTTGGTCTCTCGCCGTCTCCGATGTCAAGGAACTCTTTGGCCAGTGTGGAACTGTTG
rJMSF044D14+ TGCCTTGGTCTCTCGCCGTCTCCGATGTCAAGGAACTCTTTGGCCAGTGTGGAACTGTTG
rJMSF027B01+ TCTCCGATGTCAAGGAACTCTTTGGCCAGTGTGGAACTGTTG
rJMFF003J12+ CGTCTCCGATGTCAAGGAACTCTTTGGCCAGTGTGGAACTGTTG
____________________________________________________________
consensus TGCCTTGGTCTCTCGCCGTCTCCGATGTCAAGGAACTCTTTGGCCAGTGTGGAACTGTTG
. : . : . : . : . : . :
JMSF024J04- A-GGATGTTGAGTTTATAAAAACGAAAGAAGGGCAGAACAGAGGCTTTGCATTTGTGACA
JMSF027B01- A-GGATGTTGAGTTTATAAAAACGAAAGAAGGGCAGAACAGAGGCTTTGCATTTGTGACA
JMFF003J12- A-GGATGTTGAGTTTATAAAAACGAAAGAAGGGCAGAACAGAGGCTTTGCATTTGTGACA
JMSF044D14- A-GGATGTTGAGTTTATAAAAACGAAAGAAGGGCAGAACAGAGGCTTTGCATTTGTGACA
rJMSF024J04+ A-GGATGTTGAGTTTATAAAAACGAAAGAAGGGCAGAACAGAGGCTTTGCATTTGTGACA
rJMSF044D14+ A-GGATGTTGAGTTTATAAAAACGAAAGAAGGGCAGAACAGAGGCTTTGCATTTGTGACA
rJMSF027B01+ A-GGATGTTGAGTTTATAAAAACGAAAGAAGGGCAGAACAGAGGCTTTGCATTTGTGACA
rJMFF003J12+ AGGGATGTTGAGTTTATAAAAACGAAAGAAGGGCAGAACAGAGGCTTTGCATTTGTGACA
____________________________________________________________
consensus A-GGATGTTGAGTTTATAAAAACGAAAGAAGGGCAGAACAGAGGCTTTGCATTTGTGACA
. : . : . : . : . : . :
JMSF024J04- ATGGCTTCTGGGGAGGAGGCTGAGGCTGCAATTCAGAAATTCAACTCTTATGAGTTATCG
JMSF027B01- ATGGCTTCTGGGGAGGAGGCTGAGGCTGCAATTCAGAAATTCAACTCTTATGAGTTATCG
JMFF003J12- ATGGCTTCTGGGGAGGAGGCTGAGGCTGCAATTCAGAAATTCAACTCTTATGAGTTATCG
JMSF044D14- ATGGCTTCTGGGGAGGAGGCTGAGGCTGCAATTCAGAAATTCAACTCTTATGAGTTATCG
rJMSF024J04+ ATGGCTTCTGGGGAGGAGGCTGAGGCTGCAATTCAGAAATTCAACTCTTATGAGTTATCG
rJMSF044D14+ ATGGCTTCTGGGGAGGAGGCTGAGGCTGCAATTCAGAAATTCAACTCTTATGAGTTATCG
rJMSF027B01+ ATGGCTTCTGGGGAGGAGGCTGAGGCTGCAATTCAGAAATTCAACTCTTATGAGTTATCG
rJMFF003J12+ ATGGCTTCTGGGGAGGAGGCTGAGGCTGCAATTCAGAAATTCAACTCTTATGAGTTATCG
____________________________________________________________
consensus ATGGCTTCTGGGGAGGAGGCTGAGGCTGCAATTCAGAAATTCAACTCTTATGAGTTATCG
. : . : . : . : . : . :
JMSF024J04- GGAAGGACTATCAGGGTGGAGTACTCAAAGAAATTCAAGAAACCGATCAGATCTCCTCCC
JMSF027B01- GGAAGGACTATCAGGGTGGAGTACTCAAAGAAATTCAAGAAACCGATCAGATCTCCTCCC
JMFF003J12- GGAAGGACTATCAGGGTGGAGTACTCAAAGAAATTCAAGAAACCGATCAGATCTCCTCCC
JMSF044D14- GGAAGGACTATCAGGGTGGAGTACTCAAAGAAATTCAAGAAACCGATCAGATCTCCTCCC
rJMSF024J04+ GGAAGGACTATCAGGGTGGAGTACTCAAAGAAATTCAAGAAACCGATCAGATCTCCTCCC
rJMSF044D14+ GGAAGGACTATCAGGGTGGAGTACTCAAAGAAATTCAAGAAACCGATCAGATCTCCTCCC
rJMSF027B01+ GGAAGGACTATCAGGGTGGAGTACTCAAAGAAATTCAAGAAACCGATCAGATCTCCTCCC
rJMFF003J12+ GGAAGGACTATCAGGGTGGAGTACTCAAAGAAATTCAAGAAACCGATCAGATCTCCTCCC
____________________________________________________________
consensus GGAAGGACTATCAGGGTGGAGTACTCAAAGAAATTCAAGAAACCGATCAGATCTCCTCCC
. : . : . : . : . : . :
JMSF024J04- CCTCCTCCCCCTAGAGATGGGCGTTATAAACTTTATGTATCTAACCTCGCATGGAAAGCA
JMSF027B01- CCTCCTCCCCCTAGAGATGGGCGTTATAAACTTTATGTATCTAACCTCGCATGGAAAGCA
JMFF003J12- CCTCCTCCCCCTAGAGATGGGCGTTATAAACTTTATGTATCTAACCTCGCATGGAAA
JMSF044D14- CCTCCTCCCCCTAGAGATGGGCGTTATAAACTTTATGTATCTAACCTCGCATGGAAAGCA
rJMSF024J04+ CCTCCTCCCCCTAGAGATGGGCGTTATAAACTTTATGTATCTAACCTCGCATGGAAAGCA
rJMSF044D14+ CCTCCTCCCCCTAGAGATGGGCGTTATAAACTTTATGTATCTAACCTCGCATGGAAAGCA
rJMSF027B01+ CCTCCTCCCCCTAGAGATGGGCGTTATAAACTTTATGTATCTAACCTCGCATGGAAAGCA
rJMFF003J12+ CCTCCTCCCCCTAGAGATGGGCGTTATAAACTTTATGTATCTAACCTCGCATGGAAAGCA
____________________________________________________________
consensus CCTCCTCCCCCTAGAGATGGGCGTTATAAACTTTATGTATCTAACCTCGCATGGAAAGCA
. : . : . : . : . : . :
JMSF024J04- AGGTCTACTCATCTGANGGAGTTGTTCTCGGCCAACTTCAATCCAATTTCGGCTAGGGTT
JMSF027B01- AGGTCTACTCATCTGAGGGAGTTGTTCTCGGCCAACTTCANTCCAATTTCGGCTAGGGTT
JMSF044D14- AGGTCTACTCATCTGAGGGAGTTGTTCTCGGCCAACTTCAATCCAATTTCGGCTAGGGTT
rJMSF024J04+ AGGTCTACTCATCTGAGGGAGTTGTTCTCGGCCAACTTCAATCCAATTTCGGCTAGGGTT
rJMSF044D14+ AGGTCTACTCATCTGAGGGAGTTGTTCTCGGCCAACTTCAATCCAATTTCGGCTAGGGTT
rJMSF027B01+ AGGTCTACTCATCTGAGGGAGTTGTTCTCGGCCAACTTCAATCCAATTTCGGCTAGGGTT
rJMFF003J12+ AGGTCTACTCATCTGAGGGAGTTGTTCTCGGCCAACTTCAATCCAATTTCGGCTAGGGTT
____________________________________________________________
consensus AGGTCTACTCATCTGAGGGAGTTGTTCTCGGCCAACTTCAATCCAATTTCGGCTAGGGTT
. : . : . : . : . : . :
JMSF024J04- GTGTTT
JMSF027B01- GTGTTTGAA
JMSF044D14- GTGTTTGAAAATGCTTCAGGAAAATCAGCTGGGTATGGTTTTGTCGCATTTGGGACA
rJMSF024J04+ GTGTTTGAAAATGCTTCAGGAAAATCAGCTGGGTATGGTTTTGTCGCATTTGGGACAAAA
rJMSF044D14+ GTGTTTGAAAATGCTTCAGGAAAATCAGCTGGGTATGGTTTTGTCGCATTTGGGACAAAA
rJMSF027B01+ GTGTTTGAAAATGCTTCAGGAAAATCAGCTGGGTATGGTTTTGTCGCATTTGGGACAAAA
rJMFF003J12+ GTGTTTGAAAATGCTTCAGGAAAATCAGCTGGGTATGGTTTTGTCGCATTTGGGACAAAA
____________________________________________________________
consensus GTGTTTGAAAATGCTTCAGGAAAATCAGCTGGGTATGGTTTTGTCGCATTTGGGACAAAA
. : . : . : . : . : . :
rJMSF024J04+ GAAGAAGCGGAGGCTGCAATTTCTTCTATTGATGGAACGGAATTGTTGGGCAGACCAATT
rJMSF044D14+ GAAGAAGCGGAGGCTGCAATTTCTTCTATTGATGGAACGGAATTGTTGGGCAGACCAATT
rJMSF027B01+ GAAGAAGCGGAGGCTGCAATTTCTTCTATTGATGGAACGGAATTGTTGGGCAGACCAATT
rJMFF003J12+ GAAGAAGCGGAGGCTGCAATTTCTTCTATTGATGGAACGGAATTGTTGGGCAGACCAATT
____________________________________________________________
consensus GAAGAAGCGGAGGCTGCAATTTCTTCTATTGATGGAACGGAATTGTTGGGCAGACCAATT
. : . : . : . : . : . :
rJMSF024J04+ CGCTTAAAAATGAGTGAAAAGAATGATGATCCGGAAGAAGAAGAAACAGCTGATGAACAA
rJMSF044D14+ CGCTTAAAAATGAGTGAAAAGAATGATGATCCGGAAGAAGAAGAAACAGCTGATGAACAA
rJMSF027B01+ CGCTTAAAAATGAGTGAAAAGAATGATGATCCGGAAGAAGAAGAAACAGCTGATGAACAA
rJMFF003J12+ CGCTTAAAAATGAGTGAAAAGAATGATGATCCGGAAGAAGAAGAAACAGCTGATGAACAA
____________________________________________________________
consensus CGCTTAAAAATGAGTGAAAAGAATGATGATCCGGAAGAAGAAGAAACAGCTGATGAACAA
. : . : . : . : . : . :
rJMSF024J04+ CCTGAAGAATCATAGGTGAGCAGATTAAACTATTTGTCCTACATATATGCTACGTATATG
rJMSF044D14+ CCTGAAGAATCATAGGTGAGCAGATTAAACTATTTGTCCTACATATATGCTACGTATATG
rJMSF027B01+ CCTGAAGAATCATAGGTGAGCAGATTAAACTATTTGTCCTACATATATGCTACGTATATG
rJMFF003J12+ CCTGAAGAATCATAGGTGAGCAGATTAAACTATTTGTCCTACATATATGCTACGTATATG
____________________________________________________________
consensus CCTGAAGAATCATAGGTGAGCAGATTAAACTATTTGTCCTACATATATGCTACGTATATG
. : . : . : . : . : . :
rJMSF024J04+ TACGTTTTGACAAATACCATTGTAGAAAATACAATTTCTTCCTTAATTATCTTC
rJMSF044D14+ TACGTTTTGACAAATA-CATTGTAGAAAATACAATTTCTTCCTTAATTATCTTC
rJMSF027B01+ TACGTTTTGACAAATA-CATTGTAGAAAATACAATTTCTTCCTTAATTATCTTCATGTTT
rJMFF003J12+ TACGTTTTGACAAATA-CATTGTAGAAAATACAATTTCTTCCTTAATTATCTTCATGTTT
____________________________________________________________
consensus TACGTTTTGACAAATA-CATTGTAGAAAATACAATTTCTTCCTTAATTATCTTCATGTTT
. : . : . : . : . : . :
rJMSF027B01+ ATTAACAATATCCGAGTGGGTTTTGAC
rJMFF003J12+ ATTAACAATATCCGAGTGGGTTTTGACATTGTACTATATATGTATTGGTTTATACAGAAT
____________________________________________________________
consensus ATTAACAATATCCGAGTGGGTTTTGACATTGTACTATATATGTATTGGTTTATACAGAAT