Contig 010836:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032E08Sequence555010836 (3)emb|CDO99464.1|2e-39unnamed protein product [Coffea canephora]630004338 (3)ref|XP_009780205.1|7e-84PREDICTED: transcription factor VOZ1-like [Nicotiana sylvestris] ref|XP_00978020
JMSF014L17Sequence511010836 (3)emb|CDO99464.1|1e-45unnamed protein product [Coffea canephora]740004338 (3)ref|XP_009780205.1|4e-95PREDICTED: transcription factor VOZ1-like [Nicotiana sylvestris] ref|XP_00978020
JMSF039H07Sequence668010836 (3)emb|CDO99464.1|4e-46unnamed protein product [Coffea canephora]899004338 (3)ref|XP_009780205.1|2e-121PREDICTED: transcription factor VOZ1-like [Nicotiana sylvestris] ref|XP_00978020

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF014L17+ CTCTTGATAACCAGCAGCACCACTAACTTTTTGCGCATCAGG
                      ____________________________________________________________
consensus CTCTTGATAACCAGCAGCACCACTAACTTTTTGCGCATCAGG
 
. : . : . : . : . : . :
JMSF014L17+ TTCAGACTTTAGGGCAGCTAATGCACTGGTGGCGTCATCTTCCTCCTCACCAAGCTGCAC
                      ____________________________________________________________
consensus TTCAGACTTTAGGGCAGCTAATGCACTGGTGGCGTCATCTTCCTCCTCACCAAGCTGCAC
 
. : . : . : . : . : . :
JMSF014L17+ CAATCTACAAAGGTCTGATGTGTTAAATCCCAAACTCCCTCCCTGCAAAGAAGAAGCAGG
JMFF032E08+ CCTGCAAAGAAGAAGCAGG
JMSF039H07+ CCTGCAAAGAAGAAGCAGG
                      ____________________________________________________________
consensus CAATCTACAAAGGTCTGATGTGTTAAATCCCAAACTCCCTCCCTGCAAAGAAGAAGCAGG
 
. : . : . : . : . : . :
JMSF014L17+ GGAGGGCTCATTGAGNTCAGCCTTCCACTCCCGAAGCACCTGGTTAAGCTGCTCCTCAAG
JMFF032E08+ GGAGGGCTCATTGAGCTCAGCCTTCCACTCCCGAAGCACCTGGTTAAGCTGCTCCTCAAG
JMSF039H07+ GGAGGGCTCATTGAGCTCAGCCTTCCACTCCCGAAGCACCTGGTTAAGCTGCTCCTCAAG
                      ____________________________________________________________
consensus GGAGGGCTCATTGAGCTCAGCCTTCCACTCCCGAAGCACCTGGTTAAGCTGCTCCTCAAG
 
. : . : . : . : . : . :
JMSF014L17+ CACTGCCACTTCAGAAGTACGGCTCTCTTTCCTCAAGGACTGCAGATCAGTGAACATCCC
JMFF032E08+ CACTGCCACTTCAGAAGTACGGCTCTCTTTCCTCAAGGACTGCAGATCAGTGAACATCCC
JMSF039H07+ CACTGCCACTTCAGAAGTACGGCTCTCTTTCCTCAAGGACTGCAGATCAGTGAACATCCC
                      ____________________________________________________________
consensus CACTGCCACTTCAGAAGTACGGCTCTCTTTCCTCAAGGACTGCAGATCAGTGAACATCCC
 
. : . : . : . : . : . :
JMSF014L17+ TTGCAGATCATCCACCCGATTCTTAGCCCTGTCCTTGAAGACCTGGTAAGATGCAGACTT
JMFF032E08+ TTGCAGATCATCCACCCGATTCTTAGCCCTGTCCTTGAAGACCTGGTAAGATGCAGACTT
JMSF039H07+ TTGCAGATCATCCACCCGATTCTTAGCCCTGTCCTTGAAGACCTGGTAAGATGCAGACTT
                      ____________________________________________________________
consensus TTGCAGATCATCCACCCGATTCTTAGCCCTGTCCTTGAAGACCTGGTAAGATGCAGACTT
 
. : . : . : . : . : . :
JMSF014L17+ GCCCACGCCGCTCTTCGAACCCTTTCCCATCCTTAAACTTATAGCCTTTACCTTCAGTCT
JMFF032E08+ GCCCACGCCGCTCTTCGAACCCTTTCCCATCCTTAAACTTATAGCCTTTACCTTCAGTCT
JMSF039H07+ GCCCACGCCGCTCTTCGAACCCTTTCCCATCCTTAAACTTATAGCCTTTACCTTCAGTCT
                      ____________________________________________________________
consensus GCCCACGCCGCTCTTCGAACCCTTTCCCATCCTTAAACTTATAGCCTTTACCTTCAGTCT
 
. : . : . : . : . : . :
JMSF014L17+ TAACCTGGTAAGAACTGGTTGTGCTGAACAGCGAGAAAGGCAGAAGAGAGCGGCTTTGGG
JMFF032E08+ TAACCTGGTAAGAACTGGTTGTGCTGAACAGCGAGAAAGGCAGAAGGGAGCGGCTTTGGG
JMSF039H07+ TAACCTGGTAAGAACTGGTTGTGCTGAACAGCGAGAAAGGCAGAAGAGAGCGGCTTTGGG
                      ____________________________________________________________
consensus TAACCTGGTAAGAACTGGTTGTGCTGAACAGCGAGAAAGGCAGAAGAGAGCGGCTTTGGG
 
. : . : . : . : . : . :
JMSF014L17+ GGGAGTAGAGAGAGAAAGTTGAGGAGTGGAGAGTAGTTTTTTGTCGA
JMFF032E08+ GGGAGTAGAGAGAGAAAGTTGAGGAGTGGAGAGTAGTTTTTTGTCGA
JMSF039H07+ GGGAGTAGAGAGAGAAAGTTGAGGAGTGGAGAGTAGTTTTTTGTCGATGAGGTGCGATTG
                      ____________________________________________________________
consensus GGGAGTAGAGAGAGAAAGTTGAGGAGTGGAGAGTAGTTTTTTGTCGATGAGGTGCGATTG
 
. : . : . : . : . : . :
JMSF039H07+ CGTACGCGGCAAAAGCATGAAGAACCACCGCGCTGAGCCGCACGCCGCAGCCTGCTGACC
                      ____________________________________________________________
consensus CGTACGCGGCAAAAGCATGAAGAACCACCGCGCTGAGCCGCACGCCGCAGCCTGCTGACC