Contig 010832:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023O15Sequence595010832 (6)ref|XP_006351669.1|1e-63PREDICTED: rho-N domain-containing protein 1, chloroplastic-like [Solanum tuber771010832 (6)ref|XP_009614288.1|4e-53PREDICTED: rho-N domain-containing protein 1, chloroplastic [Nicotiana tomentos
JMSF039C04Sequence647010832 (6)ref|XP_006351669.1|1e-57PREDICTED: rho-N domain-containing protein 1, chloroplastic-like [Solanum tuber850010832 (6)ref|XP_009614288.1|7e-47PREDICTED: rho-N domain-containing protein 1, chloroplastic [Nicotiana tomentos
JMSF046F13Sequence778010832 (6)ref|XP_009614288.1|2e-74PREDICTED: rho-N domain-containing protein 1, chloroplastic [Nicotiana tomentos833010832 (6)ref|XP_009614288.1|6e-41PREDICTED: rho-N domain-containing protein 1, chloroplastic [Nicotiana tomentos

Alignment

This contig is upended


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rJMSF039C04- CAATTGGTGCATATTGAAAAGGGAATAAAACCAGGCAAGGGATTATGAAGCTAA
                      ____________________________________________________________
consensus CAATTGGTGCATATTGAAAAGGGAATAAAACCAGGCAAGGGATTATGAAGCTAA
 
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rJMSF039C04- TGGAAAGGTGAAGCTGAGAATTTAAGATAACCAAAGCTGTCTAACAGTATTGTTTAGTAA
rJMSF046F13- GTCTAACAGTATTGTTTAGTAA
                      ____________________________________________________________
consensus TGGAAAGGTGAAGCTGAGAATTTAAGATAACCAAAGCTGTCTAACAGTATTGTTTAGTAA
 
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rJMSF039C04- AAGGGGGAAAAAAATGGTAGCACAGAAGTTGCATTGCTGTAACAACAAAATGGAGCCATG
rJMSF046F13- AAGGGGGAAAAAAATGGTAGCACAGAAGTTGCATTGCTGTAACAACAAAATGGAGCCATG
rJMSF023O15- GTAGCACAGAAGTTGCATTGCTGTAACAACAAAATGGAGCCATG
                      ____________________________________________________________
consensus AAGGGGGAAAAAAATGGTAGCACAGAAGTTGCATTGCTGTAACAACAAAATGGAGCCATG
 
. : . : . : . : . : . :
rJMSF039C04- AAACAAAATCTTCAAGCTCAGTTGCCAAGATAGAGGCTTCATGTTTGGCTCAGCAACTCA
rJMSF046F13- AAACAAAATTTTCAAGCTCAGTTGCCAAGATAGAGGCTTCATGTTTGGCTCAGCAACTCA
rJMSF023O15- AAACAAAATTTTCAAGCTCAGTTGCCAAGATAGAGGCTTCATGTTTGGCTCAGCAACTCA
                      ____________________________________________________________
consensus AAACAAAATTTTCAAGCTCAGTTGCCAAGATAGAGGCTTCATGTTTGGCTCAGCAACTCA
 
. : . : . : . : . : . :
rJMSF039C04- ATGAGCTCTACTTTCTTCATTTTTGAGTATCCTTTCACACCGCGAGTCTTTGCAATCGCT
rJMSF046F13- ATGAGCTCTACTTTCTTCATTTTTGAGTATCCTTTCACACCGCGAGTCTTTGCAATCGCT
rJMSF023O15- ATGAGCTCTACTTTCTTCATTTTTGAGTATCCTTTCACACCGCGAGTCTTTGCAATCGCT
                      ____________________________________________________________
consensus ATGAGCTCTACTTTCTTCATTTTTGAGTATCCTTTCACACCGCGAGTCTTTGCAATCGCT
 
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rJMSF039C04- CTCAGTTCGGGTACTGTCATTTCATCAAACTTGTTGGCGCCAACTTGGTTATGTTCTTCA
rJMSF046F13- CTCAGTTCGGGTACTGTCATTTCATCAAACTTGTTGGCGCCAACTTGGTTATGTTCTTCA
rJMSF023O15- CTCAGTTCGGGTACTGTCATTTCATCAAACTTGTTGGCGCCAACTTGGTTATGTTCTTCA
                      ____________________________________________________________
consensus CTCAGTTCGGGTACTGTCATTTCATCAAACTTGTTGGCGCCAACTTGGTTATGTTCTTCA
 
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rJMSF039C04- TCATTATCATCTTCATCATGAATGTCAGTACTCTCGTCGTCTGACAGCTCATCAAACACA
rJMSF046F13- TCATTATCATCTTCATCATGAATGTCAGTACTCTCGTCGTCTGACAGCTCATCAAACACA
rJMSF023O15- TCATTATCATCTTCATCATGAATGTCAGTACTCTCGTCGTCTGACAGCTCATCAAACACA
                      ____________________________________________________________
consensus TCATTATCATCTTCATCATGAATGTCAGTACTCTCGTCGTCTGACAGCTCATCAAACACA
 
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rJMSF039C04- TCCACATCTGAGAAAATCGGTTCTGTGAGAGACGCAAGCTCATCAACCTTACTTCCGGTG
rJMSF046F13- TCCACATCTGAGAAAATCGGTTCTGTGAGAGACGCAAGCTCATCAACCTTACTTCCGGTG
rJMSF023O15- TACACATCTGAGAAAATCGGTTCTGTGAGAGACGCAAGCTCATCAACCTTACTTCCGGTG
                      ____________________________________________________________
consensus TCCACATCTGAGAAAATCGGTTCTGTGAGAGACGCAAGCTCATCAACCTTACTTCCGGTG
 
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rJMSF039C04- CTATTGAGAGATTTGAGTTTTGAATTTATCCCAAGACGTTCTCCATCAGTTTCAGCAGGT
rJMSF046F13- CTATTGAGAGATTTGAGTTTTGAATTTATCCCAAGACGTTCTCCATCAGTTTCAGCAGGT
rJMSF023O15- CTATTGAGAGATTTGAGTTTTGAATTTATCCCAAGACGTTCTCCATCAGTTTCAGCAGGT
                      ____________________________________________________________
consensus CTATTGAGAGATTTGAGTTTTGAATTTATCCCAAGACGTTCTCCATCAGTTTCAGCAGGT
 
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rJMSF039C04- GCAACAGGGTTAACAGTATCTTCCTCGGAATAACTAGGCTGAAACTTGACCCTAGAAACT
rJMSF046F13- GCAACAGGGTTAACAGTATCTTCCTCGGAATAACTAGGCTGAAACTTGACCCTAGAAACT
rJMSF023O15- GCAACAGGGTTAACAGTATCTTCCTCGGAATAACTAGGCTGAAACTTGACCCTAGAAACT
                      ____________________________________________________________
consensus GCAACAGGGTTAACAGTATCTTCCTCGGAATAACTAGGCTGAAACTTGACCCTAGAAACT
 
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rJMSF039C04- GGTGATCTCCGTCGGAAATTTGACATTGGTCGGTTACCCACAGGGGCTTCACTTTCTCGC
rJMSF046F13- GGTGATCTCCGTCGGAAATTTGACATTGGTCGGTTACCCACAGGGGCTTCACTTTCTCGC
rJMSF023O15- GGTGATCTCCGTCGGAAATTTGACATTGGTCGGTTACCCACAGGGGCTTCACTTTCTCGC
JMSF046F13+ CGGAAATTTGACATTGGTCGGTTACCCACAGGGGCTTCACTTTCTCGC
                      ____________________________________________________________
consensus GGTGATCTCCGTCGGAAATTTGACATTGGTCGGTTACCCACAGGGGCTTCACTTTCTCGC
 
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rJMSF039C04- TGTTGACGCTTCAAAATGCTTTTCGATTCAAAGCTGTCCGTGCTTCTCTCATCAGTGGGA
rJMSF046F13- TGTTGACGCTTCAAAATGCTTTTCGATTCAAAGCTGTCCGTGCTTCTCTCATCAGTGGGA
rJMSF023O15- TGTTGACGCTTCAAAATGCTTTTCGATTCAAAGCTGTCCGTGCTTCTCTCATCAGTGGGA
JMSF046F13+ TGTTGACGCTTCAAAATGCTTTTCGATTCAAAGCTGTCCGTGCTTCTCTCATCAGTGGGA
                      ____________________________________________________________
consensus TGTTGACGCTTCAAAATGCTTTTCGATTCAAAGCTGTCCGTGCTTCTCTCATCAGTGGGA
 
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rJMSF039C04- CTAGACTGGTCCAGAATGAAGTCAGTACTACTGTCAGTTTTCTTCTCTTTCTGAACTGCA
rJMSF046F13- CTAGACTGGTCCAGAATGAAGTCAGTACTACTGTCAGTTTTCTTCTCTTTCTGAACTGCA
rJMSF023O15- CTAGACTGGTCCAGAATGAAGTCAGTACTACTGTCAGTTTTCTTCTCTTTCTGAACTGCA
JMSF023O15+ TCTGAACTGCA
JMSF046F13+ CTAGACTGGTCCAGAATGAAGTCAGTACTACTGTCAGTTTTCTTCTCTTTCTGAACTGCA
                      ____________________________________________________________
consensus CTAGACTGGTCCAGAATGAAGTCAGTACTACTGTCAGTTTTCTTCTCTTTCTGAACTGCA
 
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rJMSF039C04- TGTTTCCTTAAAAGCTTC-AAAAGTGAATCTACAGTTTCACTCTCTTTACCTTTACCCTT
rJMSF046F13- TGTTTCCTTAAAAGCTTCAAAAAGTGAATCTACAGTTTCACTCTCTTTACCTTTACCCTT
rJMSF023O15- TGTTTCCTTAAAAGCTTC-AAAAGTGAATCTACAGTTTCACTCTCTTTACCTTTACCCTT
JMSF023O15+ TGTTTCCTTAAAAGCTTC-AAAAGTGAATCTACAGTTTCACTCTCTTTACCTTTACCCTT
JMSF046F13+ TGTTTCCTTAAAAGCTTC-AAAAGTGAATCTACAGTTTCACTCTCTTTACCTTTACCCTT
JMSF039C04+ AGCTTC-AAAAGTGAATCTACAGTTTCACTCTCTTTACCTTTACCCTT
                      ____________________________________________________________
consensus TGTTTCCTTAAAAGCTTC-AAAAGTGAATCTACAGTTTCACTCTCTTTACCTTTACCCTT
 
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rJMSF039C04- AGCCTTTGGCTCTGGAA
rJMSF046F13- AGCCTTTGGCTCTGGAACTTTGTTACCTTCTTTCACAGCCGCTCTTTCACGGAGTTGAGC
rJMSF023O15- AGCCTTTGGCTCTGGAACTTTGTTACCTTCTTTCACAGCCGCTCTTTCACGGAGTTGAGC
JMSF023O15+ AGCCTTTGGCTCTGGAACTTTGTTACCTTCTTTCACAGCCGCTCTTTCACGGAGTTGAGC
JMSF046F13+ AGCCTTTGGCTCTGGAACTTTGTTACCTTCTTTCACAGCCGCTCTTTCACGGAGTTGAGC
JMSF039C04+ AGCCTTTGGCTCTGGAACTTTGTTACCTTCTTTCACAGCCGCTCTTTCACGGAGTTGAGC
                      ____________________________________________________________
consensus AGCCTTTGGCTCTGGAACTTTGTTACCTTCTTTCACAGCCGCTCTTTCACGGAGTTGAGC
 
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rJMSF046F13- CTGCACC
rJMSF023O15- CTGCACCT
JMSF023O15+ CTGCACCTTCCTGAATAGTTCAACAATCTTCTTCTCCCTCGGACCAGGAGTTGCAGTCCC
JMSF046F13+ CTGCACCTTCCTGAATAGTTCAACAATCTTCTTCTCCCTCGGACCAGGAGTTGCAGTCCC
JMSF039C04+ CTGCACCTTCCTGAATAGTTCAACAATCTTCTTCTCCCTCGGACCAGGAGTTGCAGTCCC
                      ____________________________________________________________
consensus CTGCACCTTCCTGAATAGTTCAACAATCTTCTTCTCCCTCGGACCAGGAGTTGCAGTCCC
 
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JMSF023O15+ TTGGACTTTTGATGTATTCGATGCAGTAAGCAGTGGCCCATTTTCGGACGAGAACATTTC
JMSF046F13+ TTGGACTTTTGATGTATTCGATGCAGTAAGCAGTGGCCCATTTTCGGACGAGAACATTTC
JMSF039C04+ TTGGACTTTTGATGTATTCGATGCAGTAAGCAGTGGCCCATTTTCGGACGAGAACATTTC
                      ____________________________________________________________
consensus TTGGACTTTTGATGTATTCGATGCAGTAAGCAGTGGCCCATTTTCGGACGAGAACATTTC
 
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JMSF023O15+ AGACTCTTCTAGGTTATCATAGCCATCTCTATCTTCATTTTGCCTTCGGAAGCCCCCATG
JMSF046F13+ AGACTCTTCTAGGTTATCATAGCCATCTCTATCTTCATTTTGCCTTCGGAAGCCCCCATG
JMSF039C04+ AGACTCTTCTAGGTTATCATAGCCATCTCTATCTTCATTTTGCCTTCGGAAGCCCCCATG
                      ____________________________________________________________
consensus AGACTCTTCTAGGTTATCATAGCCATCTCTATCTTCATTTTGCCTTCGGAAGCCCCCATG
 
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JMSF023O15+ CTTGTTATACTTTGAAAAATCAGGATTATTCCTCGGATTGCTAGAACTAGCACTACAAAC
JMSF046F13+ CTTGTTATACTTTGAAAAATCAGGATTATTCCTCGGATTGCTAGAACTAGCACTACAAAC
JMSF039C04+ CTTGTTATACTTTGAAAAATCAGGATTATTCCTCGGATTGCTAGAACTAGCACTACAAAC
                      ____________________________________________________________
consensus CTTGTTATACTTTGAAAAATCAGGATTATTCCTCGGATTGCTAGAACTAGCACTACAAAC
 
. : . : . : . : . : . :
JMSF023O15+ AAAAGATGAACTCCTGGTAGTAGATTCCAGATGTAAAATATTGGTCTTGGGAAATTTCTT
JMSF046F13+ AAAAGATGAACTCCTGGTAGTAGATTCCAGATGTAAAATATTGGTCTTGGGAAATTTCTT
JMSF039C04+ AAAAGATGAACTCCTGGTAGTAGATTCCAGATGTAAAATATTGGTCTTGGGAAATTTCTT
                      ____________________________________________________________
consensus AAAAGATGAACTCCTGGTAGTAGATTCCAGATGTAAAATATTGGTCTTGGGAAATTTCTT
 
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JMSF023O15+ CCATTTACCAGGAGAAGAACATGGTGATATGTTCACCACTCCTCCAGATAACCCAGAGCA
JMSF046F13+ CCATTTACCAGGAGAAGAACATGGTGATATGTTCACCACTCCTCCAGATAACCCAGAGCA
JMSF039C04+ CCATTTACCAGGAGAAGAACATGGTGATATGTTCACCACTCCTCCAGATAACCCAGAGCA
                      ____________________________________________________________
consensus CCATTTACCAGGAGAAGAACATGGTGATATGTTCACCACTCCTCCAGATAACCCAGAGCA
 
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JMSF023O15+ TGGGAGACATTTACCATCTGGTAACCCATATCCTGAAAAGCTTTTTGCAGGGAAATAAAT
JMSF046F13+ TGGGAGACATTTACCATCTGGTAACCCATATCCTGAAAAGCTTTTTGCAGGGAAATAAAT
JMSF039C04+ TGGGAGACATTTACCATCTGGTAACCCATATCCTGAAAAGCTTTTTGCAGGGAAATAAAT
                      ____________________________________________________________
consensus TGGGAGACATTTACCATCTGGTAACCCATATCCTGAAAAGCTTTTTGCAGGGAAATAAAT
 
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JMSF023O15+ CCTGCACGACATTATTTTGGAACAGAGCTTGGAAGCGCTCTAAT
JMSF046F13+ CCTGCACGACATTATTTTGGAACAGAGCTTGGAAGCGCTCTAATGGCGGTTTCGCTCCCG
JMSF039C04+ CCTGCACGACATTATTTTGGAACAGAGCTTGGAAGCGCTCTAATGGCGGTTTCGCTCCCG
                      ____________________________________________________________
consensus CCTGCACGACATTATTTTGGAACAGAGCTTGGAAGCGCTCTAATGGCGGTTTCGCTCCCG
 
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JMSF046F13+ CGTTTGGTCG
JMSF039C04+ CGTTTGGTCGATACTTGATAAGGAACGTGGGTGGGGATAATCGACTGTTCCGGACTTCGT
                      ____________________________________________________________
consensus CGTTTGGTCGATACTTGATAAGGAACGTGGGTGGGGATAATCGACTGTTCCGGACTTCGT