Contig 010877:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032H09Sequence591010877 (6)ref|XP_009773983.1|1e-82PREDICTED: thymidine kinase isoform X3 [Nicotiana sylvestris]697010877 (6)ref|XP_004293451.1|5e-71PREDICTED: thymidine kinase [Fragaria vesca subsp. vesca]
JMSF041D03Sequence752010877 (6)ref|XP_009625291.1|1e-107PREDICTED: thymidine kinase isoform X3 [Nicotiana tomentosiformis]709010877 (6)ref|XP_004293451.1|2e-71PREDICTED: thymidine kinase [Fragaria vesca subsp. vesca]
JMSF044M08Sequence793010877 (6)ref|XP_009773983.1|1e-98PREDICTED: thymidine kinase isoform X3 [Nicotiana sylvestris]772010877 (6)ref|XP_009625291.1|7e-61PREDICTED: thymidine kinase isoform X3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF044M08-                                            TTTCAACACATATTCTTATGTCTAAA
                      ____________________________________________________________
consensus                                               TTTCAACACATATTCTTATGTCTAAA
 
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rJMSF044M08-          GATGTCCTCTGCACCATATATCTACACAAATTGAACATCATGCGCTAACTGCATTACGAA
                      ____________________________________________________________
consensus             GATGTCCTCTGCACCATATATCTACACAAATTGAACATCATGCGCTAACTGCATTACGAA
 
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rJMSF044M08-          GCTAAGAAGCATAGACGGAAAATTACATTTTTTGTTTCTAAGTACAAGATAATTATAGGA
rJMSF041D03-              AGAAGCATAGACGGAAAATTACATTTTTTGTTTCTAAGTACAAGATAATTATAGGA
                      ____________________________________________________________
consensus             GCTAAGAAGCATAGACGGAAAATTACATTTTTTGTTTCTAAGTACAAGATAATTATAGGA
 
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rJMSF044M08-          TTCGTCACTACTTGTTCAATGTTAGTTATCGCTTAGAAACGAAAAAGTAAGGACGAAACC
rJMSF041D03-          TTCGTCACTACTTGTTCAATGTTAGTTATCGCTTAGAAACGAAAAAGTAAGGACGAAACC
                      ____________________________________________________________
consensus             TTCGTCACTACTTGTTCAATGTTAGTTATCGCTTAGAAACGAAAAAGTAAGGACGAAACC
 
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rJMSF044M08-          TACAATTATCTTATAACTTAGGACGAAAAGTACAATTTTTCCAAAGATATTACAAACATG
rJMFF032H09-                            TAGGATGAAAAGTACAATTTTTCCAAAGATATTACAAACATG
rJMSF041D03-          TACAATTATCTTATAACTTAGGACGAAAAGTACAATTTTTCCAAAGATATTACAAACATG
                      ____________________________________________________________
consensus             TACAATTATCTTATAACTTAGGACGAAAAGTACAATTTTTCCAAAGATATTACAAACATG
 
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rJMSF044M08-          GTAACGCTAAAAATCCCACAGAAGTGAACTAATAGGTCAGTTGTGGATACACCTGAGCTG
rJMFF032H09-          GTAACGCTAAAAATCCCACAGAAGTGAACTAATAGGTCAGTTGTGGATACACCTGAGCTG
rJMSF041D03-          GTAACGCTAAAAATCCCACAGAAGTGAACTAATAGGTCAGTTGTGGATACACCTGAGCTG
                      ____________________________________________________________
consensus             GTAACGCTAAAAATCCCACAGAAGTGAACTAATAGGTCAGTTGTGGATACACCTGAGCTG
 
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rJMSF044M08-          ATCAACGACTAACTACAGATCACGCTATAGCATCAGCAGTGTCGCAAAATTGAATGCGTT
rJMFF032H09-          ATCAACGACTAACTACAGATCACGCTATAGCATCAGCAGTGTCGCAAAATTGAATGCGTT
rJMSF041D03-          ATCAACGACTAACTACAGATCACGCTATAGCATCAGCAGTGTCGCAAAATTGAATGCGTT
                      ____________________________________________________________
consensus             ATCAACGACTAACTACAGATCACGCTATAGCATCAGCAGTGTCGCAAAATTGAATGCGTT
 
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rJMSF044M08-          CGACCTGCTGCTGAGATTCCAGGACATCTCTAGCGGCTTTTTTCAACCCTTGGCCACTCA
rJMFF032H09-          CGACCTGCTGCTGAGATTCCAGGACATCTCTAGCGGCTTTTTTCAACCCTTGGCCACTCA
rJMSF041D03-          CGACCTGCTGCTGAGATTCCAGGACATCTCTAGCGGCTTTTTTCAACCCTTGGCCACTCA
                      ____________________________________________________________
consensus             CGACCTGCTGCTGAGATTCCAGGACATCTCTAGCGGCTTTTTTCAACCCTTGGCCACTCA
 
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rJMSF044M08-          CATAGTGCTTCCGGCATACAGGCATATACACATCTGCCCCACCTATTATTTCTGTTCTCG
rJMFF032H09-          CATAGTGCTTCCGGCATACAGGCATATACACATCTGCCCCACCTATTATTTCTGTTCTCG
rJMSF041D03-          CATAGTGCTTCCGGCATACAGGCATATACACATCTGCCCCACCTATTATTTCTGTTCTCG
                      ____________________________________________________________
consensus             CATAGTGCTTCCGGCATACAGGCATATACACATCTGCCCCACCTATTATTTCTGTTCTCG
 
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rJMSF044M08-          TCTCCTCGGTCTTCCTAAGCGTAAAGTGTGCACACTTCCCACAAAGTTCGCATCGAGCTG
rJMFF032H09-          TCTCCTCGGTCTTCCTAAGCGTAAAGTGTGCACACTTCCCACAAAGTTCGCATCGAGCTG
rJMSF041D03-          TCTCCTCGGTCTTCCTAAGCGTAAAGTGTGCACACTTCCCACAAAGTTCGCATCGAGCTG
JMSF041D03+             TCCTCGGTCTTCCTAAGCGTAAAGTGTGCACACTTCCCACAAAGTTCGCATCGAGCTG
JMSF044M08+                                                          TCGCATCGAGCTG
                      ____________________________________________________________
consensus             TCTCCTCGGTCTTCCTAAGCGTAAAGTGTGCACACTTCCCACAAAGTTCGCATCGAGCTG
 
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rJMSF044M08-          TTAACTTGGTTACGGTATCAGCAATTGGAATTATATCTAGCACAGAGCCAAAGCTCCTTC
rJMFF032H09-          TTAACTTGGTTACGGTATCAGCAATTGGAATTATATCTAGCACAGAGCCAAAGCTCCTTC
rJMSF041D03-          TTAACTTGGTTACGGTATCAGCAATTGGAATTATATCTAGCACAGAGCCAAAGCTCCTTC
JMFF032H09+                                              TCTAGCACAGAGCCAAAGCTCCTTC
JMSF041D03+           TTAACTTGGTTACGGTATCAGCAATTGGAATTATATCTAGCACAGAGCCAAAGCTCCTTC
JMSF044M08+           TTAACTTGGTTACGGTATCAGCAATTGGAATTATATCTAGCACAGAGCCAAAGCTCCTTC
                      ____________________________________________________________
consensus             TTAACTTGGTTACGGTATCAGCAATTGGAATTATATCTAGCACAGAGCCAAAGCTCCTTC
 
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rJMSF044M08-          TCAAGTAGTCCCCATCCAACCCAGAAACAATTACAGTTTTGCCATCATGATCAGCGGCTT
rJMFF032H09-          TCAAGTAGTCCCCATCCAACCCAGAAACAATTACAGTTTTGCCATCATGATCAGCGGCTT
rJMSF041D03-          TCAAGTAGTCCCCATCCAACCCAGAAACAATTACAGTTTTGCCATCATGATCAGCGGCTT
JMFF032H09+           TCAAGTAGTCCCCATCCAACCCAGAAACAATTACAGTTTTGCCATCATGATCAGCGGCTT
JMSF041D03+           TCAAGTAGTCCCCATCCAACCCAGAAACAATTACAGTTTTGCCATCATGATCAGCGGCTT
JMSF044M08+           TCAAGTAGTCCCCATCCAACCCAGAAACAATTACAGTTTTGCCATCATGATCAGCGGCTT
                      ____________________________________________________________
consensus             TCAAGTAGTCCCCATCCAACCCAGAAACAATTACAGTTTTGCCATCATGATCAGCGGCTT
 
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rJMSF044M08-          CACAGCAGAACTCATATAGATCCGTAAAGAATTGAGCCTCATCAATGCC-ATCACCTCCA
rJMFF032H09-          CACAGCAGAACTCATATAGATCCGTAAAGAATTGAGCCTCATCAATGCCAATCACCTCCA
rJMSF041D03-          CACAGCAGAACTCATATAGATCCGTAAAGAATTGAGCCTCATCAATGCCAATCACCTCCA
JMFF032H09+           CACAGCAGAACTCATATAGATCCGTAAAGAATTGAGCCTCATCAATGCCAATCACCTCCA
JMSF041D03+           CACAGCAGAACTCATATAGATCCGTAAAGAATTGAGCCTCATCAATGCCAATCACCTCCA
JMSF044M08+           CACAGCAGAACTCATATAGATCCGTAAAGAATTGAGCCTCATCAATGCCAATCACCTCCA
                      ____________________________________________________________
consensus             CACAGCAGAACTCATATAGATCCGTAAAGAATTGAGCCTCATCAATGCCAATCACCTCCA
 
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rJMSF044M08-          ACTTATCATATGCTCCGGAACCA                                     
rJMFF032H09-          ACTTATCATATGCTCCGGAACCAATTTTTAGTTTGAATGATGAT                
rJMSF041D03-          ACTTATCATATGCTCCGGAACCNATTTTTAGTTTGAATGATGATAGA             
JMFF032H09+           ACTTATCATATGCTCCGGAACCAATTTTTAGTTTGAATGATGATAGATTTGCCAAAGGCC
JMSF041D03+           ACTTATCATATGCTCCGGAACCAATTTTTAGTTTGAATGATGATAGATTTGCCAAAGGCC
JMSF044M08+           ACTTATCATATGCTCCGGAACCAATTTTTAGTTTGAATGATGATAGATTTGCCAAAGGCC
                      ____________________________________________________________
consensus             ACTTATCATATGCTCCGGAACCAATTTTTAGTTTGAATGATGATAGATTTGCCAAAGGCC
 
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JMFF032H09+           AGCATGGCATTCTCTCTCCATCATGTGTCACAATAGAGTCCAATCCATATCTAGTATCCT
JMSF041D03+           AGCATGGCATTCTCTCTCCATCATGTGTCACAATAGAGTCCAATCCATATCTAGTATCCT
JMSF044M08+           AGCATGGCATTCTCTCTCCATCATGTGTCACAATAGAGTCCAATCCATATCTAGTATCCT
                      ____________________________________________________________
consensus             AGCATGGCATTCTCTCTCCATCATGTGTCACAATAGAGTCCAATCCATATCTAGTATCCT
 
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JMFF032H09+           TGTCTGACTTTATAATCGCAACATTTCTGCCATTGCCGCTCTCGGCCTTGATCCTTTCCA
JMSF041D03+           TGTCTGACTTTATAATCGCAACATTTCTGCCATTGCCGCTCTCGGCCTTGATCCTTTCCA
JMSF044M08+           TGTCTGACTTTATAATCGCAACATTTCTGCCATTGCCGCTCTCGGCCTTGATCCTTTCCA
                      ____________________________________________________________
consensus             TGTCTGACTTTATAATCGCAACATTTCTGCCATTGCCGCTCTCGGCCTTGATCCTTTCCA
 
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JMFF032H09+           GAAGAGTGGTGGTTTTCCCAGCAAACATAGGCCCCACAATCACATGAATCTCCCCGGGTT
JMSF041D03+           GAAGAGTGGTGGTTTTCCCAGCAAACATAGGCCCCACAATCACATGAATCTCCCCGGGTT
JMSF044M08+           GAAGAGTGGTGGTTTTCCCAGCAAACATAGGCCCCACAATCACATGAATCTCCCCGGGTT
                      ____________________________________________________________
consensus             GAAGAGTGGTGGTTTTCCCAGCAAACATAGGCCCCACAATCACATGAATCTCCCCGGGTT
 
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JMFF032H09+           CCGGCAGTGAGGCCTTGGTTCGCAAGCTCCGAACTTGATTACGTTCTGAAGCAGCTGAAA
JMSF041D03+           CCGGCAGTGAGGCCTTGGTTCGCAAGCTCCGAACTTGATTACGTTCTGAAGCAGCTGAAA
JMSF044M08+           CCGGCAGTGAGGCCTTGGTTCGCAAGCTCCGAACTTGATTACGTTCTGAAGCAGCTGAAA
                      ____________________________________________________________
consensus             CCGGCAGTGAGGCCTTGGTTCGCAAGCTCCGAACTTGATTACGTTCTGAAGCAGCTGAAA
 
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JMFF032H09+           CCCCAAATAGAGAAACTGCAATCTTGGTTCGAATGAAACTAGGGGTCTGAAAAGGGCTAG
JMSF041D03+           CCCCAAATAGAGAAACTGCAATCTTGGTTCGAATGAAACTAGGGGTCTGAAAAGGGCTAG
JMSF044M08+           CCCCAAATAGAGAAACTGCAATCTTGGTTCGAATGAAACTAGGGGTCTGAAAAGGGCTAG
                      ____________________________________________________________
consensus             CCCCAAATAGAGAAACTGCAATCTTGGTTCGAATGAAACTAGGGGTCTGAAAAGGGCTAG
 
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JMFF032H09+           TGAGGTTGAAGCTTCTTTGGGCAACAACGCTTCCCTGCAAATTGGTGCAGAAAGCTGCGG
JMSF041D03+           TGAGGTTGAAGCTTCTTTGGGCAACAACGCTTCCCTGCAAATTGGTGCAGAAAGCTGCGG
JMSF044M08+           TGAGGTTGAAGCTTCTTTGGGCAACAACGCTTCCCTGCAAATTGGTGCAGAAAGCTGCGG
                      ____________________________________________________________
consensus             TGAGGTTGAAGCTTCTTTGGGCAACAACGCTTCCCTGCAAATTGGTGCAGAAAGCTGCGG
 
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JMFF032H09+           GTTTAGCAAGTGTTGCGTTCAGAAGC                                  
JMSF041D03+           GTTTAGCAAGTGTTGCGTTCAGAAGCGATTTCATTCTCGAAACTCTTAACATCAAAGATA
JMSF044M08+           GTTTAGCAAGTGTTGCGTTCAGAAGCGATTTCATTCTCGAAACTCTTAACATCAAAGATA
                      ____________________________________________________________
consensus             GTTTAGCAAGTGTTGCGTTCAGAAGCGATTTCATTCTCGAAACTCTTAACATCAAAGATA
 
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JMSF041D03+           GAATAATAAAGTAGGGGTTCTTTGTGTTTCTTT                           
JMSF044M08+           GAATAATAAAGTAGGGGTTCTTTGTGTTTCTTTATCTATCACTTTTTTATGGGGTATTAA
                      ____________________________________________________________
consensus             GAATAATAAAGTAGGGGTTCTTTGTGTTTCTTTATCTATCACTTTTTTATGGGGTATTAA
 
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JMSF044M08+           ATATGCAAAGATGCGTGGAGACGGCGGCGGGGTCGCCGGTTGGAAGAGAAGAGCAGAGTC
                      ____________________________________________________________
consensus             ATATGCAAAGATGCGTGGAGACGGCGGCGGGGTCGCCGGTTGGAAGAGAAGAGCAGAGTC