Contig 010855:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF041I20Sequence721010855 (2)ref|XP_009779434.1|237PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Nicotiana sylvestris] ref|XP_00665010855 (2)ref|XP_009626414.1|1e-25PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Nicotiana tomentosiformis] ref|XP_00

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF041I20- ACTCCATATTTACTTTAATGAAACCTTCCAC
                      ____________________________________________________________
consensus ACTCCATATTTACTTTAATGAAACCTTCCAC
 
. : . : . : . : . : . :
rJMSF041I20- TCTATATTCATACCAAGATTGCAATAAAGACTAGCATTATGCCTTAACAATGTAGCCCGC
                      ____________________________________________________________
consensus TCTATATTCATACCAAGATTGCAATAAAGACTAGCATTATGCCTTAACAATGTAGCCCGC
 
. : . : . : . : . : . :
rJMSF041I20- CCAGAAGGCAGAATGGCTTCTTCCATCCTGAGCTCATTCTTCCTGCTCTTGATCAAGCTC
                      ____________________________________________________________
consensus CCAGAAGGCAGAATGGCTTCTTCCATCCTGAGCTCATTCTTCCTGCTCTTGATCAAGCTC
 
. : . : . : . : . : . :
rJMSF041I20- CATCTATGCAACAAAAATGGCAGACTATTTCCCAATTCTTGACGATTGTCCCTAATGCAG
                      ____________________________________________________________
consensus CATCTATGCAACAAAAATGGCAGACTATTTCCCAATTCTTGACGATTGTCCCTAATGCAG
 
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rJMSF041I20- AAGCAATCTCCACCAGGGGGGCATTAGAGGTTATACCAACTCCTCAAGTCTCAGCCACCC
                      ____________________________________________________________
consensus AAGCAATCTCCACCAGGGGGGCATTAGAGGTTATACCAACTCCTCAAGTCTCAGCCACCC
 
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rJMSF041I20- CCAAAAAGAGAAGTTTTACGACTTGGTAAAACTCAATGCGGGTGTGTATTGCAGACTATT
                      ____________________________________________________________
consensus CCAAAAAGAGAAGTTTTACGACTTGGTAAAACTCAATGCGGGTGTGTATTGCAGACTATT
 
. : . : . : . : . : . :
rJMSF041I20- GATTTGGTGGCTTCCGTGCTTCTTTTTCAACTTGGTTTACATTGCTGACAACTACTTGAA
                      ____________________________________________________________
consensus GATTTGGTGGCTTCCGTGCTTCTTTTTCAACTTGGTTTACATTGCTGACAACTACTTGAA
 
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rJMSF041I20- CTTTTCCAGATACAACCTCAATCTGCTCCTCAATATATTTCAACAAAGTGTTTAGCTGGT
                      ____________________________________________________________
consensus CTTTTCCAGATACAACCTCAATCTGCTCCTCAATATATTTCAACAAAGTGTTTAGCTGGT
 
. : . : . : . : . : . :
rJMSF041I20- CTCTGTACAACTCACAGAGCCTATCCTGACGGTTCAACTCCATAGTCAGCTCATGTATCC
JMSF041I20+ CC
                      ____________________________________________________________
consensus CTCTGTACAACTCACAGAGCCTATCCTGACGGTTCAACTCCATAGTCAGCTCATGTATCC
 
. : . : . : . : . : . :
rJMSF041I20- TCCGGTCTTTATGGTCCATAGCATTCCGGGAAGGGCGACCAGAAACAATCAATGGATGAG
JMSF041I20+ TCCGGTCTTTATGGTCCATAGCATTCCGGGAAGGGCGACCAGAAACAATCAATGGATGAG
                      ____________________________________________________________
consensus TCCGGTCTTTATGGTCCATAGCATTCCGGGAAGGGCGACCAGAAACAATCAATGGATGAG
 
. : . : . : . : . : . :
rJMSF041I20- TATGCTCCTTCACGAATCTGGTAACAACCCATTTACCAGACTNATCAACCTTTNACCAGC
JMSF041I20+ TATGCTCCTTCACGAATCTGGTAACAACCCATTTACCAGACTTATCAACCTTT-ACCAGC
                      ____________________________________________________________
consensus TATGCTCCTTCACGAATCTGGTAACAACCCATTTACCAGACTTATCAACCTTTNACCAGC
 
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rJMSF041I20- ATCATTGCCTTGCATCCTNCTCGTGTGCTCGTTC
JMSF041I20+ ATCATTGCCTTGCATCCTTCTCGTGTGCTCGTTCTTGGCTTCCTAGCTGGCCCGAATTGG
                      ____________________________________________________________
consensus ATCATTGCCTTGCATCCTTCTCGTGTGCTCGTTCTTGGCTTCCTAGCTGGCCCGAATTGG
 
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JMSF041I20+ TCTTTCATTTTCACATAATAACCCTGCTTATTACACGAGAGCCGCCTAGAAAGAATCCTC
                      ____________________________________________________________
consensus TCTTTCATTTTCACATAATAACCCTGCTTATTACACGAGAGCCGCCTAGAAAGAATCCTC
 
. : . : . : . : . : . :
JMSF041I20+ TTGTCAACTTCTGACCTCCGACACTGATCAATGCGCATCACAAAGCCGGCACGCCTAGCA
                      ____________________________________________________________
consensus TTGTCAACTTCTGACCTCCGACACTGATCAATGCGCATCACAAAGCCGGCACGCCTAGCA
 
. : . : . : . : . : . :
JMSF041I20+ TAGTTGTCATAAAATTCCTTGGCAGCATCTTCAGACTCAAACTCCATTCCCACCACTGGT
                      ____________________________________________________________
consensus TAGTTGTCATAAAATTCCTTGGCAGCATCTTCAGACTCAAACTCCATTCCCACCACTGGT
 
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JMSF041I20+ TCTTGAACTCTACTTTCTTCACCCGAATCTAACCGCCTTTCAGCAGAAGCAGAACTGTCA
                      ____________________________________________________________
consensus TCTTGAACTCTACTTTCTTCACCCGAATCTAACCGCCTTTCAGCAGAAGCAGAACTGTCA
 
. : . : . : . : . : . :
JMSF041I20+ CCAATAGCAGCTTCAACCTCTATGTCCATGGTTTGGACAGAGGAGGTGCCGTCGTCTCGA
                      ____________________________________________________________
consensus CCAATAGCAGCTTCAACCTCTATGTCCATGGTTTGGACAGAGGAGGTGCCGTCGTCTCGA
 
. : . : . : . : . : . :
JMSF041I20+ TTGATTGCCAGATTTTTGAAAATTTTAGAGGTTTCTGCAGAATCTTCAATTCGATTTCTC
                      ____________________________________________________________
consensus TTGATTGCCAGATTTTTGAAAATTTTAGAGGTTTCTGCAGAATCTTCAATTCGATTTCTC
 
. : . : . : . : . : . :
JMSF041I20+ AGAGATAGTATTGTCGCGTCGATTTTCAACGCCGGAGGTTTTGAGCTTTTCACTTTATCT
                      ____________________________________________________________
consensus AGAGATAGTATTGTCGCGTCGATTTTCAACGCCGGAGGTTTTGAGCTTTTCACTTTATCT
 
. : . : . : . : . : . :
JMSF041I20+ TGCTGAGGAGAATTGAACGCCGGCGTTCATCGTCCGGGCACGAGTGTTACTTTCTTTCCG
                      ____________________________________________________________
consensus TGCTGAGGAGAATTGAACGCCGGCGTTCATCGTCCGGGCACGAGTGTTACTTTCTTTCCG
 
. : . : . : . : . : . :
JMSF041I20+ GTGACCACTGGAAAACCTAACTAAACTGTCACCACCAACGCCCACTGCTCATTGCTATTC
                      ____________________________________________________________
consensus GTGACCACTGGAAAACCTAACTAAACTGTCACCACCAACGCCCACTGCTCATTGCTATTC