clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF049D15 | Sequence | 663 | 010912 (2) | ref|XP_007039818.1| | 1e-20 | Uncharacterized protein isoform 2, partial [Theobroma cacao] ref|XP_007039819.1| | 622 | 010912 (2) | ref|XP_007039818.1| | 9e-21 | Uncharacterized protein isoform 2, partial [Theobroma cacao] ref|XP_007039819.1| |
This contig is upended
. : . : . : . : . : . :
rJMSF049D15+ GGT
JMSF049D15- GGT
____________________________________________________________
consensus GGT
. : . : . : . : . : . :
rJMSF049D15+ AAAACCCTAAACCCTAGTCCAAAAGCCTCGCCACGAATCTCCACTGTCAGCTCGACAAGC
JMSF049D15- AAAACCCTAAACCCTAGTCCAAAAGCCTCGCCACGAATCTCCACTGTCAGCTCGACAAGC
____________________________________________________________
consensus AAAACCCTAAACCCTAGTCCAAAAGCCTCGCCACGAATCTCCACTGTCAGCTCGACAAGC
. : . : . : . : . : . :
rJMSF049D15+ CGTAAATCTTCCCGTCTTTGCGGCTCTGCTTCAGCTTCAGCTTCAGCTTCTACTATTCCT
JMSF049D15- CGTAAATCTTCCCGTCTTTGCGGCTCTGCTTCAGCTTCAGCTTCAGCTTCTACTATTCCT
____________________________________________________________
consensus CGTAAATCTTCCCGTCTTTGCGGCTCTGCTTCAGCTTCAGCTTCAGCTTCTACTATTCCT
. : . : . : . : . : . :
rJMSF049D15+ TCGAAGATGGCTTCCAGATGCAGCAGAATCATCAATCGAGCTTCCATTTCCTCTATCAGA
JMSF049D15- TCGAAGATGGCTTCCAGATGCAGCAGAATCATCAATCGAGCTTCCATTTCCTCTATCAGA
____________________________________________________________
consensus TCGAAGATGGCTTCCAGATGCAGCAGAATCATCAATCGAGCTTCCATTTCCTCTATCAGA
. : . : . : . : . : . :
rJMSF049D15+ TCTGCAATTAAGCCCAAATTAGAATCCACTACGTCGTCGTTTCCCAAATCCTCTCTCCCG
JMSF049D15- TCTGCAATTAAGCCCAAATTAGAATCCACTACGTCGTCGTTTCCCAAATCCTCTCTCCCG
____________________________________________________________
consensus TCTGCAATTAAGCCCAAATTAGAATCCACTACGTCGTCGTTTCCCAAATCCTCTCTCCCG
. : . : . : . : . : . :
rJMSF049D15+ TCCAGATCAACTTCTTCTCCTCTTCGTCAATTCTCCTTCTCCAGGTGTCCGTCGGAGTTG
JMSF049D15- TCCAGATCAACTTCTTCTCCTCTTCGTCAATTCTCCTTCTCCAGGTGTCCGTCGGAGTTG
____________________________________________________________
consensus TCCAGATCAACTTCTTCTCCTCTTCGTCAATTCTCCTTCTCCAGGTGTCCGTCGGAGTTG
. : . : . : . : . : . :
rJMSF049D15+ GGATGCGCGGCATCAATGTTGCCGCTGCACAGCGCCGTAGCTACGGCGAGGATGACGTCG
JMSF049D15- GGATGCGCGGCATCAATGTTGCCGCTGCACAGCGCCGTAGCTACGGCGAGGATGACGTCG
____________________________________________________________
consensus GGATGCGCGGCATCAATGTTGCCGCTGCACAGCGCCGTAGCTACGGCGAGGATGACGTCG
. : . : . : . : . : . :
rJMSF049D15+ TGCTTGAGCTCAACATCTAGGAACTGTAGAGCTCTTACACAGGGTACTCTCTGCTGCACC
JMSF049D15- TGCTTGAGCTCAACATCTAGGAACTGTAGAGCTCTTACACAGGGTACTCTCTGCTGCACC
____________________________________________________________
consensus TGCTTGAGCTCAACATCTAGGAACTGTAGAGCTCTTACACAGGGTACTCTCTGCTGCACC
. : . : . : . : . : . :
rJMSF049D15+ TCTCCAGGCCTCTAGCATGTTCTTTTATTAGTCCCAAATAACAAAAAAAAATGAAATTGA
JMSF049D15- TCTCCAGGCCTCTAGCATGTTCTTTTATTAGTCCCAAATAACAAAAAAAAATGAAATTGA
____________________________________________________________
consensus TCTCCAGGCCTCTAGCATGTTCTTTTATTAGTCCCAAATAACAAAAAAAAATGAAATTGA
. : . : . : . : . : . :
rJMSF049D15+ TGGAACGTGAACTCGTTTTTGCTGTTTCTGGTGGATCATCTGCTTGAATGTATCTTAACC
JMSF049D15- TGGAACGTGAACTCGTTTTTGCTGTTTCTGGTGGATCATCTGCTTGAATGTATCTTAACC
____________________________________________________________
consensus TGGAACGTGAACTCGTTTTTGCTGTTTCTGGTGGATCATCTGCTTGAATGTATCTTAACC
. : . : . : . : . : . :
rJMSF049D15+ TCAAGGAATTATAAGAGTAGTTTTCCACCATTCTTGGAAGAGATTTTTTTGTACAAGAAA
JMSF049D15- TCAAGGAATTATAAGAGTAGTTTTCCACCATTCTTGGAAGAGATTTTTTTGTACAAGAAA
____________________________________________________________
consensus TCAAGGAATTATAAGAGTAGTTTTCCACCATTCTTGGAAGAGATTTTTTTGTACAAGAAA
. : . : . : . : . : . :
rJMSF049D15+ TCATATTTGTAAAAA
JMSF049D15- TCATATTTGTTAAAAATTTCTATAAAGATTGATTCATGTTTTTAGTACCCAAAAAAAAAA
____________________________________________________________
consensus TCATATTTGTTAAAAATTTCTATAAAGATTGATTCATGTTTTTAGTACCCAAAAAAAAAA