Contig 010835:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041M01Sequence639010835 (3)ref|XP_004234663.1|4e-76PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Solanum lycope535001183 (3)ref|XP_009783411.1|3e-30PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Nicotiana sylv
JMSF001N19Sequence297010835 (3)764001183 (3)ref|XP_009783411.1|6e-81PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Nicotiana sylv
JMSF039F20Sequence714010835 (3)ref|XP_004234663.1|6e-92PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Solanum lycope876001183 (3)ref|XP_009783411.1|4e-101PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Nicotiana sylv

Alignment

This contig is upended


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JMSF039F20+ ATTAGCCAGTTTTTCTACCAGAGACCTGACTAGAGAAAGATTATCCATAAGGAA
                      ____________________________________________________________
consensus ATTAGCCAGTTTTTCTACCAGAGACCTGACTAGAGAAAGATTATCCATAAGGAA
 
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JMFF041M01+ GCCTTGCAATACGCTGGGGGCACCCAAAGTTGATGTCCACATA
JMSF039F20+ AGCTCCATAGTTCCCCCGCCTTGCAATACGCTGGGGGCACCCAAAGTTGATGTCCACATA
                      ____________________________________________________________
consensus AGCTCCATAGTTCCCCCGCCTTGCAATACGCTGGGGGCACCCAAAGTTGATGTCCACATA
 
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JMFF041M01+ ATCACAATACGGTTCAACTCTTTGAGCAGCTTCCAGCAAAATTTCAGGGTCATTTGCACA
JMSF039F20+ ATCACAATACGGTTCAACTCTTTGAGCAGCTTCCAGCAAAATTTCAGGGTCATTTGCACA
                      ____________________________________________________________
consensus ATCACAATACGGTTCAACTCTTTGAGCAGCTTCCAGCAAAATTTCAGGGTCATTTGCACA
 
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JMFF041M01+ GAATTGAACAAACAGTGGTCGGTCCTCCTTGCAAGTAGTGAATTCTAGAGATCGATACTT
JMSF039F20+ GAATTGAACAAACAGTGGTCGGTCCTCCTTGCAAGTAGTGAATTCTAGAGATCGATACTT
                      ____________________________________________________________
consensus GAATTGAACAAACAGTGGTCGGTCCTCCTTGCAAGTAGTGAATTCTAGAGATCGATACTT
 
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JMFF041M01+ CTCATTCTCGGTGAAAATACGGGAATGGAGCATAGGCGTATATGCAGCTTGGGCGCCAAA
JMSF039F20+ GTCATTCTCGGTGAAAATACGGGAATGGAGCATAGGCGTATATGCAGCTTGGGCGCCAAA
                      ____________________________________________________________
consensus GTCATTCTCGGTGAAAATACGGGAATGGAGCATAGGCGTATATGCAGCTTGGGCGCCAAA
 
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JMFF041M01+ CTTACGACAAAGCATACGAAAAGGAAGCTCGGAGTTGTCGACCATGGGGGCGACTATGTA
JMSF039F20+ CTTACGACAAAGCATACGAAAAGGAAGCTCGGAGTTGTCGACCATGGGGGCGACTATGTA
                      ____________________________________________________________
consensus CTTACGACAAAGCATACGAAAAGGAAGCTCGGAGTTGTCGACCATGGGGGCGACTATGTA
 
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JMFF041M01+ TTTGGGCTGCCCCAGCATTTTCCAGTGAGCCCAAGCTCTCTCAATCCGCGCTTCCCCACT
JMSF039F20+ TTTGGGCTGCCCCAGCATTTTCCAGTGAGCCCAAGCTCTCTCAATCCGCGCTTCCCCACT
                      ____________________________________________________________
consensus TTTGGGCTGCCCCAGCATTTTCCAGTGAGCCCAAGCTCTCTCAATCCGCGCTTCCCCACT
 
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JMFF041M01+ CAAGTACCCATGCGGACGCCCCAAATCAGAAGACGGAAAGTTTTGTTCCTCCGAGTTGAG
JMSF001N19+ CAAGTACCCATGCGGACGCCCCAAATCAGAAGACGGAAAGTTTTGTTCCTCCGAGTTGAG
JMSF039F20+ CAAGTACCCATGCGGACGCCCCAAATCAGAAGACGGAAAGTTTTGTTCCTCCGAGTTGAG
                      ____________________________________________________________
consensus CAAGTACCCATGCGGACGCCCCAAATCAGAAGACGGAAAGTTTTGTTCCTCCGAGTTGAG
 
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JMFF041M01+ GGCCGTGGGTTCGGCGTTCTCTGCGCAGAGAAGGTCGTCTTCGATGCGGGGAAGGTCTGC
JMSF001N19+ GGCCGTGGGTTCGGCGTTCTCTGCGCAGAGAAGGTCGTCTTCGATGCGGGGAAGGTCTGC
JMSF039F20+ GGCCGTGGGTTCGGCGTTCTCTGCGCAGAGAAGGTCGTCTTCGATGCGGGGAAGGTCTGC
                      ____________________________________________________________
consensus GGCCGTGGGTTCGGCGTTCTCTGCGCAGAGAAGGTCGTCTTCGATGCGGGGAAGGTCTGC
 
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JMFF041M01+ AGAAGAGGCAGCTACAGCTTGGGCGGCCATGGAATGGGTTTGGCGGAAGGTTGAGCAGGA
JMSF001N19+ AGAAGAGGCAGCTACAGCTTGGGCGGCCATGGAATGGGTTTGGCGGAAGGTTGAGCAGGA
JMSF039F20+ AGAAGAGGCAGCTACAGCTTGGGCGGCCATGGAATGGGTTTGGCGGAAGGTTGAGCAGGA
                      ____________________________________________________________
consensus AGAAGAGGCAGCTACAGCTTGGGCGGCCATGGAATGGGTTTGGCGGAAGGTTGAGCAGGA
 
. : . : . : . : . : . :
JMFF041M01+ GGAGTTTGGTTTCCGGAAGAGAGAAAGAGCGGAGATGTGTTTGAATGTCATTAGGAGGCC
JMSF001N19+ GGAGTTTGGTTTCCGGAAGAGAGAAAGAGCGGAGATGTGTTTGAATGTCATTAGGAGGCC
JMSF039F20+ GGAGTTTGGTTTCCGGAAGAGAGAAAGAGCGGAGATGTGTTTGAATGTCATTAGGAGGCC
                      ____________________________________________________________
consensus GGAGTTTGGTTTCCGGAAGAGAGAAAGAGCGGAGATGTGTTTGAATGTCATTAGGAGGCC
 
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JMFF041M01+ ATGGGAAGAGCTGAGCAACCCATCGCCGCCTTTGTGCGGAGGAATGAACCGCGCAC
JMSF001N19+ ATGGGAAGAGCTGAGCAACCCATCGCCGCCTTTGTGCGGAGGAATGAACCGCGCAC
JMSF039F20+ ATGGGAAGAGCTGAGCAACCCATCGCCGCCTTTGTGCGGAGGAATGAACCGCGCACGGTC
                      ____________________________________________________________
consensus ATGGGAAGAGCTGAGCAACCCATCGCCGCCTTTGTGCGGAGGAATGAACCGCGCACGGTC