| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS005C04 | Sequence | 554 | 010857 (3) | ref|XP_004242757.1| | 3e-53 | PREDICTED: CCR4-NOT transcription complex subunit 10 [Solanum lycopersicum] | |||||
| JMSF041N14 | Sequence | 788 | 010857 (3) | ref|XP_006358305.1| | 6e-26 | PREDICTED: CCR4-NOT transcription complex subunit 10-like [Solanum tuberosum] | 637 | 023607 | ref|XP_009613357.1| | 6e-61 | PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana tomentosiformis |
| JMSF049A17 | Sequence | 696 | 010857 (3) | ref|XP_004242757.1| | 4e-32 | PREDICTED: CCR4-NOT transcription complex subunit 10 [Solanum lycopersicum] | 715 | 022665 | ref|XP_009776714.1| | 2e-116 | PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 isoform X3 [Ni |
This contig is upended
. : . : . : . : . : . :
JMFS005C04+ TGAAATAATGCATCCAAAGTTGAGAATGCTTTTGCATA
____________________________________________________________
consensus TGAAATAATGCATCCAAAGTTGAGAATGCTTTTGCATA
. : . : . : . : . : . :
JMFS005C04+ TTCATGCAGATGGAACCAAGAAACTGCTAGGTTGTACACTGTCATTGAAGTATCAAATTC
____________________________________________________________
consensus TTCATGCAGATGGAACCAAGAAACTGCTAGGTTGTACACTGTCATTGAAGTATCAAATTC
. : . : . : . : . : . :
JMFS005C04+ ATCAATCAATACTGGGGAACTATGTAGGGTAGAATACTGGTTTGACATGATATTATTTCC
JMSF049A17+ GGGTAGAATACTGGTTTGACATGATATTATTTCC
____________________________________________________________
consensus ATCAATCAATACTGGGGAACTATGTAGGGTAGAATACTGGTTTGACATGATATTATTTCC
. : . : . : . : . : . :
JMFS005C04+ TTTAACGCCAGCTGCAGATTTTCTTCCAACATTACCAGTGGCCTCTGAATGATCTCCATC
JMSF049A17+ TTTAACGCCAGCTGCAGATTTTCTTCCAACATTACCAGTGGCCTCTGAATGATCTCCATC
JMSF041N14+ TCTCCATC
____________________________________________________________
consensus TTTAACGCCAGCTGCAGATTTTCTTCCAACATTACCAGTGGCCTCTGAATGATCTCCATC
. : . : . : . : . : . :
JMFS005C04+ AGCACCAGCATGATCGTTGCAGAACCTCTTAACCTCATTGAGTTCTTCTATAAGGCTCTT
JMSF049A17+ AGCACCAGCATGATCGTTGCAGAACCTCTTAACCTCATTGAGTTCTTCTATAAGGCTCTT
JMSF041N14+ AGCACCAGCATGATCGTTGCAGAACCTCTTAACCTCATTGAGTTCTTCTATAAGGCTCTT
____________________________________________________________
consensus AGCACCAGCATGATCGTTGCAGAACCTCTTAACCTCATTGAGTTCTTCTATAAGGCTCTT
. : . : . : . : . : . :
JMFS005C04+ AGGATCTGAATGCTCATCTTGAAAGCTCTTTGCAATTGCAATGTTATGAAGAACTTTTGG
JMSF049A17+ AGGATCTGAATGCTCATCTTGAAAGCTCTTTGCAATTGCAATGTTATGAAGAACTTTTGG
JMSF041N14+ AGGATCTGAATGCTCATCTTGAAAGCTCTTTGCAATTGCAATGTTATGAAGAACTTTTGG
____________________________________________________________
consensus AGGATCTGAATGCTCATCTTGAAAGCTCTTTGCAATTGCAATGTTATGAAGAACTTTTGG
. : . : . : . : . : . :
JMFS005C04+ ATCGCCTGCTTTTTTCTGCTGCAGCTGAAGCAAAACTCTAATACAGTCCAAGAATTTCCC
JMSF049A17+ ATCGCCTGCTTTTTTCTGCTGCAGCTGAAGCAAAACTCTAATACAGTCCAAGAATTTCCC
JMSF041N14+ ATCGCCTGCTTTTTTCTGCTGCAGCTGAAGCAAAACTCTAATACAGTCCAAGAATTTCCC
____________________________________________________________
consensus ATCGCCTGCTTTTTTCTGCTGCAGCTGAAGCAAAACTCTAATACAGTCCAAGAATTTCCC
. : . : . : . : . : . :
JMFS005C04+ CGATTGGAAAAGCAGAGCGGCCTCCTTAGCAAGTCCAGAAATGACGGAGAGGGCGCCCTC
JMSF049A17+ CGATTGGAAAAGCAGAGCGGCCTCCTTAGCAAGTCCAGAAATGACGGAGAGGGCGCCCTC
JMSF041N14+ CGATTGGAAAAGCAGAGCGGCCTCCTTAGCAAGTCCAGAAATGACGGAGAGGGCGCCCTC
____________________________________________________________
consensus CGATTGGAAAAGCAGAGCGGCCTCCTTAGCAAGTCCAGAAATGACGGAGAGGGCGCCCTC
. : . : . : . : . : . :
JMFS005C04+ ATCGTTCGCCACTGCAGCCGATGAAGAACCTTCTCGATTATTCGATGTGGCTATCGATGA
JMSF049A17+ ATCGTTCGCCACTGCAGCCGATGAAGAACCTTCTCGATTATTCGATGTGGCTATCGATGA
JMSF041N14+ ATCGTTCGCCACTGCAGCCGATGAAGAACCTTCTCGATTATTCGATGTGGCTATCGATGA
____________________________________________________________
consensus ATCGTTCGCCACTGCAGCCGATGAAGAACCTTCTCGATTATTCGATGTGGCTATCGATGA
. : . : . : . : . : . :
JMFS005C04+ TGAATAAGTTGGCGAATCCATTCAGCAACAGATCGA
JMSF049A17+ TGAATAAGTTGGCGAATCCATTCAGCAACAGATCGAATCAACAACCGCTTTGAAATACAC
JMSF041N14+ TGAATAAGTTGGCGAATCCATTCAGCAACAGATCGAATCAACAACCGCTTTGAAATACAC
____________________________________________________________
consensus TGAATAAGTTGGCGAATCCATTCAGCAACAGATCGAATCAACAACCGCTTTGAAATACAC
. : . : . : . : . : . :
JMSF049A17+ CGTAACGATCCCAAAAATCCTTAGCTTATCAGCTTAGAGCTTCACTAGCAGACTATGTTA
JMSF041N14+ CGTAACGATCCCAAAAATCCTTAGCTTATCAGCTTAGAGCTTCACTAGCAGACTATGTTA
____________________________________________________________
consensus CGTAACGATCCCAAAAATCCTTAGCTTATCAGCTTAGAGCTTCACTAGCAGACTATGTTA
. : . : . : . : . : . :
JMSF049A17+ ATCTTCTCTACATTCAAATCCGAATTCAGATAAGTAGACTGAAAGATGCTCAAAACCCTA
JMSF041N14+ ATCTTCTCTACATTCAAATCCGAATTCAGATAAGTAGACTGAAAGATGCTCAAAACCCTA
____________________________________________________________
consensus ATCTTCTCTACATTCAAATCCGAATTCAGATAAGTAGACTGAAAGATGCTCAAAACCCTA
. : . : . : . : . : . :
JMSF049A17+ CAGCTTCAACAATAAGAGTTTCATGTATATTTCAGGTTGTATACATGTATACATCTGTAT
JMSF041N14+ CAGCTTCAACAATAAGAGTTTCATGTATATTTCAGGTTGTATACATGTATACATCTGTAT
____________________________________________________________
consensus CAGCTTCAACAATAAGAGTTTCATGTATATTTCAGGTTGTATACATGTATACATCTGTAT
. : . : . : . : . : . :
JMSF049A17+ GTATCGATTAGCATACGTCGATTACTCGATTTCAGCATGAGAGAGAGGGGGGATCACTGC
JMSF041N14+ GTATCGATTAGCATACGTCGATTACTCGATTTCAGCATGAGAGAGAGGGGGGATCACTGC
____________________________________________________________
consensus GTATCGATTAGCATACGTCGATTACTCGATTTCAGCATGAGAGAGAGGGGGGATCACTGC
. : . : . : . : . : . :
JMSF049A17+ TC
JMSF041N14+ TCACTGGTATTGGGGGACTGATCATATCAGAATTACAGAAAAGAGAATGAATAGGGGGAA
____________________________________________________________
consensus TCACTGGTATTGGGGGACTGATCATATCAGAATTACAGAAAAGAGAATGAATAGGGGGAA
. : . : . : . : . : . :
JMSF041N14+ GGGGGGAAAAGAAATCAGGAAATTGGGAGTTTCTTTCGTTAAGTGGCTAATTTTTTATTA
____________________________________________________________
consensus GGGGGGAAAAGAAATCAGGAAATTGGGAGTTTCTTTCGTTAAGTGGCTAATTTTTTATTA
. : . : . : . : . : . :
JMSF041N14+ AAATAAAAATCAAATAAGTTATCGAACTACACACGAAATTGTAATTGGACCTTTGAACCC
____________________________________________________________
consensus AAATAAAAATCAAATAAGTTATCGAACTACACACGAAATTGTAATTGGACCTTTGAACCC