Contig 010878:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF035F12Sequence661010878 (2)ref|XP_010102430.1|2e-41hypothetical protein L484_000998 [Morus notabilis] gb|EXB93439.1| hypothetical p683008639 (2)ref|XP_002311607.1|8e-52hypothetical protein POPTR_0008s14910g [Populus trichocarpa] gb|EEE88974.1| hypo
JMSF045B15Sequence764010878 (2)ref|XP_010102430.1|9e-51hypothetical protein L484_000998 [Morus notabilis] gb|EXB93439.1| hypothetical p696008639 (2)ref|XP_002311607.1|4e-73hypothetical protein POPTR_0008s14910g [Populus trichocarpa] gb|EEE88974.1| hypo

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045B15+                           ACTGTCACCCTTTTACCTGGGTCAATGACTTGATCAATCTGTAC
                      ____________________________________________________________
consensus                             ACTGTCACCCTTTTACCTGGGTCAATGACTTGATCAATCTGTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035F12+                            CATCGACCAGTGTTCCTCCAGAATTTGGATGCCGATCCCTTAG
JMSF045B15+           ATTCTTGCTAAGCCCCACATCGACCAGTGTTCCTCCAGAATTTGGATGCCGATCCCTTAG
                      ____________________________________________________________
consensus             ATTCTTGCTAAGCCCCACATCGACCAGTGTTCCTCCAGAATTTGGATGCCGATCCCTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035F12+           TGTGACACCTTCTCGATAAGGAGCCCATTCATGCTTCCGCAAATGGTGTGGGGCATCAAG
JMSF045B15+           TGTGACACCTTCTCGATAAGGAGCCCATTCATGCTTCCGCAAATGGTGTGGGGCATCAAG
                      ____________________________________________________________
consensus             TGTGACACCTTCTCGATAAGGAGCCCATTCATGCTTCCGCAAATGGTGTGGGGCATCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035F12+           TGGGGGTAATGAACCCTCAAAATCATCAAAAGAAATGCTGCACCACTTTCATTTTCATCT
JMSF045B15+           TGGGGGTAATGAACCCTCAAAATCATCAAAAGAAATGCTGCACCACTTTCATTTTCATCT
                      ____________________________________________________________
consensus             TGGGGGTAATGAACCCTCAAAATCATCAAAAGAAATGCTGCACCACTTTCATTTTCATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035F12+           AAATTATCCTCTGAAAGTACACTAGAACTATCTTGTGAATTGCCCATGTTGTCAAATACA
JMSF045B15+           AAATTATCCTCTGAAAGTACACCAGAACTATCTTGTGAATTGCCCATGTTGTCAAATACA
                      ____________________________________________________________
consensus             AAATTATCCTCTGAAAGTACACTAGAACTATCTTGTGAATTGCCCATGTTGTCAAATACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035F12+           ACAACCTCATTTATCCTGAAAATGGTTGCAGCTCGAGCAATTTGGCCAGCCAGTCGGGTG
JMSF045B15+           ACAACCTCATTTATCCTGAAAATGGTTGCAGCTCGAGCAATTTGGCCAGCCAGTCGGGTG
                      ____________________________________________________________
consensus             ACAACCTCATTTATCCTGAAAATGGTTGCAGCTCGAGCAATTTGGCCAGCCAGTCGGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035F12+           GCCAGTTCCAGGGACTGTGCATTGTCGATAATGGAACCAGGGAGGGCAATGGAGACTGTA
JMSF045B15+           GCCAGTTCCAGGGACTGTGCATTGTCGATAATGGAACCAGGGAGGGCAATGGAGACTGTA
                      ____________________________________________________________
consensus             GCCAGTTCCAGGGACTGTGCATTGTCGATAATGGAACCAGGGAGGGCAATGGAGACTGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035F12+           GGCAGTTCATTTGAAACGGCGCCATTCCTTTCCTTCAATTTTTCCTTTTTCTTCTTCTTG
JMSF045B15+           GGCAGTTCATTTGAAACGGCGCCATTCCTTTCCTTCAATTTTTCCTTTTTCTTCTTCTTG
                      ____________________________________________________________
consensus             GGCAGTTCATTTGAAACGGCGCCATTCCTTTCCTTCAATTTTTCCTTTTTCTTCTTCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035F12+           TCTTTGGAATCACTATTCACAACCTCTGCTTCAATCTCAGGTCTACTTTTCTCTGCATCC
JMSF045B15+           TCTTTGGAATCACTATTCACAACCTCTGCTTCAATCTCAGGTCTACTTTTCTCTGCATCC
                      ____________________________________________________________
consensus             TCTTTGGAATCACTATTCACAACCTCTGCTTCAATCTCAGGTCTACTTTTCTCTGCATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035F12+           TGTGCTTCCACTACTCGTTCGACTCTCTCCTCTTTCTTCTCCTTCTTCTTCTTCTTCTTT
JMSF045B15+           TGTGCTTCCACTACTCGTTCGACTCTCTCCTCTTTCTTCTCCTTCTTCTTCTTCTTCTTT
                      ____________________________________________________________
consensus             TGTGCTTCCACTACTCGTTCGACTCTCTCCTCTTTCTTCTCCTTCTTCTTCTTCTTCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035F12+           TTCTCCCTTCTTTTCTCATCGCGGTCGCCATTAA-GAGCTTGAGCTCAAGATCGTTCTTA
JMSF045B15+           TTCTCCCTTCTTTTCTCATCGCGGTCGCCATTAACAAGCTTGAGCTCAAGATCGTTCTTA
                      ____________________________________________________________
consensus             TTCTCCCTTCTTTTCTCATCGCGGTCGCCATTAACGAGCTTGAGCTCAAGATCGTTCTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035F12+           TTGATATTGCCTGCATTTTGAGCCAGCTCTACTTCGGCTTCTCTTTCGGTTCTCTTCTTT
JMSF045B15+           TTGATATTGCCTGCATTTTGAGCCAGCTCTACTTCGGCTTCTCTTTCGGTTCTCTTCTTT
                      ____________________________________________________________
consensus             TTGATATTGCCTGCATTTTGAGCCAGCTCTACTTCGGCTTCTCTTTCGGTTCTCTTCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035F12+           CCCATTTCGACGTCGC                                            
JMSF045B15+           CCCATTTCGACGTCGCTCAATTTCGCGAGGGACAAGTAGAGAGGGTTTTTAGGGTTTTTT
                      ____________________________________________________________
consensus             CCCATTTCGACGTCGCTCAATTTCGCGAGGGACAAGTAGAGAGGGTTTTTAGGGTTTTTT